RLG00000010227

ribosomal protein import into nucleus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0004228
Physical Location & Seq
Forward (+)
64429060 .. 64430763
1704 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010227

Sequence Viewer

Length: 1320 bp
ATGATGGAGTCGGAGTTTCCTCCGGAATTGCAAACACAAGCCTACGGAATTCTGAGCTCCAACGATGTTGAGCCATTGGAAACACTCTTTTCTCACGTGTTTGGCTCCCAAGAACCCCAAAGGTCCCAAGCTTGCACCTTTTTACATTGTTGCAAAAAGCACTTCCCACATTTGCTCTTCATAAAACTCTTTTTTGTTATTAGATGTAGCCCTGTCTCTGACACTAGGTCCAGGTCTGCGCTTGTGCTTCGTTATCTCAAAATCTGTGACCTTTGGCCTAACTTGTCTCTAATTGCTCAAAATTACATGAAATCCCACTTCCTTGTTTGTCTTCAAGAGGAAGTTTCAATGCCCACTTTGAGACTACTTTGTGGCATTGTCTCTGAAATGGGCTCTGAGATTTCCAAGGCTGGCAATGAGTGGCCAGAGCTGATGGAGTTTCTGTTGAACTCTATTCAATCGGATTATGAAAAGTTGCAACAATGTGCATTATGGGTGTTGGCTTATTTGCCAAAAGGGTTCCGTCCGGTTGTTTGTGAAGCTTTGGTTCCTAGCCTTGAACCTTTACACTCGGCAATATTACAAGCCTTGAGTTCCTCCAATGCTGATATTCAGGTTACTGCATTTGGTGCTGTGGTTAGTTTGATAGGTTTGTTTACGAGTTCACAGGGGCGGAACTGGTTTAATGACCTTTTGAGAGCAATGATGGTGGGACTGTTTAACTTGTTGAGTCACTTGAAAGAAGAATATGCTCGTGGGGCTGTCAATGAGTTAATAATGCTGGTCATGGATGAGCCTCAGATGTTGAAGCCATACCTTAACCATCTAGTACTCGACATGCTTAATGTGCTAGAGTGTAAAAAAGTGACAGATAAAACGAAACTGTTTGTTGACAAGTTCTTGCTCGCAATGGCAGAAGCCACGGATTTGGCACCTATGATGAGAGAGCTACCTCATGAAACAATGGTTAGGCTGCTCACGACCTCAATGCAACTGCTTCTCTCTATAAAGGAGGACAATGCATGGTACAACACGGAAAGCGAGCAGGGTGAGAATGATGGAAAGATGGATGTATACAAATCTGGAATTTTGTTCCTGAGAAAACTTTCAACGGCCTTAGGTGAAAAAAGAATACTTCCTATATGTTTTGAATTGTTCTTGGGGCACATGGAGGCTACCGAGTGGAGGAAACGTCATGCAGGGATTTCTTTGCTAGCAGTGATTGCCGAGGAGTGCTCAGATGAAATGGTTATGAGGAAAGACTGTTTGGACAAAGTTACTGCCATTATTTTGAAGTCATTCAAAGATCCTCATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

440

Amino Acids

49.88

Weight (kDa)

5.62

Isoelectric Point (pI)

42.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_IPO5 PF25780 123 - 277 2.5e-15 IPO5-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 931
AccI GTMKAC 1 cut(s) 1074
AccIII TCCGGA 1 cut(s) 22
AciI CCGC 1 cut(s) 673
AclWI GGATC 1 cut(s) 1301
AcoI YGGCCR 1 cut(s) 422
AcsI RAATTY 2 cut(s) 48, 1086
AcvI CACGTG 1 cut(s) 97
AfaI GTAC 2 cut(s) 831, 1028
AfiI CCNNNNNNNGG 1 cut(s) 1185
AflIII ACRYGT 1 cut(s) 96
AhdI GACNNNNNGTC 1 cut(s) 226
AjnI CCWGG 1 cut(s) 230
AjuI GAANNNNNNNTTGG 2 cut(s) 1250, 1282
AluBI AGCT 5 cut(s) 57, 131, 430, 542, 949
AluI AGCT 5 cut(s) 57, 131, 430, 542, 949
Alw21I GWGCWC 2 cut(s) 59, 1238
Alw26I GTCTC 4 cut(s) 220, 291, 355, 385
AlwI GGATC 1 cut(s) 1301
Aor13HI TCCGGA 1 cut(s) 22
AoxI GGCC 3 cut(s) 275, 422, 1113
ApeKI GCWGC 1 cut(s) 973
ApoI RAATTY 2 cut(s) 48, 1086
Asp700I GAANNNNTTC 2 cut(s) 1105, 1298
AspLEI GCGC 1 cut(s) 241
AspS9I GGNCC 2 cut(s) 123, 228
AsuHPI GGTGA 2 cut(s) 1061, 1133
AsuNHI GCTAGC 1 cut(s) 1213
AvaII GGWCC 2 cut(s) 123, 228
AxyI CCTNAGG 1 cut(s) 1117
BaeGI GKGCMC 1 cut(s) 1167
BalI TGGCCA 1 cut(s) 424
BanI GGYRCC 1 cut(s) 931
BanII GRGCYC 2 cut(s) 59, 395
BauI CACGAG 1 cut(s) 753
BbrPI CACGTG 1 cut(s) 97
BbsI GAAGAC 1 cut(s) 323
Bbv12I GWGCWC 2 cut(s) 59, 1238
BbvI GCAGC 1 cut(s) 960
BccI CCATC 5 cut(s) 427, 700, 831, 1052, 1060
BceAI ACGGC 1 cut(s) 1128
BcgI CGANNNNNNTGC 2 cut(s) 970, 1004
BciT130I CCWGG 1 cut(s) 232
BcoDI GTCTC 4 cut(s) 220, 291, 355, 385
BfaI CTAG 5 cut(s) 225, 552, 827, 851, 1214
BisI GCNGC 1 cut(s) 974
BlsI GCNGC 1 cut(s) 975
BmcAI AGTACT 1 cut(s) 831
Bme1390I CCNGG 1 cut(s) 232
Bme18I GGWCC 2 cut(s) 123, 228
BmeRI GACNNNNNGTC 1 cut(s) 226
BmgT120I GGNCC 2 cut(s) 123, 228
BmiI GGNNCC 5 cut(s) 106, 125, 521, 549, 933
BmrFI CCNGG 1 cut(s) 232
BmtI GCTAGC 1 cut(s) 1217
BpiI GAAGAC 1 cut(s) 323
BplI GAGNNNNNCTC 2 cut(s) 1220, 1252
BpuEI CTTGAG 1 cut(s) 610
BsaAI YACGTR 1 cut(s) 97
BsaBI GATNNNNATC 1 cut(s) 1311
BsaJI CCNNGG 3 cut(s) 405, 921, 1227
BsaWI WCCGGW 2 cut(s) 22, 526
BsaXI ACNNNNNCTCC 5 cut(s) 29, 428, 458, 1177, 1207
Bsc4I CCNNNNNNNGG 1 cut(s) 1185
Bse1I ACTGG 1 cut(s) 683
Bse21I CCTNAGG 1 cut(s) 1117
Bse3DI GCAATG 3 cut(s) 421, 708, 915
Bse8I GATNNNNATC 1 cut(s) 1311
BseAI TCCGGA 1 cut(s) 22
BseBI CCWGG 1 cut(s) 232
BseDI CCNNGG 3 cut(s) 405, 921, 1227
BseGI GGATG 3 cut(s) 796, 1075, 1312
BseJI GATNNNNATC 1 cut(s) 1311
BseLI CCNNNNNNNGG 1 cut(s) 1185
BseMI GCAATG 3 cut(s) 421, 708, 915
BseMII CTCAG 5 cut(s) 44, 387, 812, 1088, 1251
BseNI ACTGG 1 cut(s) 683
BseRI GAGGAG 1 cut(s) 1244
BseSI GKGCMC 1 cut(s) 1167
BseXI GCAGC 1 cut(s) 960
BshFI GGCC 3 cut(s) 277, 424, 1115
BshNI GGYRCC 1 cut(s) 931
BsiHKAI GWGCWC 2 cut(s) 59, 1238
BsiSI CCGG 2 cut(s) 23, 527
BslFI GGGAC 2 cut(s) 109, 726
BslI CCNNNNNNNGG 1 cut(s) 1185
BsmAI GTCTC 4 cut(s) 220, 291, 355, 385
BsmFI GGGAC 2 cut(s) 109, 726
BsnI GGCC 3 cut(s) 277, 424, 1115
Bsp1286I GDGCHC 4 cut(s) 59, 395, 1167, 1238
Bsp13I TCCGGA 1 cut(s) 22
Bsp143I GATC 1 cut(s) 1306
BspACI CCGC 1 cut(s) 673
BspANI GGCC 3 cut(s) 277, 424, 1115
BspCNI CTCAG 5 cut(s) 45, 388, 811, 1089, 1250
BspEI TCCGGA 1 cut(s) 22
BspHI TCATGA 1 cut(s) 955
BspLI GGNNCC 5 cut(s) 106, 125, 521, 549, 933
BspOI GCTAGC 1 cut(s) 1217
BspPI GGATC 1 cut(s) 1301
BspQI GCTCTTC 1 cut(s) 182
BspT107I GGYRCC 1 cut(s) 931
BsrDI GCAATG 3 cut(s) 421, 708, 915
BsrI ACTGG 1 cut(s) 683
BssECI CCNNGG 3 cut(s) 405, 921, 1227
BssMI GATC 1 cut(s) 1306
BssNAI GTATAC 1 cut(s) 1075
BssSI CACGAG 1 cut(s) 753
BssT1I CCWWGG 1 cut(s) 405
Bst1107I GTATAC 1 cut(s) 1075
Bst2BI CACGAG 1 cut(s) 753
Bst2UI CCWGG 1 cut(s) 232
Bst4CI ACNGT 3 cut(s) 717, 885, 1265
Bst6I CTCTTC 1 cut(s) 182
BstAPI GCANNNNNTGC 2 cut(s) 629, 1223
BstBAI YACGTR 1 cut(s) 97
BstC8I GCNNGC 5 cut(s) 133, 412, 906, 1043, 1215
BstDEI CTNAG 6 cut(s) 53, 396, 798, 1097, 1117, 1237
BstDSI CCRYGG 1 cut(s) 921
BstF5I GGATG 3 cut(s) 796, 1075, 1312
BstHHI GCGC 1 cut(s) 241
BstKTI GATC 1 cut(s) 1309
BstMAI GTCTC 4 cut(s) 220, 291, 355, 385
BstMBI GATC 1 cut(s) 1306
BstMWI GCNNNNNNNGC 4 cut(s) 629, 758, 847, 1223
BstNI CCWGG 1 cut(s) 232
BstNSI RCATGY 1 cut(s) 841
BstSCI CCNGG 1 cut(s) 230
BstSLI GKGCMC 1 cut(s) 1167
BstV1I GCAGC 1 cut(s) 960
BstV2I GAAGAC 1 cut(s) 323
BstX2I RGATCY 1 cut(s) 1306
BstXI CCANNNNNNTGG 1 cut(s) 928
BstYI RGATCY 1 cut(s) 1306
BstZ17I GTATAC 1 cut(s) 1075
Bsu36I CCTNAGG 1 cut(s) 1117
BsuRI GGCC 3 cut(s) 277, 424, 1115
BtgI CCRYGG 1 cut(s) 921
BtsCI GGATG 3 cut(s) 796, 1075, 1312
BtsI GCAGTG 1 cut(s) 1224
BtsIMutI CAGTG 1 cut(s) 1224
Cac8I GCNNGC 5 cut(s) 133, 412, 906, 1043, 1215
CciI TCATGA 1 cut(s) 955
CfoI GCGC 1 cut(s) 241
Cfr13I GGNCC 2 cut(s) 123, 228
Csp6I GTAC 2 cut(s) 830, 1027
CspCI CAANNNNNGTGG 2 cut(s) 690, 725
CviAII CATG 7 cut(s) 307, 787, 838, 956, 1023, 1168, 1196
CviQI GTAC 2 cut(s) 830, 1027
DdeI CTNAG 6 cut(s) 53, 396, 798, 1097, 1117, 1237
DpnI GATC 1 cut(s) 1308
DpnII GATC 1 cut(s) 1306
DriI GACNNNNNGTC 1 cut(s) 226
EaeI YGGCCR 1 cut(s) 422
Eam1104I CTCTTC 1 cut(s) 182
Eam1105I GACNNNNNGTC 1 cut(s) 226
EarI CTCTTC 1 cut(s) 182
EciI GGCGGA 1 cut(s) 688
Ecl136II GAGCTC 1 cut(s) 57
Eco130I CCWWGG 1 cut(s) 405
Eco24I GRGCYC 2 cut(s) 59, 395
Eco47I GGWCC 2 cut(s) 123, 228
Eco53kI GAGCTC 1 cut(s) 57
Eco72I CACGTG 1 cut(s) 97
Eco81I CCTNAGG 1 cut(s) 1117
EcoICRI GAGCTC 1 cut(s) 57
EcoO109I RGGNCCY 1 cut(s) 123
EcoRI GAATTC 1 cut(s) 48
EcoRII CCWGG 1 cut(s) 230
EcoT14I CCWWGG 1 cut(s) 405
EcoT22I ATGCAT 1 cut(s) 1024
EcoT38I GRGCYC 2 cut(s) 59, 395
ErhI CCWWGG 1 cut(s) 405
FaeI CATG 7 cut(s) 310, 790, 841, 959, 1026, 1171, 1199
FaqI GGGAC 2 cut(s) 109, 726
FatI CATG 7 cut(s) 306, 786, 837, 955, 1022, 1167, 1195
FblI GTMKAC 1 cut(s) 1074
Fnu4HI GCNGC 1 cut(s) 974
FokI GGATG 3 cut(s) 803, 1082, 1299
FriOI GRGCYC 2 cut(s) 59, 395
Fsp4HI GCNGC 1 cut(s) 974
FspBI CTAG 5 cut(s) 225, 552, 827, 851, 1214
GlaI GCGC 1 cut(s) 240
GluI GCNGC 1 cut(s) 974
HaeIII GGCC 3 cut(s) 277, 424, 1115
HapII CCGG 2 cut(s) 23, 527
HhaI GCGC 1 cut(s) 241
Hin1II CATG 7 cut(s) 310, 790, 841, 959, 1026, 1171, 1199
Hin6I GCGC 1 cut(s) 239
HinP1I GCGC 1 cut(s) 239
HincII GTYRAC 1 cut(s) 892
HindII GTYRAC 1 cut(s) 892
HindIII AAGCTT 2 cut(s) 129, 540
HinfI GANTC 2 cut(s) 8, 730
HpaII CCGG 2 cut(s) 23, 527
HphI GGTGA 2 cut(s) 1061, 1133
Hpy166II GTNNAC 4 cut(s) 657, 665, 892, 1075
Hpy188I TCNGA 8 cut(s) 13, 54, 220, 385, 397, 463, 801, 1240
Hpy188III TCNNGA 6 cut(s) 23, 335, 956, 979, 1083, 1096
Hpy8I GTNNAC 4 cut(s) 657, 665, 892, 1075
HpyCH4III ACNGT 3 cut(s) 717, 885, 1265
HpyCH4IV ACGT 2 cut(s) 96, 1192
HpyCH4V TGCA 9 cut(s) 31, 135, 153, 478, 488, 623, 991, 1022, 1199
HpyF10VI GCNNNNNNNGC 4 cut(s) 629, 758, 847, 1223
HpyF3I CTNAG 6 cut(s) 53, 396, 798, 1097, 1117, 1237
HpySE526I ACGT 2 cut(s) 96, 1192
Hsp92II CATG 7 cut(s) 310, 790, 841, 959, 1026, 1171, 1199
HspAI GCGC 1 cut(s) 239
Kpn2I TCCGGA 1 cut(s) 22
Kzo9I GATC 1 cut(s) 1306
LguI GCTCTTC 1 cut(s) 182
LmnI GCTCC 2 cut(s) 62, 110
Lsp1109I GCAGC 1 cut(s) 960
MaeI CTAG 5 cut(s) 225, 552, 827, 851, 1214
MaeII ACGT 2 cut(s) 96, 1192
MaeIII GTNAC 5 cut(s) 266, 616, 731, 865, 1276
MalI GATC 1 cut(s) 1308
MboI GATC 1 cut(s) 1306
MboII GAAGA 3 cut(s) 169, 323, 755
MflI RGATCY 1 cut(s) 1306
MhlI GDGCHC 4 cut(s) 59, 395, 1167, 1238
MlsI TGGCCA 1 cut(s) 424
MluCI AATT 6 cut(s) 26, 48, 291, 301, 1086, 1151
MluNI TGGCCA 1 cut(s) 424
MlyI GAGTC 2 cut(s) 17, 739
MmeI TCCRAC 1 cut(s) 84
Mox20I TGGCCA 1 cut(s) 424
Mph1103I ATGCAT 1 cut(s) 1024
MroI TCCGGA 1 cut(s) 22
MroXI GAANNNNTTC 2 cut(s) 1105, 1298
MscI TGGCCA 1 cut(s) 424
MseI TTAA 5 cut(s) 684, 720, 773, 819, 843
Msp20I TGGCCA 1 cut(s) 424
MspI CCGG 2 cut(s) 23, 527
MspR9I CCNGG 1 cut(s) 232
MvaI CCWGG 1 cut(s) 232
MwoI GCNNNNNNNGC 4 cut(s) 629, 758, 847, 1223
NdeII GATC 1 cut(s) 1306
NheI GCTAGC 1 cut(s) 1213
NlaIII CATG 7 cut(s) 310, 790, 841, 959, 1026, 1171, 1199
NlaIV GGNNCC 5 cut(s) 106, 125, 521, 549, 933
NmeAIII GCCGAG 2 cut(s) 551, 1252
NmuCI GTSAC 3 cut(s) 266, 731, 865
NsiI ATGCAT 1 cut(s) 1024
NspI RCATGY 1 cut(s) 841
PagI TCATGA 1 cut(s) 955
PciSI GCTCTTC 1 cut(s) 182
PdmI GAANNNNTTC 2 cut(s) 1105, 1298
PkrI GCNGC 1 cut(s) 975
PleI GAGTC 2 cut(s) 16, 738
PmaCI CACGTG 1 cut(s) 97
PmlI CACGTG 1 cut(s) 97
PpsI GAGTC 2 cut(s) 16, 738
Ppu21I YACGTR 1 cut(s) 97
PpuMI RGGWCCY 1 cut(s) 123
Psp124BI GAGCTC 1 cut(s) 59
Psp5II RGGWCCY 1 cut(s) 123
Psp6I CCWGG 1 cut(s) 230
PspCI CACGTG 1 cut(s) 97
PspGI CCWGG 1 cut(s) 230
PspN4I GGNNCC 5 cut(s) 106, 125, 521, 549, 933
PspPI GGNCC 2 cut(s) 123, 228
PspPPI RGGWCCY 1 cut(s) 123
PsuI RGATCY 1 cut(s) 1306
RsaI GTAC 2 cut(s) 831, 1028
RsaNI GTAC 2 cut(s) 830, 1027
SacI GAGCTC 1 cut(s) 59
SapI GCTCTTC 1 cut(s) 182
SaqAI TTAA 5 cut(s) 684, 720, 773, 819, 843
SatI GCNGC 1 cut(s) 974
Sau3AI GATC 1 cut(s) 1306
Sau96I GGNCC 2 cut(s) 123, 228
ScaI AGTACT 1 cut(s) 831
SchI GAGTC 2 cut(s) 17, 739
ScrFI CCNGG 1 cut(s) 232
SduI GDGCHC 4 cut(s) 59, 395, 1167, 1238
SinI GGWCC 2 cut(s) 123, 228
SmlI CTYRAG 1 cut(s) 589
SmoI CTYRAG 1 cut(s) 589
Sse9I AATT 6 cut(s) 26, 48, 291, 301, 1086, 1151
SsiI CCGC 1 cut(s) 673
SspI AATATT 1 cut(s) 579
SspMI CTAG 5 cut(s) 225, 552, 827, 851, 1214
SstI GAGCTC 1 cut(s) 59
StyD4I CCNGG 1 cut(s) 230
StyI CCWWGG 1 cut(s) 405
TaaI ACNGT 3 cut(s) 717, 885, 1265
TaiI ACGT 2 cut(s) 99, 1195
TaqI TCGA 1 cut(s) 834
TasI AATT 6 cut(s) 26, 48, 291, 301, 1086, 1151
TatI WGTACW 1 cut(s) 829
Tru1I TTAA 5 cut(s) 684, 720, 773, 819, 843
Tru9I TTAA 5 cut(s) 684, 720, 773, 819, 843
TscAI CASTG 1 cut(s) 1224
TseFI GTSAC 3 cut(s) 266, 731, 865
TseI GCWGC 1 cut(s) 973
Tsp45I GTSAC 3 cut(s) 266, 731, 865
TspDTI ATGAA 5 cut(s) 169, 323, 483, 972, 1257
TspGWI ACGGA 4 cut(s) 60, 512, 938, 1049
TspRI CASTG 1 cut(s) 1224
VpaK11BI GGWCC 2 cut(s) 123, 228
XapI RAATTY 2 cut(s) 48, 1086
XceI RCATGY 1 cut(s) 841
XmiI GTMKAC 1 cut(s) 1074
XmnI GAANNNNTTC 2 cut(s) 1105, 1298
XspI CTAG 5 cut(s) 225, 552, 827, 851, 1214
ZrmI AGTACT 1 cut(s) 831
Zsp2I ATGCAT 1 cut(s) 1024
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.