Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0004228

Physical Location & Seq

Genomic Coordinates Forward (+)

11964388 .. 11966930

Gene Structure 2543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG080400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGATTGGAAATGCCAAATTGGTATTCGCGGTGGACTACGGCCAGGTTTCTCATCGTCGACGCCGATAACGTCCGCAAGGAATGCTGCCAGGACCGGTAACGATGCTATTGCTTACCTCAACCTTGTGCAGGTAATTAGGAGAGACTGTTTGGACCAAGTTACTGCCATTATTCTGAAGTCATTCAAAGATCCTCATCCTCGAGTTTGTTGGGCAGCTTTTAATTTTATGCAACAGCCTACAAATCGGGTTCAGGCAATACAAATTCTCTATCATTGGAGGCTTCACTATGCACAAGACGCCACAGTTGACCATCACCGGAATCCAGGAGTTAAGATATCACTTTTGATTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

118

Amino Acids

13.35

Weight (kDa)

9.93

Isoelectric Point (pI)

27.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004228)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00410
malus_domestica	MD04G1004400.v1.1 MD17G1181400.v1.1
prunus_persica	Prupe.1G004100_v2.0.a1
pyrus_communis	pycom04g00450
rosa_chinensis	RchiOBHm_Chr4g0385811
rosa_laevigata	RLG00000010206 RLG00000010212 RLG00000010227 RLG00000010229
rosa_multiflora	Rmu_co8457409.1_g000001 Rmu_sc0004773.1_g000002 Rmu_sc0008728.1_g000012 Rmu_sc0015537.1_g000002 Rmu_sc0029486.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333310
rosa_rugosa	Rorug03G0060400 Rorug03G0300500 Rorug03G0300900 Rorug04G0011200
rosa_samantha	Rh4AG004500 Rh4AG004800 Rh4AG005200 Rh4AG005600 Rh4BG004100 Rh4DG004300 Rh4DG004700 Rh4DG005900 Rh4DG006200 Rh4DG080400
rosa_wichuraiana	Rw4G000410 Rw4G000420 Rw4G000430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	121
AccI	GTMKAC	1 cut(s)	59
AccII	CGCG	1 cut(s)	30
AciI	CCGC	2 cut(s)	30, 75
AclWI	GGATC	1 cut(s)	185
AcoI	YGGCCR	1 cut(s)	41
AcsI	RAATTY	1 cut(s)	264
AcuI	CTGAAG	1 cut(s)	197
AcyI	GRCGYC	2 cut(s)	62, 300
AfiI	CCNNNNNNNGG	1 cut(s)	130
AgeI	ACCGGT	1 cut(s)	95
AgsI	TTSAA	1 cut(s)	187
AjnI	CCWGG	3 cut(s)	43, 89, 325
AjuI	GAANNNNNNNTTGG	2 cut(s)	9, 41
AluBI	AGCT	1 cut(s)	218
AluI	AGCT	1 cut(s)	218
Alw26I	GTCTC	1 cut(s)	138
AlwI	GGATC	1 cut(s)	185
Ama87I	CYCGRG	1 cut(s)	201
AoxI	GGCC	1 cut(s)	41
ApeKI	GCWGC	2 cut(s)	86, 215
ApoI	RAATTY	1 cut(s)	264
AsiGI	ACCGGT	1 cut(s)	95
Asp700I	GAANNNNTTC	1 cut(s)	182
AspS9I	GGNCC	2 cut(s)	93, 154
AsuHPI	GGTGA	1 cut(s)	308
AvaI	CYCGRG	1 cut(s)	201
AvaII	GGWCC	2 cut(s)	93, 154
BbvI	GCAGC	2 cut(s)	73, 227
BccI	CCATC	1 cut(s)	321
BceAI	ACGGC	1 cut(s)	56
BcgI	CGANNNNNNTGC	2 cut(s)	92, 126
BciT130I	CCWGG	3 cut(s)	45, 91, 327
BcoDI	GTCTC	1 cut(s)	138
BfuAI	ACCTGC	1 cut(s)	121
BisI	GCNGC	2 cut(s)	87, 216
BlsI	GCNGC	2 cut(s)	88, 217
Bme1390I	CCNGG	3 cut(s)	45, 91, 327
Bme18I	GGWCC	2 cut(s)	93, 154
BmeT110I	CYCGRG	1 cut(s)	201
BmgT120I	GGNCC	2 cut(s)	93, 154
BmrFI	CCNGG	3 cut(s)	45, 91, 327
BmsI	GCATC	1 cut(s)	94
BsaBI	GATNNNNATC	1 cut(s)	195
BsaHI	GRCGYC	2 cut(s)	62, 300
BsaWI	WCCGGW	2 cut(s)	95, 318
BsaXI	ACNNNNNCTCC	2 cut(s)	133, 163
Bsc4I	CCNNNNNNNGG	1 cut(s)	130
Bse118I	RCCGGY	1 cut(s)	95
Bse8I	GATNNNNATC	1 cut(s)	195
BseBI	CCWGG	3 cut(s)	45, 91, 327
BseGI	GGATG	1 cut(s)	196
BseJI	GATNNNNATC	1 cut(s)	195
BseLI	CCNNNNNNNGG	1 cut(s)	130
BseXI	GCAGC	2 cut(s)	73, 227
BsgI	GTGCAG	1 cut(s)	149
Bsh1236I	CGCG	1 cut(s)	30
BshFI	GGCC	1 cut(s)	43
BshTI	ACCGGT	1 cut(s)	95
BsiHKCI	CYCGRG	1 cut(s)	201
BsiSI	CCGG	2 cut(s)	96, 319
BslI	CCNNNNNNNGG	1 cut(s)	130
BsmAI	GTCTC	1 cut(s)	138
BsmI	GAATGC	1 cut(s)	88
BsnI	GGCC	1 cut(s)	43
BsoBI	CYCGRG	1 cut(s)	201
Bsp143I	GATC	1 cut(s)	190
BspACI	CCGC	2 cut(s)	30, 75
BspANI	GGCC	1 cut(s)	43
BspFNI	CGCG	1 cut(s)	30
BspMI	ACCTGC	1 cut(s)	121
BspPI	GGATC	1 cut(s)	185
BsrFI	RCCGGY	1 cut(s)	95
BssAI	RCCGGY	1 cut(s)	95
BssMI	GATC	1 cut(s)	190
BssNI	GRCGYC	2 cut(s)	62, 300
Bst2UI	CCWGG	3 cut(s)	45, 91, 327
Bst4CI	ACNGT	2 cut(s)	149, 307
BstACI	GRCGYC	2 cut(s)	62, 300
BstAPI	GCANNNNNTGC	1 cut(s)	83
BstENI	CCTNNNNNAGG	1 cut(s)	128
BstF5I	GGATG	1 cut(s)	196
BstFNI	CGCG	1 cut(s)	30
BstKTI	GATC	1 cut(s)	193
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	1 cut(s)	190
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 299
BstNI	CCWGG	3 cut(s)	45, 91, 327
BstSCI	CCNGG	3 cut(s)	43, 89, 325
BstUI	CGCG	1 cut(s)	30
BstV1I	GCAGC	2 cut(s)	73, 227
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
BsuRI	GGCC	1 cut(s)	43
BtsCI	GGATG	1 cut(s)	196
BveI	ACCTGC	1 cut(s)	121
Cfr10I	RCCGGY	1 cut(s)	95
Cfr13I	GGNCC	2 cut(s)	93, 154
CseI	GACGC	2 cut(s)	70, 308
CspAI	ACCGGT	1 cut(s)	95
CviJI	RGCY	4 cut(s)	43, 218, 238, 283
CviKI_1	RGCY	4 cut(s)	43, 218, 238, 283
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
EaeI	YGGCCR	1 cut(s)	41
Eco32I	GATATC	1 cut(s)	339
Eco47I	GGWCC	2 cut(s)	93, 154
Eco57I	CTGAAG	1 cut(s)	197
Eco88I	CYCGRG	1 cut(s)	201
EcoNI	CCTNNNNNAGG	1 cut(s)	128
EcoRII	CCWGG	3 cut(s)	43, 89, 325
EcoRV	GATATC	1 cut(s)	339
FaiI	YATR	2 cut(s)	230, 291
FblI	GTMKAC	1 cut(s)	59
Fnu4HI	GCNGC	2 cut(s)	87, 216
FokI	GGATG	1 cut(s)	183
Fsp4HI	GCNGC	2 cut(s)	87, 216
GluI	GCNGC	2 cut(s)	87, 216
HaeIII	GGCC	1 cut(s)	43
HapII	CCGG	2 cut(s)	96, 319
HgaI	GACGC	2 cut(s)	70, 308
Hin1I	GRCGYC	2 cut(s)	62, 300
HincII	GTYRAC	2 cut(s)	60, 310
HindII	GTYRAC	2 cut(s)	60, 310
HinfI	GANTC	1 cut(s)	322
HpaII	CCGG	2 cut(s)	96, 319
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	3 cut(s)	35, 60, 310
Hpy188I	TCNGA	1 cut(s)	177
Hpy8I	GTNNAC	3 cut(s)	35, 60, 310
Hpy99I	CGWCG	2 cut(s)	61, 64
HpyCH4III	ACNGT	2 cut(s)	149, 307
HpyCH4IV	ACGT	1 cut(s)	71
HpyCH4V	TGCA	3 cut(s)	130, 232, 293
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 299
HpySE526I	ACGT	1 cut(s)	71
Hsp92I	GRCGYC	2 cut(s)	62, 300
Kzo9I	GATC	1 cut(s)	190
Lsp1109I	GCAGC	2 cut(s)	73, 227
LweI	GCATC	1 cut(s)	94
MaeII	ACGT	1 cut(s)	71
MaeIII	GTNAC	2 cut(s)	98, 160
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MflI	RGATCY	1 cut(s)	190
MluCI	AATT	4 cut(s)	18, 135, 223, 264
MnlI	CCTC	4 cut(s)	128, 204, 210, 273
MroXI	GAANNNNTTC	1 cut(s)	182
MseI	TTAA	3 cut(s)	222, 333, 355
MspI	CCGG	2 cut(s)	96, 319
MspR9I	CCNGG	3 cut(s)	45, 91, 327
Mva1269I	GAATGC	1 cut(s)	88
MvaI	CCWGG	3 cut(s)	45, 91, 327
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	2 cut(s)	83, 299
NdeII	GATC	1 cut(s)	190
PaeR7I	CTCGAG	1 cut(s)	201
PcsI	WCGNNNNNNNCGW	2 cut(s)	62, 68
PctI	GAATGC	1 cut(s)	88
PdmI	GAANNNNTTC	1 cut(s)	182
PfeI	GAWTC	1 cut(s)	322
PfoI	TCCNGGA	1 cut(s)	325
PinAI	ACCGGT	1 cut(s)	95
PkrI	GCNGC	2 cut(s)	88, 217
Psp6I	CCWGG	3 cut(s)	43, 89, 325
PspGI	CCWGG	3 cut(s)	43, 89, 325
PspPI	GGNCC	2 cut(s)	93, 154
PspXI	VCTCGAGB	1 cut(s)	201
PsuI	RGATCY	1 cut(s)	190
SalI	GTCGAC	1 cut(s)	58
SaqAI	TTAA	3 cut(s)	222, 333, 355
SatI	GCNGC	2 cut(s)	87, 216
Sau3AI	GATC	1 cut(s)	190
Sau96I	GGNCC	2 cut(s)	93, 154
ScrFI	CCNGG	3 cut(s)	45, 91, 327
SetI	ASST	6 cut(s)	49, 74, 120, 126, 135, 220
SfaNI	GCATC	1 cut(s)	94
Sfr274I	CTCGAG	1 cut(s)	201
SgrDI	CGTCGACG	1 cut(s)	58
SinI	GGWCC	2 cut(s)	93, 154
SlaI	CTCGAG	1 cut(s)	201
SmlI	CTYRAG	1 cut(s)	201
SmoI	CTYRAG	1 cut(s)	201
Sse9I	AATT	4 cut(s)	18, 135, 223, 264
SsiI	CCGC	2 cut(s)	30, 75
StyD4I	CCNGG	3 cut(s)	43, 89, 325
TaaI	ACNGT	2 cut(s)	149, 307
TaiI	ACGT	1 cut(s)	74
TaqI	TCGA	2 cut(s)	59, 202
TasI	AATT	4 cut(s)	18, 135, 223, 264
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	3 cut(s)	222, 333, 355
Tru9I	TTAA	3 cut(s)	222, 333, 355
TseI	GCWGC	2 cut(s)	86, 215
VpaK11BI	GGWCC	2 cut(s)	93, 154
XagI	CCTNNNNNAGG	1 cut(s)	128
XapI	RAATTY	1 cut(s)	264
XhoI	CTCGAG	1 cut(s)	201
XmiI	GTMKAC	1 cut(s)	59
XmnI	GAANNNNTTC	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.