Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029486.1

Orthogroup ID

OG0004228

Physical Location & Seq

Genomic Coordinates Forward (+)

67 .. 744

Gene Structure 678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029486.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

atgggtgttcgcttaccaaaagggttccgtccggttgtttgtgaagctttacttcctatccttgaacatatacactcggcaatattacaagcgttgagttcccccaatgcagatattcaggttacagcatttggtgctgtggtcagtttgataggtttgtttacgagttcaaaggggcggaactggtttaatgaccttttgagagcaatgatgttgggactgtttaacttgttgagtcacttgaaagaagaatatgctcgtggggctgtcaatgagttaataatgctggtcatggatgagccacaaatcttgaagccttaccttaaccatctagtactcgacatgcttaatgtgctagagtgtaaaaaagtgacagatgaaacgaaactgtttgttgacaagttcttgctcgcaatggcagaagccacggatttggcacctatgatgagagagctacctcatgaaacaatgtttaggctgctcacgacctcaatgcaactgcttctctctataaaggatgacaatgcatggtacaacactgaaagcgagcagggtgagaatgatggaaagatggatgtatacaaatctgggattttgttcctatatgttttgaattgttcttggggcacatggaggctaccgagtggaagaaacgttatgcggggatttctttgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

225

Amino Acids

25.47

Weight (kDa)

5.75

Isoelectric Point (pI)

28.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004228)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00410
malus_domestica	MD04G1004400.v1.1 MD17G1181400.v1.1
prunus_persica	Prupe.1G004100_v2.0.a1
pyrus_communis	pycom04g00450
rosa_chinensis	RchiOBHm_Chr4g0385811
rosa_laevigata	RLG00000010206 RLG00000010212 RLG00000010227 RLG00000010229
rosa_multiflora	Rmu_co8457409.1_g000001 Rmu_sc0004773.1_g000002 Rmu_sc0008728.1_g000012 Rmu_sc0015537.1_g000002 Rmu_sc0029486.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333310
rosa_rugosa	Rorug03G0060400 Rorug03G0300500 Rorug03G0300900 Rorug04G0011200
rosa_samantha	Rh4AG004500 Rh4AG004800 Rh4AG005200 Rh4AG005600 Rh4BG004100 Rh4DG004300 Rh4DG004700 Rh4DG005900 Rh4DG006200 Rh4DG080400
rosa_wichuraiana	Rw4G000410 Rw4G000420 Rw4G000430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	436
AccI	GTMKAC	1 cut(s)	579
AciI	CCGC	2 cut(s)	178, 661
AclI	AACGTT	1 cut(s)	654
AfaI	GTAC	2 cut(s)	336, 533
AgsI	TTSAA	5 cut(s)	65, 171, 244, 313, 613
AluBI	AGCT	2 cut(s)	47, 454
AluI	AGCT	2 cut(s)	47, 454
ApeKI	GCWGC	1 cut(s)	478
AsuHPI	GGTGA	1 cut(s)	566
BaeGI	GKGCMC	1 cut(s)	629
BanI	GGYRCC	1 cut(s)	436
BauI	CACGAG	1 cut(s)	258
BbvI	GCAGC	1 cut(s)	465
BccI	CCATC	3 cut(s)	336, 557, 565
BcgI	CGANNNNNNTGC	2 cut(s)	475, 509
BfaI	CTAG	3 cut(s)	332, 356, 676
BisI	GCNGC	1 cut(s)	479
BlsI	GCNGC	1 cut(s)	480
BmcAI	AGTACT	1 cut(s)	336
BmiI	GGNNCC	2 cut(s)	26, 438
BsaJI	CCNNGG	1 cut(s)	426
BsaWI	WCCGGW	1 cut(s)	31
Bse1I	ACTGG	1 cut(s)	188
Bse3DI	GCAATG	2 cut(s)	213, 420
BseDI	CCNNGG	1 cut(s)	426
BseGI	GGATG	3 cut(s)	301, 523, 580
BseMI	GCAATG	2 cut(s)	213, 420
BseNI	ACTGG	1 cut(s)	188
BseSI	GKGCMC	1 cut(s)	629
BseXI	GCAGC	1 cut(s)	465
BshNI	GGYRCC	1 cut(s)	436
BsiSI	CCGG	1 cut(s)	32
BslFI	GGGAC	1 cut(s)	231
BsmFI	GGGAC	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	629
BspACI	CCGC	2 cut(s)	178, 661
BspHI	TCATGA	1 cut(s)	460
BspLI	GGNNCC	2 cut(s)	26, 438
BspT107I	GGYRCC	1 cut(s)	436
BsrDI	GCAATG	2 cut(s)	213, 420
BsrI	ACTGG	1 cut(s)	188
BssECI	CCNNGG	1 cut(s)	426
BssNAI	GTATAC	1 cut(s)	580
BssSI	CACGAG	1 cut(s)	258
Bst1107I	GTATAC	1 cut(s)	580
Bst2BI	CACGAG	1 cut(s)	258
Bst4CI	ACNGT	2 cut(s)	222, 390
BstAPI	GCANNNNNTGC	1 cut(s)	134
BstC8I	GCNNGC	2 cut(s)	411, 548
BstDSI	CCRYGG	1 cut(s)	426
BstF5I	GGATG	3 cut(s)	301, 523, 580
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 263, 352
BstNSI	RCATGY	1 cut(s)	346
BstSLI	GKGCMC	1 cut(s)	629
BstV1I	GCAGC	1 cut(s)	465
BstXI	CCANNNNNNTGG	1 cut(s)	433
BstZ17I	GTATAC	1 cut(s)	580
BtgI	CCRYGG	1 cut(s)	426
BtsCI	GGATG	3 cut(s)	301, 523, 580
BtsIMutI	CAGTG	1 cut(s)	537
Cac8I	GCNNGC	2 cut(s)	411, 548
CciI	TCATGA	1 cut(s)	460
Csp6I	GTAC	2 cut(s)	335, 532
CspCI	CAANNNNNGTGG	2 cut(s)	291, 326
CviAII	CATG	5 cut(s)	292, 343, 461, 528, 630
CviJI	RGCY	8 cut(s)	47, 266, 301, 316, 425, 454, 478, 637
CviKI_1	RGCY	8 cut(s)	47, 266, 301, 316, 425, 454, 478, 637
CviQI	GTAC	2 cut(s)	335, 532
EciI	GGCGGA	1 cut(s)	193
EcoT22I	ATGCAT	1 cut(s)	529
FaeI	CATG	5 cut(s)	295, 346, 464, 531, 633
FalI	AAGNNNNNCTT	2 cut(s)	36, 68
FaqI	GGGAC	1 cut(s)	231
FatI	CATG	5 cut(s)	291, 342, 460, 527, 629
FauI	CCCGC	1 cut(s)	654
FblI	GTMKAC	1 cut(s)	579
Fnu4HI	GCNGC	1 cut(s)	479
FokI	GGATG	3 cut(s)	308, 530, 587
Fsp4HI	GCNGC	1 cut(s)	479
FspBI	CTAG	3 cut(s)	332, 356, 676
GluI	GCNGC	1 cut(s)	479
HapII	CCGG	1 cut(s)	32
Hin1II	CATG	5 cut(s)	295, 346, 464, 531, 633
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HindIII	AAGCTT	1 cut(s)	45
HinfI	GANTC	1 cut(s)	235
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	1 cut(s)	566
Hpy166II	GTNNAC	3 cut(s)	162, 397, 580
Hpy188III	TCNNGA	3 cut(s)	310, 461, 484
Hpy8I	GTNNAC	3 cut(s)	162, 397, 580
HpyCH4III	ACNGT	2 cut(s)	222, 390
HpyCH4IV	ACGT	1 cut(s)	654
HpyCH4V	TGCA	3 cut(s)	110, 496, 527
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 263, 352
HpySE526I	ACGT	1 cut(s)	654
Hsp92II	CATG	5 cut(s)	295, 346, 464, 531, 633
LpnPI	CCDG	6 cut(s)	45, 104, 169, 272, 536, 573
Lsp1109I	GCAGC	1 cut(s)	465
MaeI	CTAG	3 cut(s)	332, 356, 676
MaeII	ACGT	1 cut(s)	654
MaeIII	GTNAC	3 cut(s)	121, 236, 370
MboII	GAAGA	2 cut(s)	260, 660
MhlI	GDGCHC	1 cut(s)	629
MluCI	AATT	1 cut(s)	613
MlyI	GAGTC	1 cut(s)	244
MnlI	CCTC	3 cut(s)	468, 499, 627
Mph1103I	ATGCAT	1 cut(s)	529
MseI	TTAA	5 cut(s)	189, 225, 278, 324, 348
MspI	CCGG	1 cut(s)	32
MwoI	GCNNNNNNNGC	3 cut(s)	134, 263, 352
NlaIII	CATG	5 cut(s)	295, 346, 464, 531, 633
NlaIV	GGNNCC	2 cut(s)	26, 438
NmeAIII	GCCGAG	1 cut(s)	56
NmuCI	GTSAC	2 cut(s)	236, 370
NsiI	ATGCAT	1 cut(s)	529
NspI	RCATGY	1 cut(s)	346
PagI	TCATGA	1 cut(s)	460
PkrI	GCNGC	1 cut(s)	480
PleI	GAGTC	1 cut(s)	243
PpsI	GAGTC	1 cut(s)	243
Psp1406I	AACGTT	1 cut(s)	654
PspN4I	GGNNCC	2 cut(s)	26, 438
RsaI	GTAC	2 cut(s)	336, 533
RsaNI	GTAC	2 cut(s)	335, 532
SaqAI	TTAA	5 cut(s)	189, 225, 278, 324, 348
SatI	GCNGC	1 cut(s)	479
ScaI	AGTACT	1 cut(s)	336
SchI	GAGTC	1 cut(s)	244
SduI	GDGCHC	1 cut(s)	629
Sse9I	AATT	1 cut(s)	613
SsiI	CCGC	2 cut(s)	178, 661
SspI	AATATT	1 cut(s)	84
SspMI	CTAG	3 cut(s)	332, 356, 676
TaaI	ACNGT	2 cut(s)	222, 390
TaiI	ACGT	1 cut(s)	657
TaqI	TCGA	1 cut(s)	339
TasI	AATT	1 cut(s)	613
TatI	WGTACW	1 cut(s)	334
Tru1I	TTAA	5 cut(s)	189, 225, 278, 324, 348
Tru9I	TTAA	5 cut(s)	189, 225, 278, 324, 348
TscAI	CASTG	1 cut(s)	544
TseFI	GTSAC	2 cut(s)	236, 370
TseI	GCWGC	1 cut(s)	478
Tsp45I	GTSAC	2 cut(s)	236, 370
TspDTI	ATGAA	2 cut(s)	393, 477
TspGWI	ACGGA	2 cut(s)	17, 443
TspRI	CASTG	1 cut(s)	544
XceI	RCATGY	1 cut(s)	346
XmiI	GTMKAC	1 cut(s)	579
XspI	CTAG	3 cut(s)	332, 356, 676
ZrmI	AGTACT	1 cut(s)	336
Zsp2I	ATGCAT	1 cut(s)	529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.