Rh4AG005200

ribosomal protein import into nucleus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0004228
Physical Location & Seq
Reverse (-)
792439 .. 797767
5329 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG005200.1

Sequence Viewer

Length: 1608 bp
ATGATGGAGTCGGAGTTTCCTCAGGAATTGCAAACACAAGCCTACGGAATTCTGAGCTCCAACGATGTTGAGCCATTGGAAACACTCTTTTCTCACGTGTTTGGCTCCCAAGAACCCCAAAGGTCCCAAGCTTACACCTTTTTACATTGTTGCAAAAAGCACTTCCCACATTTGCTCTTCATAAAACTCTTTTTTGTTATTAGATGTAGCCCTGTCTCTGACACTAGGTCCAGGTCTGCGCTTGTGCTTCGTTATCTCAAAATCTGTGACCTTTGGCCTAACTTGTCTCTAATTGCTCAAAATTACATGAAATCCCACTTCCTTGTTTGTCTTCAAGAGGAAGTTTCAATGCCCACTTTGAGACTACTTTGTGGCATTGTCTCTGAAATGGGCTCTGAGATTTCCAAGGCTGGCAATGAGAGGCCAGAGCTGATGGAGTTTTTGTTGAACTCTATTCAATCGGATTATGAAAAGTTGCAACAATGTGCATTATGGGTGTTGGCTTATTTGCCAAAAGGGTTCCGTCCGGTTGTTTGTGAAGCTTTGGTTCCCAGCCTTGAACCTTTACACTCAGCAATATTACAAGCCTTGAGTTCCTCCAATGCTGATATTCAGGTTACTGCATTTGGTGCTGTGGTTAGTTTGATAGGTTTGTTTAAGAGTTCAAAGGGGCGGAACTGGTTTAATGACCTTTTGAGAGCAATGATGGTGGGACTGTTTAACTTGTTGAGTCACTTGAAAGAAGAATATGCTCGTGGGGCTGTCAATGAGTTAATAATGCTGGTCATGGATGAGCCTCAGATGTTGAAGCCATACCTTAACCATCTAGTACTCGACATGCTTAATGTGCTAGAGTGTAAAAAAGTGACAGATGAAACGAAACTGTTTGTTGACAAGTTCTTGCTCGCAATGGCAGAAGCCACGGATTTGGCACCTATGATGAGAGAGCTACCTCATGAAACAATGTTTAGGCTGCTCACGACCTCAATGCAACTGCTTCTCTCTATAAAGGATGACAATGCATGTTACAACACTGAAAGCGAGCAGGGTGAGAATGATGGAAAGATGGATGTATACAAATCTGGATTTTTGTTCCTGAGGAAACTTTCAACGGCCTTAGGTGAAAAAAGAATACTTCCTATATGTTTTGAATTGTTCTTGGGGCACATGGAGGCTACCGAGTGGAAGAAACGTTATGCAGGGATTTCTTTGCTAGCAGTGATTGCCGAGGAGTGCTCAGATGAAATGGTTATGAGGAAAGACTGTTTGGACCAAGTTATTGCCATTATTTTGAAGTCATTCAAAGATCCTCATCCTCGAGTTTGTTGGGCAGCTTTTAATTTTATGCAACAGCCTACAAATCTGGTCCAGACAATGCAAATTCTCTATCATTTGAAGATTGTCTATGCACTGGACGCTGCACTTGACCAACACCGGAACCCAACAGTCAAGGAACAAGTTGTCTCAGCTTTACAATACTTGTTAAAGAATGTTCCTTCAGATAGCTTAAGAATGCACACAGACTTGGATACTATATTGTGGAAGTTGCAGAAAGAACCACAGAAAACCAATCAGAATGCGTCAGCTTTAAGGGATCTGCAGCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

535

Amino Acids

61.11

Weight (kDa)

5.91

Isoelectric Point (pI)

41.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_IPO5 PF25780 123 - 277 3.5e-12 IPO5-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 931
AccI GTMKAC 1 cut(s) 1074
AciI CCGC 1 cut(s) 673
AclI AACGTT 1 cut(s) 1192
AclWI GGATC 2 cut(s) 1301, 1602
AcsI RAATTY 2 cut(s) 48, 1380
AcuI CTGAAG 1 cut(s) 1482
AcvI CACGTG 1 cut(s) 97
AfaI GTAC 1 cut(s) 831
AflII CTTAAG 1 cut(s) 1507
AflIII ACRYGT 1 cut(s) 96
AhdI GACNNNNNGTC 1 cut(s) 226
AjnI CCWGG 1 cut(s) 230
AjuI GAANNNNNNNTTGG 2 cut(s) 1250, 1282
Alw21I GWGCWC 2 cut(s) 59, 1238
Alw26I GTCTC 5 cut(s) 220, 291, 355, 385, 1468
AlwI GGATC 2 cut(s) 1301, 1602
Ama87I CYCGRG 1 cut(s) 1317
AoxI GGCC 3 cut(s) 275, 422, 1113
ApeKI GCWGC 4 cut(s) 973, 1331, 1418, 1600
ApoI RAATTY 2 cut(s) 48, 1380
Asp700I GAANNNNTTC 1 cut(s) 1298
AspLEI GCGC 1 cut(s) 241
AspS9I GGNCC 4 cut(s) 123, 228, 1270, 1366
AsuHPI GGTGA 2 cut(s) 1061, 1133
AsuNHI GCTAGC 1 cut(s) 1213
AvaI CYCGRG 1 cut(s) 1317
AvaII GGWCC 4 cut(s) 123, 228, 1270, 1366
AxyI CCTNAGG 3 cut(s) 21, 1097, 1117
BaeGI GKGCMC 1 cut(s) 1167
BanI GGYRCC 1 cut(s) 931
BanII GRGCYC 2 cut(s) 59, 395
BauI CACGAG 1 cut(s) 753
BbrPI CACGTG 1 cut(s) 97
BbsI GAAGAC 1 cut(s) 323
Bbv12I GWGCWC 2 cut(s) 59, 1238
BbvI GCAGC 3 cut(s) 960, 1343, 1405
BccI CCATC 5 cut(s) 427, 700, 831, 1052, 1060
BceAI ACGGC 1 cut(s) 1128
BcgI CGANNNNNNTGC 2 cut(s) 970, 1004
BciT130I CCWGG 1 cut(s) 232
BciVI GTATCC 1 cut(s) 1522
BcoDI GTCTC 5 cut(s) 220, 291, 355, 385, 1468
BfaI CTAG 4 cut(s) 225, 827, 851, 1214
BfmI CTRYAG 1 cut(s) 1598
BfrI CTTAAG 1 cut(s) 1507
BfuI GTATCC 1 cut(s) 1522
BisI GCNGC 4 cut(s) 974, 1332, 1419, 1601
BlsI GCNGC 4 cut(s) 975, 1333, 1420, 1602
BmcAI AGTACT 1 cut(s) 831
Bme1390I CCNGG 1 cut(s) 232
Bme18I GGWCC 4 cut(s) 123, 228, 1270, 1366
BmeRI GACNNNNNGTC 1 cut(s) 226
BmeT110I CYCGRG 1 cut(s) 1317
BmgT120I GGNCC 4 cut(s) 123, 228, 1270, 1366
BmiI GGNNCC 6 cut(s) 106, 125, 521, 549, 933, 1439
BmrFI CCNGG 1 cut(s) 232
BmtI GCTAGC 1 cut(s) 1217
BpiI GAAGAC 1 cut(s) 323
BplI GAGNNNNNCTC 2 cut(s) 1220, 1252
BpuEI CTTGAG 1 cut(s) 610
BsaAI YACGTR 1 cut(s) 97
BsaBI GATNNNNATC 1 cut(s) 1311
BsaJI CCNNGG 3 cut(s) 405, 921, 1227
BsaWI WCCGGW 2 cut(s) 526, 1434
BsaXI ACNNNNNCTCC 3 cut(s) 29, 428, 458
Bse1I ACTGG 2 cut(s) 683, 1416
Bse21I CCTNAGG 3 cut(s) 21, 1097, 1117
Bse3DI GCAATG 3 cut(s) 421, 708, 915
Bse8I GATNNNNATC 1 cut(s) 1311
BseBI CCWGG 1 cut(s) 232
BseDI CCNNGG 3 cut(s) 405, 921, 1227
BseGI GGATG 4 cut(s) 796, 1018, 1075, 1312
BseJI GATNNNNATC 1 cut(s) 1311
BseMI GCAATG 3 cut(s) 421, 708, 915
BseMII CTCAG 8 cut(s) 35, 44, 387, 585, 812, 1088, 1251, 1479
BseNI ACTGG 2 cut(s) 683, 1416
BseRI GAGGAG 1 cut(s) 1244
BseSI GKGCMC 1 cut(s) 1167
BseXI GCAGC 3 cut(s) 960, 1343, 1405
BseYI CCCAGC 1 cut(s) 551
BsgI GTGCAG 1 cut(s) 1404
BshFI GGCC 3 cut(s) 277, 424, 1115
BshNI GGYRCC 1 cut(s) 931
BsiHKAI GWGCWC 2 cut(s) 59, 1238
BsiHKCI CYCGRG 1 cut(s) 1317
BsiSI CCGG 2 cut(s) 527, 1435
BslFI GGGAC 2 cut(s) 109, 726
BsmAI GTCTC 5 cut(s) 220, 291, 355, 385, 1468
BsmFI GGGAC 2 cut(s) 109, 726
BsmI GAATGC 2 cut(s) 1518, 1582
BsnI GGCC 3 cut(s) 277, 424, 1115
BsoBI CYCGRG 1 cut(s) 1317
Bsp1286I GDGCHC 4 cut(s) 59, 395, 1167, 1238
Bsp143I GATC 2 cut(s) 1306, 1594
BspACI CCGC 1 cut(s) 673
BspANI GGCC 3 cut(s) 277, 424, 1115
BspCNI CTCAG 8 cut(s) 34, 45, 388, 584, 811, 1089, 1250, 1478
BspHI TCATGA 1 cut(s) 955
BspLI GGNNCC 6 cut(s) 106, 125, 521, 549, 933, 1439
BspMAI CTGCAG 1 cut(s) 1602
BspOI GCTAGC 1 cut(s) 1217
BspPI GGATC 2 cut(s) 1301, 1602
BspQI GCTCTTC 1 cut(s) 182
BspT107I GGYRCC 1 cut(s) 931
BspTI CTTAAG 1 cut(s) 1507
BsrDI GCAATG 3 cut(s) 421, 708, 915
BsrI ACTGG 2 cut(s) 683, 1416
BssECI CCNNGG 3 cut(s) 405, 921, 1227
BssMI GATC 2 cut(s) 1306, 1594
BssNAI GTATAC 1 cut(s) 1075
BssSI CACGAG 1 cut(s) 753
BssT1I CCWWGG 1 cut(s) 405
Bst1107I GTATAC 1 cut(s) 1075
Bst2BI CACGAG 1 cut(s) 753
Bst2UI CCWGG 1 cut(s) 232
Bst4CI ACNGT 4 cut(s) 717, 885, 1265, 1447
Bst6I CTCTTC 1 cut(s) 182
BstAFI CTTAAG 1 cut(s) 1507
BstAPI GCANNNNNTGC 2 cut(s) 629, 1223
BstBAI YACGTR 1 cut(s) 97
BstC8I GCNNGC 4 cut(s) 412, 906, 1043, 1215
BstDEI CTNAG 9 cut(s) 21, 53, 396, 571, 798, 1097, 1117, 1237, 1465
BstDSI CCRYGG 1 cut(s) 921
BstF5I GGATG 4 cut(s) 796, 1018, 1075, 1312
BstHHI GCGC 1 cut(s) 241
BstKTI GATC 2 cut(s) 1309, 1597
BstMAI GTCTC 5 cut(s) 220, 291, 355, 385, 1468
BstMBI GATC 2 cut(s) 1306, 1594
BstMWI GCNNNNNNNGC 5 cut(s) 629, 758, 847, 1223, 1415
BstNI CCWGG 1 cut(s) 232
BstNSI RCATGY 2 cut(s) 841, 1026
BstSCI CCNGG 1 cut(s) 230
BstSFI CTRYAG 1 cut(s) 1598
BstSLI GKGCMC 1 cut(s) 1167
BstV1I GCAGC 3 cut(s) 960, 1343, 1405
BstV2I GAAGAC 1 cut(s) 323
BstX2I RGATCY 2 cut(s) 1306, 1594
BstXI CCANNNNNNTGG 1 cut(s) 928
BstYI RGATCY 2 cut(s) 1306, 1594
BstZ17I GTATAC 1 cut(s) 1075
Bsu36I CCTNAGG 3 cut(s) 21, 1097, 1117
BsuI GTATCC 1 cut(s) 1522
BsuRI GGCC 3 cut(s) 277, 424, 1115
BtgI CCRYGG 1 cut(s) 921
BtsCI GGATG 4 cut(s) 796, 1018, 1075, 1312
BtsI GCAGTG 1 cut(s) 1224
BtsIMutI CAGTG 3 cut(s) 1032, 1224, 1409
Cac8I GCNNGC 4 cut(s) 412, 906, 1043, 1215
CciI TCATGA 1 cut(s) 955
CfoI GCGC 1 cut(s) 241
Cfr13I GGNCC 4 cut(s) 123, 228, 1270, 1366
CseI GACGC 2 cut(s) 1424, 1569
Csp6I GTAC 1 cut(s) 830
CspCI CAANNNNNGTGG 2 cut(s) 690, 725
CviAII CATG 6 cut(s) 307, 787, 838, 956, 1023, 1168
CviQI GTAC 1 cut(s) 830
DdeI CTNAG 9 cut(s) 21, 53, 396, 571, 798, 1097, 1117, 1237, 1465
DpnI GATC 2 cut(s) 1308, 1596
DpnII GATC 2 cut(s) 1306, 1594
DriI GACNNNNNGTC 1 cut(s) 226
Eam1104I CTCTTC 1 cut(s) 182
Eam1105I GACNNNNNGTC 1 cut(s) 226
EarI CTCTTC 1 cut(s) 182
EciI GGCGGA 1 cut(s) 688
Ecl136II GAGCTC 1 cut(s) 57
Eco130I CCWWGG 1 cut(s) 405
Eco24I GRGCYC 2 cut(s) 59, 395
Eco47I GGWCC 4 cut(s) 123, 228, 1270, 1366
Eco53kI GAGCTC 1 cut(s) 57
Eco57I CTGAAG 1 cut(s) 1482
Eco72I CACGTG 1 cut(s) 97
Eco81I CCTNAGG 3 cut(s) 21, 1097, 1117
Eco88I CYCGRG 1 cut(s) 1317
EcoICRI GAGCTC 1 cut(s) 57
EcoO109I RGGNCCY 1 cut(s) 123
EcoRI GAATTC 1 cut(s) 48
EcoRII CCWGG 1 cut(s) 230
EcoT14I CCWWGG 1 cut(s) 405
EcoT22I ATGCAT 1 cut(s) 1024
EcoT38I GRGCYC 2 cut(s) 59, 395
ErhI CCWWGG 1 cut(s) 405
FaeI CATG 6 cut(s) 310, 790, 841, 959, 1026, 1171
FaqI GGGAC 2 cut(s) 109, 726
FatI CATG 6 cut(s) 306, 786, 837, 955, 1022, 1167
FblI GTMKAC 1 cut(s) 1074
Fnu4HI GCNGC 4 cut(s) 974, 1332, 1419, 1601
FokI GGATG 4 cut(s) 803, 1025, 1082, 1299
FriOI GRGCYC 2 cut(s) 59, 395
Fsp4HI GCNGC 4 cut(s) 974, 1332, 1419, 1601
FspBI CTAG 4 cut(s) 225, 827, 851, 1214
GlaI GCGC 1 cut(s) 240
GluI GCNGC 4 cut(s) 974, 1332, 1419, 1601
GsaI CCCAGC 1 cut(s) 555
HaeIII GGCC 3 cut(s) 277, 424, 1115
HapII CCGG 2 cut(s) 527, 1435
HgaI GACGC 2 cut(s) 1424, 1569
HhaI GCGC 1 cut(s) 241
Hin1II CATG 6 cut(s) 310, 790, 841, 959, 1026, 1171
Hin6I GCGC 1 cut(s) 239
HinP1I GCGC 1 cut(s) 239
HincII GTYRAC 1 cut(s) 892
HindII GTYRAC 1 cut(s) 892
HindIII AAGCTT 2 cut(s) 129, 540
HinfI GANTC 2 cut(s) 8, 730
HpaII CCGG 2 cut(s) 527, 1435
HphI GGTGA 2 cut(s) 1061, 1133
Hpy166II GTNNAC 2 cut(s) 892, 1075
Hpy188III TCNNGA 7 cut(s) 23, 335, 956, 979, 1083, 1096, 1369
Hpy8I GTNNAC 2 cut(s) 892, 1075
HpyAV CCTTC 1 cut(s) 1506
HpyCH4III ACNGT 4 cut(s) 717, 885, 1265, 1447
HpyCH4IV ACGT 2 cut(s) 96, 1192
HpyF10VI GCNNNNNNNGC 5 cut(s) 629, 758, 847, 1223, 1415
HpyF3I CTNAG 9 cut(s) 21, 53, 396, 571, 798, 1097, 1117, 1237, 1465
HpySE526I ACGT 2 cut(s) 96, 1192
Hsp92II CATG 6 cut(s) 310, 790, 841, 959, 1026, 1171
HspAI GCGC 1 cut(s) 239
Kzo9I GATC 2 cut(s) 1306, 1594
LguI GCTCTTC 1 cut(s) 182
LmnI GCTCC 2 cut(s) 62, 110
Lsp1109I GCAGC 3 cut(s) 960, 1343, 1405
MaeI CTAG 4 cut(s) 225, 827, 851, 1214
MaeII ACGT 2 cut(s) 96, 1192
MaeIII GTNAC 5 cut(s) 266, 616, 731, 865, 1025
MalI GATC 2 cut(s) 1308, 1596
MboI GATC 2 cut(s) 1306, 1594
MboII GAAGA 5 cut(s) 169, 323, 755, 1198, 1408
MflI RGATCY 2 cut(s) 1306, 1594
MhlI GDGCHC 4 cut(s) 59, 395, 1167, 1238
MluCI AATT 7 cut(s) 26, 48, 291, 301, 1151, 1339, 1380
MlyI GAGTC 2 cut(s) 17, 739
MmeI TCCRAC 1 cut(s) 84
Mph1103I ATGCAT 1 cut(s) 1024
MroXI GAANNNNTTC 1 cut(s) 1298
MspCI CTTAAG 1 cut(s) 1507
MspI CCGG 2 cut(s) 527, 1435
MspR9I CCNGG 1 cut(s) 232
Mva1269I GAATGC 2 cut(s) 1518, 1582
MvaI CCWGG 1 cut(s) 232
MwoI GCNNNNNNNGC 5 cut(s) 629, 758, 847, 1223, 1415
NdeII GATC 2 cut(s) 1306, 1594
NheI GCTAGC 1 cut(s) 1213
NlaIII CATG 6 cut(s) 310, 790, 841, 959, 1026, 1171
NlaIV GGNNCC 6 cut(s) 106, 125, 521, 549, 933, 1439
NmeAIII GCCGAG 1 cut(s) 1252
NmuCI GTSAC 3 cut(s) 266, 731, 865
NsiI ATGCAT 1 cut(s) 1024
NspI RCATGY 2 cut(s) 841, 1026
PaeR7I CTCGAG 1 cut(s) 1317
PagI TCATGA 1 cut(s) 955
PciSI GCTCTTC 1 cut(s) 182
PctI GAATGC 2 cut(s) 1518, 1582
PdmI GAANNNNTTC 1 cut(s) 1298
PkrI GCNGC 4 cut(s) 975, 1333, 1420, 1602
PleI GAGTC 2 cut(s) 16, 738
PmaCI CACGTG 1 cut(s) 97
PmlI CACGTG 1 cut(s) 97
PpsI GAGTC 2 cut(s) 16, 738
Ppu21I YACGTR 1 cut(s) 97
PpuMI RGGWCCY 1 cut(s) 123
Psp124BI GAGCTC 1 cut(s) 59
Psp1406I AACGTT 1 cut(s) 1192
Psp5II RGGWCCY 1 cut(s) 123
Psp6I CCWGG 1 cut(s) 230
PspCI CACGTG 1 cut(s) 97
PspFI CCCAGC 1 cut(s) 551
PspGI CCWGG 1 cut(s) 230
PspN4I GGNNCC 6 cut(s) 106, 125, 521, 549, 933, 1439
PspPI GGNCC 4 cut(s) 123, 228, 1270, 1366
PspPPI RGGWCCY 1 cut(s) 123
PspXI VCTCGAGB 1 cut(s) 1317
PstI CTGCAG 1 cut(s) 1602
PsuI RGATCY 2 cut(s) 1306, 1594
RsaI GTAC 1 cut(s) 831
RsaNI GTAC 1 cut(s) 830
SacI GAGCTC 1 cut(s) 59
SapI GCTCTTC 1 cut(s) 182
SatI GCNGC 4 cut(s) 974, 1332, 1419, 1601
Sau3AI GATC 2 cut(s) 1306, 1594
Sau96I GGNCC 4 cut(s) 123, 228, 1270, 1366
ScaI AGTACT 1 cut(s) 831
SchI GAGTC 2 cut(s) 17, 739
ScrFI CCNGG 1 cut(s) 232
SduI GDGCHC 4 cut(s) 59, 395, 1167, 1238
SfcI CTRYAG 1 cut(s) 1598
Sfr274I CTCGAG 1 cut(s) 1317
SinI GGWCC 4 cut(s) 123, 228, 1270, 1366
SlaI CTCGAG 1 cut(s) 1317
SmlI CTYRAG 3 cut(s) 589, 1317, 1507
SmoI CTYRAG 3 cut(s) 589, 1317, 1507
Sse9I AATT 7 cut(s) 26, 48, 291, 301, 1151, 1339, 1380
SsiI CCGC 1 cut(s) 673
SspI AATATT 1 cut(s) 579
SspMI CTAG 4 cut(s) 225, 827, 851, 1214
SstI GAGCTC 1 cut(s) 59
StyD4I CCNGG 1 cut(s) 230
StyI CCWWGG 1 cut(s) 405
TaaI ACNGT 4 cut(s) 717, 885, 1265, 1447
TaiI ACGT 2 cut(s) 99, 1195
TaqI TCGA 2 cut(s) 834, 1318
TasI AATT 7 cut(s) 26, 48, 291, 301, 1151, 1339, 1380
TatI WGTACW 1 cut(s) 829
TscAI CASTG 3 cut(s) 1039, 1224, 1416
TseFI GTSAC 3 cut(s) 266, 731, 865
TseI GCWGC 4 cut(s) 973, 1331, 1418, 1600
Tsp45I GTSAC 3 cut(s) 266, 731, 865
TspDTI ATGAA 6 cut(s) 169, 323, 483, 888, 972, 1257
TspGWI ACGGA 3 cut(s) 60, 512, 938
TspRI CASTG 3 cut(s) 1039, 1224, 1416
Vha464I CTTAAG 1 cut(s) 1507
VpaK11BI GGWCC 4 cut(s) 123, 228, 1270, 1366
XapI RAATTY 2 cut(s) 48, 1380
XceI RCATGY 2 cut(s) 841, 1026
XhoI CTCGAG 1 cut(s) 1317
XmiI GTMKAC 1 cut(s) 1074
XmnI GAANNNNTTC 1 cut(s) 1298
XspI CTAG 4 cut(s) 225, 827, 851, 1214
ZrmI AGTACT 1 cut(s) 831
Zsp2I ATGCAT 1 cut(s) 1024
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.