Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008728.1

Orthogroup ID

OG0004228

Physical Location & Seq

Genomic Coordinates Forward (+)

90512 .. 90991

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008728.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ctggctgaccagaaaaaccgtttctggtacgtagtcactgccttctctggcaccctggtcgcggttacgtcttggatcggactaaggaaccagaggaggcttctgaaaatggagaatgaaaggttcactagggaatttaacttggagaagagagaaatctccaaggagaagagagatgtggaagcagagaaaagagaaatcgccaaggagaagaaagaggtcgaggtggcacaaagagaagtcaacaaggagaagagagggttcgaggcggcacagagagaagtcaacaaggagaagagagaggtcgaggcggcacagagagaagtcaacaaggagaagagagaggtcgaggcggcacagagagaagtcaacaaggagaagagagaggtaaaagagagtcgacaaggagaagagggagatggaaaagagccgctggttctggaagtagccccaaggctgagtggtaatatttcaacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

18.7

Weight (kDa)

9.24

Isoelectric Point (pI)

45.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004228)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00410
malus_domestica	MD04G1004400.v1.1 MD17G1181400.v1.1
prunus_persica	Prupe.1G004100_v2.0.a1
pyrus_communis	pycom04g00450
rosa_chinensis	RchiOBHm_Chr4g0385811
rosa_laevigata	RLG00000010206 RLG00000010212 RLG00000010227 RLG00000010229
rosa_multiflora	Rmu_co8457409.1_g000001 Rmu_sc0004773.1_g000002 Rmu_sc0008728.1_g000012 Rmu_sc0015537.1_g000002 Rmu_sc0029486.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333310
rosa_rugosa	Rorug03G0060400 Rorug03G0300500 Rorug03G0300900 Rorug04G0011200
rosa_samantha	Rh4AG004500 Rh4AG004800 Rh4AG005200 Rh4AG005600 Rh4BG004100 Rh4DG004300 Rh4DG004700 Rh4DG005900 Rh4DG006200 Rh4DG080400
rosa_wichuraiana	Rw4G000410 Rw4G000420 Rw4G000430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	50
AccI	GTMKAC	1 cut(s)	400
AccII	CGCG	1 cut(s)	62
AciI	CCGC	5 cut(s)	62, 269, 311, 353, 431
AclWI	GGATC	1 cut(s)	83
AcsI	RAATTY	1 cut(s)	134
AfaI	GTAC	1 cut(s)	29
AfiI	CCNNNNNNNGG	1 cut(s)	61
AgsI	TTSAA	1 cut(s)	474
AjnI	CCWGG	1 cut(s)	54
AlwI	GGATC	1 cut(s)	83
ApoI	RAATTY	1 cut(s)	134
BanI	GGYRCC	1 cut(s)	50
BccI	CCATC	1 cut(s)	413
BcgI	CGANNNNNNTGC	2 cut(s)	40, 74
BciT130I	CCWGG	1 cut(s)	56
BfaI	CTAG	1 cut(s)	129
BisI	GCNGC	4 cut(s)	270, 312, 354, 431
BlsI	GCNGC	4 cut(s)	271, 313, 355, 432
Bme1390I	CCNGG	1 cut(s)	56
BmiI	GGNNCC	2 cut(s)	52, 89
BmrFI	CCNGG	1 cut(s)	56
BsaAI	YACGTR	1 cut(s)	31
BsaJI	CCNNGG	4 cut(s)	54, 162, 204, 452
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
BseBI	CCWGG	1 cut(s)	56
BseDI	CCNNGG	4 cut(s)	54, 162, 204, 452
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMII	CTCAG	1 cut(s)	449
BseRI	GAGGAG	1 cut(s)	109
Bsh1236I	CGCG	1 cut(s)	62
BshNI	GGYRCC	1 cut(s)	50
BslI	CCNNNNNNNGG	1 cut(s)	61
Bsp143I	GATC	1 cut(s)	75
BspACI	CCGC	5 cut(s)	62, 269, 311, 353, 431
BspCNI	CTCAG	1 cut(s)	450
BspFNI	CGCG	1 cut(s)	62
BspLI	GGNNCC	2 cut(s)	52, 89
BspPI	GGATC	1 cut(s)	83
BspT107I	GGYRCC	1 cut(s)	50
BssECI	CCNNGG	4 cut(s)	54, 162, 204, 452
BssMI	GATC	1 cut(s)	75
BssT1I	CCWWGG	3 cut(s)	162, 204, 452
Bst2UI	CCWGG	1 cut(s)	56
Bst4CI	ACNGT	1 cut(s)	20
Bst6I	CTCTTC	7 cut(s)	143, 164, 248, 290, 332, 374, 405
BstBAI	YACGTR	1 cut(s)	31
BstDEI	CTNAG	2 cut(s)	83, 458
BstFNI	CGCG	1 cut(s)	62
BstKTI	GATC	1 cut(s)	78
BstMBI	GATC	1 cut(s)	75
BstNI	CCWGG	1 cut(s)	56
BstSCI	CCNGG	1 cut(s)	54
BstSNI	TACGTA	1 cut(s)	31
BstUI	CGCG	1 cut(s)	62
BtsI	GCAGTG	1 cut(s)	36
BtsIMutI	CAGTG	1 cut(s)	36
Csp6I	GTAC	1 cut(s)	28
CviJI	RGCY	5 cut(s)	5, 100, 430, 449, 457
CviKI_1	RGCY	5 cut(s)	5, 100, 430, 449, 457
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	2 cut(s)	83, 458
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
Eam1104I	CTCTTC	7 cut(s)	143, 164, 248, 290, 332, 374, 405
EarI	CTCTTC	7 cut(s)	143, 164, 248, 290, 332, 374, 405
Eco105I	TACGTA	1 cut(s)	31
Eco130I	CCWWGG	3 cut(s)	162, 204, 452
EcoRII	CCWGG	1 cut(s)	54
EcoT14I	CCWWGG	3 cut(s)	162, 204, 452
ErhI	CCWWGG	3 cut(s)	162, 204, 452
FblI	GTMKAC	1 cut(s)	400
Fnu4HI	GCNGC	4 cut(s)	270, 312, 354, 431
Fsp4HI	GCNGC	4 cut(s)	270, 312, 354, 431
FspBI	CTAG	1 cut(s)	129
GluI	GCNGC	4 cut(s)	270, 312, 354, 431
HincII	GTYRAC	5 cut(s)	244, 286, 328, 370, 401
HindII	GTYRAC	5 cut(s)	244, 286, 328, 370, 401
HinfI	GANTC	1 cut(s)	397
Hpy166II	GTNNAC	6 cut(s)	126, 244, 286, 328, 370, 401
Hpy188I	TCNGA	2 cut(s)	80, 105
Hpy188III	TCNNGA	1 cut(s)	440
Hpy8I	GTNNAC	6 cut(s)	126, 244, 286, 328, 370, 401
HpyAV	CCTTC	1 cut(s)	52
HpyCH4III	ACNGT	1 cut(s)	20
HpyCH4IV	ACGT	2 cut(s)	30, 68
HpyF3I	CTNAG	2 cut(s)	83, 458
HpySE526I	ACGT	2 cut(s)	30, 68
Kzo9I	GATC	1 cut(s)	75
LpnPI	CCDG	8 cut(s)	10, 23, 33, 41, 68, 104, 419, 425
MaeI	CTAG	1 cut(s)	129
MaeII	ACGT	2 cut(s)	30, 68
MaeIII	GTNAC	2 cut(s)	34, 64
MalI	GATC	1 cut(s)	77
MboI	GATC	1 cut(s)	75
MboII	GAAGA	8 cut(s)	160, 181, 223, 265, 307, 349, 391, 422
MluCI	AATT	1 cut(s)	134
MlyI	GAGTC	1 cut(s)	406
MseI	TTAA	1 cut(s)	138
MspA1I	CMGCKG	1 cut(s)	433
MspR9I	CCNGG	1 cut(s)	56
MvaI	CCWGG	1 cut(s)	56
MvnI	CGCG	1 cut(s)	62
NdeII	GATC	1 cut(s)	75
NlaIV	GGNNCC	2 cut(s)	52, 89
NmuCI	GTSAC	1 cut(s)	34
PkrI	GCNGC	4 cut(s)	271, 313, 355, 432
PleI	GAGTC	1 cut(s)	405
PpsI	GAGTC	1 cut(s)	405
Ppu21I	YACGTR	1 cut(s)	31
Psp6I	CCWGG	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	54
PspN4I	GGNNCC	2 cut(s)	52, 89
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
SalI	GTCGAC	1 cut(s)	399
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	4 cut(s)	270, 312, 354, 431
Sau3AI	GATC	1 cut(s)	75
SchI	GAGTC	1 cut(s)	406
ScrFI	CCNGG	1 cut(s)	56
SetI	ASST	9 cut(s)	33, 71, 125, 222, 228, 306, 348, 390, 479
SnaBI	TACGTA	1 cut(s)	31
Sse9I	AATT	1 cut(s)	134
SsiI	CCGC	5 cut(s)	62, 269, 311, 353, 431
SspI	AATATT	1 cut(s)	469
SspMI	CTAG	1 cut(s)	129
StyD4I	CCNGG	1 cut(s)	54
StyI	CCWWGG	3 cut(s)	162, 204, 452
TaaI	ACNGT	1 cut(s)	20
TaiI	ACGT	2 cut(s)	33, 71
TaqI	TCGA	5 cut(s)	222, 264, 306, 348, 400
TasI	AATT	1 cut(s)	134
TauI	GCSGC	4 cut(s)	272, 314, 356, 433
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	1 cut(s)	43
TseFI	GTSAC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	1 cut(s)	132
TspRI	CASTG	1 cut(s)	43
XapI	RAATTY	1 cut(s)	134
XmiI	GTMKAC	1 cut(s)	400
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.