Rh4DG006200

ribosomal protein import into nucleus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0004228
Physical Location & Seq
Reverse (-)
1108722 .. 1109462
741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG006200.1

Sequence Viewer

Length: 741 bp
ATGATGGAGTCGGGGTTTCCTCAGGAATTGCAAACAAAAGCCTACGGAATTCTGAGCTCCAACGATGTTGGGCCATTGGAGACACTCTTTTCTCACGTGTTTGGCTCCCAAGAACCCCAAAGGTCTCAAGCTTATACCTTTTTACATTGTTGCAAAAAGCACTTCCCACATTTGCTCTTCATAAAGCTCTTTTTTGTTATTAGATGTAGCCCTGTCTCTGACAATATGTCCAGGTCTGCGCTTGTGCTTAGACAGCTTCGTTATCTCAAAATATGTGACCTTTGGCCCAAGTTGTCTCTAATTGCTCAAAATTACATGAAATCCCACTTCCTTGTTTGTCTTCAAGAGGAAGTTTCAATGCCCACTTTGGGACTACTTTGTGGCATTGTGTCTGAAATGGGCTCTGAGATTTCCAAGGCTGGCAATGAGTGGCCAGAGCAGGCAGAGCTCATGGAGTTTTTGTTGAATTCTATTCAATTGGATTATGAAAAGTTACAACAATGTGCATTGTGGGTGTTGGCTTATTTGCCAAAAGGGTTCCGTCCGGTTGTTTGTGAAGCTTTAGTTCCTAGCCTTGAACCTTTACACTCGGCAATATTACAAGCCTTGAGTTCCCCCAATGCTGATATTCAAGTTACTGCATTTGGTGCTGTGGTTAGTTTGATAGGTTTGTTTACGAGTTCAAAGGGGCGGAACTGGTTTAATGACCTTTTGAGAGCAATTGATGGTGGGACTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

246

Amino Acids

27.53

Weight (kDa)

6.07

Isoelectric Point (pI)

50.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_IPO5 PF25780 126 - 240 2.2e-06 IPO5-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 691
AcoI YGGCCR 1 cut(s) 431
AcsI RAATTY 2 cut(s) 48, 466
AcvI CACGTG 1 cut(s) 97
AfiI CCNNNNNNNGG 1 cut(s) 368
AflIII ACRYGT 1 cut(s) 96
AgsI TTSAA 7 cut(s) 344, 357, 466, 476, 578, 632, 684
AhdI GACNNNNNGTC 1 cut(s) 226
AjnI CCWGG 1 cut(s) 230
AluBI AGCT 6 cut(s) 57, 131, 187, 256, 448, 560
AluI AGCT 6 cut(s) 57, 131, 187, 256, 448, 560
Alw21I GWGCWC 2 cut(s) 59, 450
Alw26I GTCTC 4 cut(s) 74, 129, 220, 300
AoxI GGCC 3 cut(s) 71, 284, 431
ApoI RAATTY 2 cut(s) 48, 466
AspLEI GCGC 1 cut(s) 241
AspS9I GGNCC 2 cut(s) 71, 285
AxyI CCTNAGG 1 cut(s) 21
BalI TGGCCA 1 cut(s) 433
BanII GRGCYC 3 cut(s) 59, 404, 450
BbrPI CACGTG 1 cut(s) 97
BbsI GAAGAC 1 cut(s) 332
Bbv12I GWGCWC 2 cut(s) 59, 450
BccI CCATC 1 cut(s) 719
BciT130I CCWGG 1 cut(s) 232
BcoDI GTCTC 4 cut(s) 74, 129, 220, 300
BfaI CTAG 1 cut(s) 570
Bme1390I CCNGG 1 cut(s) 232
BmeRI GACNNNNNGTC 1 cut(s) 226
BmgT120I GGNCC 2 cut(s) 71, 285
BmiI GGNNCC 2 cut(s) 106, 539
BmrFI CCNGG 1 cut(s) 232
BpiI GAAGAC 1 cut(s) 332
BpuEI CTTGAG 2 cut(s) 111, 628
BsaAI YACGTR 1 cut(s) 97
BsaI GGTCTC 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 414
BsaWI WCCGGW 1 cut(s) 544
BsaXI ACNNNNNCTCC 3 cut(s) 29, 446, 476
Bsc4I CCNNNNNNNGG 1 cut(s) 368
Bse1I ACTGG 1 cut(s) 701
Bse21I CCTNAGG 1 cut(s) 21
Bse3DI GCAATG 1 cut(s) 430
BseBI CCWGG 1 cut(s) 232
BseDI CCNNGG 1 cut(s) 414
BseLI CCNNNNNNNGG 1 cut(s) 368
BseMI GCAATG 1 cut(s) 430
BseMII CTCAG 3 cut(s) 35, 44, 396
BseNI ACTGG 1 cut(s) 701
BshFI GGCC 3 cut(s) 73, 286, 433
BsiHKAI GWGCWC 2 cut(s) 59, 450
BsiSI CCGG 1 cut(s) 545
BslFI GGGAC 1 cut(s) 384
BslI CCNNNNNNNGG 1 cut(s) 368
BsmAI GTCTC 4 cut(s) 74, 129, 220, 300
BsmFI GGGAC 1 cut(s) 384
BsnI GGCC 3 cut(s) 73, 286, 433
Bso31I GGTCTC 1 cut(s) 129
Bsp1286I GDGCHC 3 cut(s) 59, 404, 450
BspACI CCGC 1 cut(s) 691
BspANI GGCC 3 cut(s) 73, 286, 433
BspCNI CTCAG 3 cut(s) 34, 45, 397
BspLI GGNNCC 2 cut(s) 106, 539
BspQI GCTCTTC 1 cut(s) 182
BspTNI GGTCTC 1 cut(s) 129
BsrDI GCAATG 1 cut(s) 430
BsrI ACTGG 1 cut(s) 701
BssECI CCNNGG 1 cut(s) 414
BssT1I CCWWGG 1 cut(s) 414
Bst2UI CCWGG 1 cut(s) 232
Bst4CI ACNGT 1 cut(s) 736
Bst6I CTCTTC 1 cut(s) 182
BstAPI GCANNNNNTGC 1 cut(s) 647
BstBAI YACGTR 1 cut(s) 97
BstC8I GCNNGC 2 cut(s) 421, 441
BstDEI CTNAG 4 cut(s) 21, 53, 248, 405
BstHHI GCGC 1 cut(s) 241
BstMAI GTCTC 4 cut(s) 74, 129, 220, 300
BstMWI GCNNNNNNNGC 3 cut(s) 253, 445, 647
BstNI CCWGG 1 cut(s) 232
BstSCI CCNGG 1 cut(s) 230
BstV2I GAAGAC 1 cut(s) 332
Bsu36I CCTNAGG 1 cut(s) 21
BsuRI GGCC 3 cut(s) 73, 286, 433
Cac8I GCNNGC 2 cut(s) 421, 441
CfoI GCGC 1 cut(s) 241
Cfr13I GGNCC 2 cut(s) 71, 285
CviAII CATG 2 cut(s) 316, 451
DdeI CTNAG 4 cut(s) 21, 53, 248, 405
DriI GACNNNNNGTC 1 cut(s) 226
EaeI YGGCCR 1 cut(s) 431
Eam1104I CTCTTC 1 cut(s) 182
Eam1105I GACNNNNNGTC 1 cut(s) 226
EarI CTCTTC 1 cut(s) 182
EciI GGCGGA 1 cut(s) 706
Ecl136II GAGCTC 2 cut(s) 57, 448
Eco130I CCWWGG 1 cut(s) 414
Eco24I GRGCYC 3 cut(s) 59, 404, 450
Eco31I GGTCTC 1 cut(s) 129
Eco53kI GAGCTC 2 cut(s) 57, 448
Eco72I CACGTG 1 cut(s) 97
Eco81I CCTNAGG 1 cut(s) 21
EcoICRI GAGCTC 2 cut(s) 57, 448
EcoRI GAATTC 2 cut(s) 48, 466
EcoRII CCWGG 1 cut(s) 230
EcoT14I CCWWGG 1 cut(s) 414
EcoT38I GRGCYC 3 cut(s) 59, 404, 450
ErhI CCWWGG 1 cut(s) 414
FaeI CATG 2 cut(s) 319, 454
FaiI YATR 7 cut(s) 135, 182, 227, 274, 317, 452, 486
FaqI GGGAC 1 cut(s) 384
FatI CATG 2 cut(s) 315, 450
FriOI GRGCYC 3 cut(s) 59, 404, 450
FspBI CTAG 1 cut(s) 570
GlaI GCGC 1 cut(s) 240
HaeIII GGCC 3 cut(s) 73, 286, 433
HapII CCGG 1 cut(s) 545
HhaI GCGC 1 cut(s) 241
Hin1II CATG 2 cut(s) 319, 454
Hin6I GCGC 1 cut(s) 239
HinP1I GCGC 1 cut(s) 239
HindIII AAGCTT 2 cut(s) 129, 558
HinfI GANTC 1 cut(s) 8
HpaII CCGG 1 cut(s) 545
Hpy166II GTNNAC 1 cut(s) 675
Hpy188I TCNGA 4 cut(s) 54, 220, 394, 406
Hpy188III TCNNGA 2 cut(s) 23, 344
Hpy8I GTNNAC 1 cut(s) 675
HpyCH4III ACNGT 1 cut(s) 736
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 4 cut(s) 31, 153, 506, 641
HpyF10VI GCNNNNNNNGC 3 cut(s) 253, 445, 647
HpyF3I CTNAG 4 cut(s) 21, 53, 248, 405
HpySE526I ACGT 1 cut(s) 96
Hsp92II CATG 2 cut(s) 319, 454
HspAI GCGC 1 cut(s) 239
LguI GCTCTTC 1 cut(s) 182
LmnI GCTCC 2 cut(s) 62, 110
LpnPI CCDG 9 cut(s) 8, 217, 225, 244, 405, 425, 447, 558, 682
MaeI CTAG 1 cut(s) 570
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 3 cut(s) 275, 492, 634
MboII GAAGA 2 cut(s) 169, 332
MfeI CAATTG 2 cut(s) 476, 720
MhlI GDGCHC 3 cut(s) 59, 404, 450
MlsI TGGCCA 1 cut(s) 433
MluCI AATT 7 cut(s) 26, 48, 300, 310, 466, 476, 720
MluNI TGGCCA 1 cut(s) 433
MlyI GAGTC 1 cut(s) 17
MmeI TCCRAC 1 cut(s) 84
MnlI CCTC 2 cut(s) 30, 340
Mox20I TGGCCA 1 cut(s) 433
MscI TGGCCA 1 cut(s) 433
MseI TTAA 2 cut(s) 702, 739
Msp20I TGGCCA 1 cut(s) 433
MspI CCGG 1 cut(s) 545
MspR9I CCNGG 1 cut(s) 232
MunI CAATTG 2 cut(s) 476, 720
MvaI CCWGG 1 cut(s) 232
MwoI GCNNNNNNNGC 3 cut(s) 253, 445, 647
NlaIII CATG 2 cut(s) 319, 454
NlaIV GGNNCC 2 cut(s) 106, 539
NmeAIII GCCGAG 1 cut(s) 569
NmuCI GTSAC 1 cut(s) 275
PciSI GCTCTTC 1 cut(s) 182
PleI GAGTC 1 cut(s) 16
PmaCI CACGTG 1 cut(s) 97
PmlI CACGTG 1 cut(s) 97
PpsI GAGTC 1 cut(s) 16
Ppu21I YACGTR 1 cut(s) 97
Psp124BI GAGCTC 2 cut(s) 59, 450
Psp6I CCWGG 1 cut(s) 230
PspCI CACGTG 1 cut(s) 97
PspGI CCWGG 1 cut(s) 230
PspN4I GGNNCC 2 cut(s) 106, 539
PspPI GGNCC 2 cut(s) 71, 285
SacI GAGCTC 2 cut(s) 59, 450
SapI GCTCTTC 1 cut(s) 182
SaqAI TTAA 2 cut(s) 702, 739
Sau96I GGNCC 2 cut(s) 71, 285
SchI GAGTC 1 cut(s) 17
ScrFI CCNGG 1 cut(s) 232
SduI GDGCHC 3 cut(s) 59, 404, 450
SmlI CTYRAG 2 cut(s) 126, 607
SmoI CTYRAG 2 cut(s) 126, 607
Sse9I AATT 7 cut(s) 26, 48, 300, 310, 466, 476, 720
SsiI CCGC 1 cut(s) 691
SspI AATATT 1 cut(s) 597
SspMI CTAG 1 cut(s) 570
SstI GAGCTC 2 cut(s) 59, 450
StyD4I CCNGG 1 cut(s) 230
StyI CCWWGG 1 cut(s) 414
TaaI ACNGT 1 cut(s) 736
TaiI ACGT 1 cut(s) 99
TasI AATT 7 cut(s) 26, 48, 300, 310, 466, 476, 720
Tru1I TTAA 2 cut(s) 702, 739
Tru9I TTAA 2 cut(s) 702, 739
TseFI GTSAC 1 cut(s) 275
Tsp45I GTSAC 1 cut(s) 275
TspDTI ATGAA 3 cut(s) 169, 332, 501
TspGWI ACGGA 2 cut(s) 60, 530
XapI RAATTY 2 cut(s) 48, 466
XspI CTAG 1 cut(s) 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.