Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015537.1

Orthogroup ID

OG0004228

Physical Location & Seq

Genomic Coordinates Forward (+)

1667 .. 2689

Gene Structure 1023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015537.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

atgatggagtcggagtttcctcaggaattgcaaacacaagcctacggaattctgagctccaacgatgttgagccattggaggcactcttttctcacgtgtttggctcccaagaaccccaaaggtcccaagcttacacctttttacattattgcaaaaagcacttcccacatttgctcttcataaaactcttttttgttattagatgtagccctgtctctgacactaggtccaggtctgcccttgtgcttcgttatctcaaaatctgtgacctttggcctaccttgtcagtaattgctcaaaattacatgaaatcccacttccttgtttgtcttcaagaggaagtttcaatgcccactttgagactactttgtggcattgtgtctgaaatgggctctgagatttccaaggctggcaatgagtggccagagctcatggagtttttgttgaattctattcaatcggattatgagaagttacaacaatctgcattatgggtgttggcttatttgccaaaagggttccgtccggttgtttgtgaagctttacttcctagccttgaacctatacactcggcaatattacaagcgttgagttctcccaatgctgacattcaggttgctgcatttggtgctgtggtcagtttgataggtttgtttatgagttcaaaggggcggaactggtttaatgaccttttgagagcaatgatggtgggactgtttaacttgttgagtcacttgaaagaagaatatgctcgtggggctgtcaatgagttaataatgctggtcatggatgagcctcagatgttgaagccataccttaaccatctagtacttgacatgcttaatgtgctagagtgtaaaaaagtgacagatgaaacgaaactgtttgttgacaagttcttgctcgcaatggcagaagccacggatttggcacctaaaggtccattattaatttacaagagctacctcatgaaacaatggttaggctgctcacgacctcaatgcaactgcttctctctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

340

Amino Acids

38.63

Weight (kDa)

5.93

Isoelectric Point (pI)

49.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004228)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00410
malus_domestica	MD04G1004400.v1.1 MD17G1181400.v1.1
prunus_persica	Prupe.1G004100_v2.0.a1
pyrus_communis	pycom04g00450
rosa_chinensis	RchiOBHm_Chr4g0385811
rosa_laevigata	RLG00000010206 RLG00000010212 RLG00000010227 RLG00000010229
rosa_multiflora	Rmu_co8457409.1_g000001 Rmu_sc0004773.1_g000002 Rmu_sc0008728.1_g000012 Rmu_sc0015537.1_g000002 Rmu_sc0029486.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333310
rosa_rugosa	Rorug03G0060400 Rorug03G0300500 Rorug03G0300900 Rorug04G0011200
rosa_samantha	Rh4AG004500 Rh4AG004800 Rh4AG005200 Rh4AG005600 Rh4BG004100 Rh4DG004300 Rh4DG004700 Rh4DG005900 Rh4DG006200 Rh4DG080400
rosa_wichuraiana	Rw4G000410 Rw4G000420 Rw4G000430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	931
AciI	CCGC	1 cut(s)	673
AcoI	YGGCCR	1 cut(s)	422
AcsI	RAATTY	2 cut(s)	48, 448
AcvI	CACGTG	1 cut(s)	97
AfaI	GTAC	1 cut(s)	831
AflIII	ACRYGT	1 cut(s)	96
AgsI	TTSAA	8 cut(s)	335, 348, 448, 458, 560, 666, 739, 808
AhdI	GACNNNNNGTC	1 cut(s)	226
AjnI	CCWGG	1 cut(s)	230
AluBI	AGCT	5 cut(s)	57, 131, 430, 542, 963
AluI	AGCT	5 cut(s)	57, 131, 430, 542, 963
Alw21I	GWGCWC	2 cut(s)	59, 432
Alw26I	GTCTC	2 cut(s)	220, 355
AoxI	GGCC	2 cut(s)	275, 422
ApeKI	GCWGC	2 cut(s)	620, 987
ApoI	RAATTY	2 cut(s)	48, 448
AseI	ATTAAT	1 cut(s)	950
AspS9I	GGNCC	3 cut(s)	123, 228, 941
AvaII	GGWCC	3 cut(s)	123, 228, 941
AxyI	CCTNAGG	1 cut(s)	21
BalI	TGGCCA	1 cut(s)	424
BanI	GGYRCC	1 cut(s)	931
BanII	GRGCYC	3 cut(s)	59, 395, 432
BauI	CACGAG	1 cut(s)	753
BbrPI	CACGTG	1 cut(s)	97
BbsI	GAAGAC	1 cut(s)	323
Bbv12I	GWGCWC	2 cut(s)	59, 432
BbvI	GCAGC	2 cut(s)	607, 974
BccI	CCATC	2 cut(s)	700, 831
BcgI	CGANNNNNNTGC	2 cut(s)	984, 1018
BciT130I	CCWGG	1 cut(s)	232
BcoDI	GTCTC	2 cut(s)	220, 355
BfaI	CTAG	4 cut(s)	225, 552, 827, 851
BisI	GCNGC	2 cut(s)	621, 988
BlsI	GCNGC	2 cut(s)	622, 989
BmcAI	AGTACT	1 cut(s)	831
Bme1390I	CCNGG	1 cut(s)	232
Bme18I	GGWCC	3 cut(s)	123, 228, 941
BmeRI	GACNNNNNGTC	1 cut(s)	226
BmgT120I	GGNCC	3 cut(s)	123, 228, 941
BmiI	GGNNCC	4 cut(s)	106, 125, 521, 933
BmrFI	CCNGG	1 cut(s)	232
BpiI	GAAGAC	1 cut(s)	323
BsaAI	YACGTR	1 cut(s)	97
BsaJI	CCNNGG	2 cut(s)	405, 921
BsaWI	WCCGGW	1 cut(s)	526
BsaXI	ACNNNNNCTCC	3 cut(s)	29, 428, 458
Bse1I	ACTGG	1 cut(s)	683
Bse21I	CCTNAGG	1 cut(s)	21
Bse3DI	GCAATG	3 cut(s)	421, 708, 915
BseBI	CCWGG	1 cut(s)	232
BseDI	CCNNGG	2 cut(s)	405, 921
BseGI	GGATG	1 cut(s)	796
BseMI	GCAATG	3 cut(s)	421, 708, 915
BseMII	CTCAG	4 cut(s)	35, 44, 387, 812
BseNI	ACTGG	1 cut(s)	683
BseXI	GCAGC	2 cut(s)	607, 974
BshFI	GGCC	2 cut(s)	277, 424
BshNI	GGYRCC	1 cut(s)	931
BsiHKAI	GWGCWC	2 cut(s)	59, 432
BsiSI	CCGG	1 cut(s)	527
BslFI	GGGAC	2 cut(s)	109, 726
BsmAI	GTCTC	2 cut(s)	220, 355
BsmFI	GGGAC	2 cut(s)	109, 726
BsnI	GGCC	2 cut(s)	277, 424
Bsp1286I	GDGCHC	3 cut(s)	59, 395, 432
BspACI	CCGC	1 cut(s)	673
BspANI	GGCC	2 cut(s)	277, 424
BspCNI	CTCAG	4 cut(s)	34, 45, 388, 811
BspHI	TCATGA	1 cut(s)	969
BspLI	GGNNCC	4 cut(s)	106, 125, 521, 933
BspQI	GCTCTTC	1 cut(s)	182
BspT107I	GGYRCC	1 cut(s)	931
BsrDI	GCAATG	3 cut(s)	421, 708, 915
BsrI	ACTGG	1 cut(s)	683
BssECI	CCNNGG	2 cut(s)	405, 921
BssSI	CACGAG	1 cut(s)	753
BssT1I	CCWWGG	1 cut(s)	405
Bst2BI	CACGAG	1 cut(s)	753
Bst2UI	CCWGG	1 cut(s)	232
Bst4CI	ACNGT	2 cut(s)	717, 885
Bst6I	CTCTTC	1 cut(s)	182
BstAPI	GCANNNNNTGC	1 cut(s)	629
BstBAI	YACGTR	1 cut(s)	97
BstC8I	GCNNGC	2 cut(s)	412, 906
BstDEI	CTNAG	4 cut(s)	21, 53, 396, 798
BstDSI	CCRYGG	1 cut(s)	921
BstF5I	GGATG	1 cut(s)	796
BstMAI	GTCTC	2 cut(s)	220, 355
BstMWI	GCNNNNNNNGC	3 cut(s)	629, 758, 847
BstNI	CCWGG	1 cut(s)	232
BstNSI	RCATGY	1 cut(s)	841
BstSCI	CCNGG	1 cut(s)	230
BstV1I	GCAGC	2 cut(s)	607, 974
BstV2I	GAAGAC	1 cut(s)	323
BstXI	CCANNNNNNTGG	1 cut(s)	928
Bsu36I	CCTNAGG	1 cut(s)	21
BsuRI	GGCC	2 cut(s)	277, 424
BtgI	CCRYGG	1 cut(s)	921
BtsCI	GGATG	1 cut(s)	796
Cac8I	GCNNGC	2 cut(s)	412, 906
CciI	TCATGA	1 cut(s)	969
Cfr13I	GGNCC	3 cut(s)	123, 228, 941
Csp6I	GTAC	1 cut(s)	830
CspCI	CAANNNNNGTGG	2 cut(s)	690, 725
CviAII	CATG	5 cut(s)	307, 433, 787, 838, 970
CviQI	GTAC	1 cut(s)	830
DdeI	CTNAG	4 cut(s)	21, 53, 396, 798
DriI	GACNNNNNGTC	1 cut(s)	226
EaeI	YGGCCR	1 cut(s)	422
Eam1104I	CTCTTC	1 cut(s)	182
Eam1105I	GACNNNNNGTC	1 cut(s)	226
EarI	CTCTTC	1 cut(s)	182
EciI	GGCGGA	1 cut(s)	688
Ecl136II	GAGCTC	2 cut(s)	57, 430
Eco130I	CCWWGG	1 cut(s)	405
Eco24I	GRGCYC	3 cut(s)	59, 395, 432
Eco47I	GGWCC	3 cut(s)	123, 228, 941
Eco53kI	GAGCTC	2 cut(s)	57, 430
Eco72I	CACGTG	1 cut(s)	97
Eco81I	CCTNAGG	1 cut(s)	21
EcoICRI	GAGCTC	2 cut(s)	57, 430
EcoO109I	RGGNCCY	1 cut(s)	123
EcoRI	GAATTC	2 cut(s)	48, 448
EcoRII	CCWGG	1 cut(s)	230
EcoT14I	CCWWGG	1 cut(s)	405
EcoT38I	GRGCYC	3 cut(s)	59, 395, 432
ErhI	CCWWGG	1 cut(s)	405
FaeI	CATG	5 cut(s)	310, 436, 790, 841, 973
FalI	AAGNNNNNCTT	2 cut(s)	531, 563
FaqI	GGGAC	2 cut(s)	109, 726
FatI	CATG	5 cut(s)	306, 432, 786, 837, 969
Fnu4HI	GCNGC	2 cut(s)	621, 988
FokI	GGATG	1 cut(s)	803
FriOI	GRGCYC	3 cut(s)	59, 395, 432
Fsp4HI	GCNGC	2 cut(s)	621, 988
FspBI	CTAG	4 cut(s)	225, 552, 827, 851
GluI	GCNGC	2 cut(s)	621, 988
HaeIII	GGCC	2 cut(s)	277, 424
HapII	CCGG	1 cut(s)	527
Hin1II	CATG	5 cut(s)	310, 436, 790, 841, 973
HincII	GTYRAC	1 cut(s)	892
HindII	GTYRAC	1 cut(s)	892
HindIII	AAGCTT	2 cut(s)	129, 540
HinfI	GANTC	2 cut(s)	8, 730
HpaII	CCGG	1 cut(s)	527
Hpy166II	GTNNAC	1 cut(s)	892
Hpy188I	TCNGA	7 cut(s)	13, 54, 220, 385, 397, 463, 801
Hpy188III	TCNNGA	4 cut(s)	23, 335, 970, 993
Hpy8I	GTNNAC	1 cut(s)	892
HpyCH4III	ACNGT	2 cut(s)	717, 885
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	5 cut(s)	31, 153, 488, 623, 1005
HpyF10VI	GCNNNNNNNGC	3 cut(s)	629, 758, 847
HpyF3I	CTNAG	4 cut(s)	21, 53, 396, 798
HpySE526I	ACGT	1 cut(s)	96
Hsp92II	CATG	5 cut(s)	310, 436, 790, 841, 973
LguI	GCTCTTC	1 cut(s)	182
LmnI	GCTCC	2 cut(s)	62, 110
Lsp1109I	GCAGC	2 cut(s)	607, 974
MaeI	CTAG	4 cut(s)	225, 552, 827, 851
MaeII	ACGT	1 cut(s)	96
MaeIII	GTNAC	4 cut(s)	266, 474, 731, 865
MboII	GAAGA	3 cut(s)	169, 323, 755
MhlI	GDGCHC	3 cut(s)	59, 395, 432
MlsI	TGGCCA	1 cut(s)	424
MluCI	AATT	6 cut(s)	26, 48, 291, 301, 448, 951
MluNI	TGGCCA	1 cut(s)	424
MlyI	GAGTC	2 cut(s)	17, 739
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	6 cut(s)	30, 73, 331, 807, 977, 1008
Mox20I	TGGCCA	1 cut(s)	424
MscI	TGGCCA	1 cut(s)	424
MseI	TTAA	6 cut(s)	684, 720, 773, 819, 843, 950
Msp20I	TGGCCA	1 cut(s)	424
MspI	CCGG	1 cut(s)	527
MspR9I	CCNGG	1 cut(s)	232
MvaI	CCWGG	1 cut(s)	232
MwoI	GCNNNNNNNGC	3 cut(s)	629, 758, 847
NlaIII	CATG	5 cut(s)	310, 436, 790, 841, 973
NlaIV	GGNNCC	4 cut(s)	106, 125, 521, 933
NmeAIII	GCCGAG	1 cut(s)	551
NmuCI	GTSAC	3 cut(s)	266, 731, 865
NspI	RCATGY	1 cut(s)	841
PagI	TCATGA	1 cut(s)	969
PciSI	GCTCTTC	1 cut(s)	182
PkrI	GCNGC	2 cut(s)	622, 989
PleI	GAGTC	2 cut(s)	16, 738
PmaCI	CACGTG	1 cut(s)	97
PmlI	CACGTG	1 cut(s)	97
PpsI	GAGTC	2 cut(s)	16, 738
Ppu21I	YACGTR	1 cut(s)	97
PpuMI	RGGWCCY	1 cut(s)	123
PshBI	ATTAAT	1 cut(s)	950
Psp124BI	GAGCTC	2 cut(s)	59, 432
Psp5II	RGGWCCY	1 cut(s)	123
Psp6I	CCWGG	1 cut(s)	230
PspCI	CACGTG	1 cut(s)	97
PspGI	CCWGG	1 cut(s)	230
PspN4I	GGNNCC	4 cut(s)	106, 125, 521, 933
PspPI	GGNCC	3 cut(s)	123, 228, 941
PspPPI	RGGWCCY	1 cut(s)	123
RsaI	GTAC	1 cut(s)	831
RsaNI	GTAC	1 cut(s)	830
SacI	GAGCTC	2 cut(s)	59, 432
SapI	GCTCTTC	1 cut(s)	182
SaqAI	TTAA	6 cut(s)	684, 720, 773, 819, 843, 950
SatI	GCNGC	2 cut(s)	621, 988
Sau96I	GGNCC	3 cut(s)	123, 228, 941
ScaI	AGTACT	1 cut(s)	831
SchI	GAGTC	2 cut(s)	17, 739
ScrFI	CCNGG	1 cut(s)	232
SduI	GDGCHC	3 cut(s)	59, 395, 432
SinI	GGWCC	3 cut(s)	123, 228, 941
Sse9I	AATT	6 cut(s)	26, 48, 291, 301, 448, 951
SsiI	CCGC	1 cut(s)	673
SspI	AATATT	1 cut(s)	579
SspMI	CTAG	4 cut(s)	225, 552, 827, 851
SstI	GAGCTC	2 cut(s)	59, 432
StyD4I	CCNGG	1 cut(s)	230
StyI	CCWWGG	1 cut(s)	405
TaaI	ACNGT	2 cut(s)	717, 885
TaiI	ACGT	1 cut(s)	99
TasI	AATT	6 cut(s)	26, 48, 291, 301, 448, 951
TatI	WGTACW	1 cut(s)	829
Tru1I	TTAA	6 cut(s)	684, 720, 773, 819, 843, 950
Tru9I	TTAA	6 cut(s)	684, 720, 773, 819, 843, 950
TseFI	GTSAC	3 cut(s)	266, 731, 865
TseI	GCWGC	2 cut(s)	620, 987
Tsp45I	GTSAC	3 cut(s)	266, 731, 865
TspDTI	ATGAA	4 cut(s)	169, 323, 888, 986
TspGWI	ACGGA	3 cut(s)	60, 512, 938
VpaK11BI	GGWCC	3 cut(s)	123, 228, 941
VspI	ATTAAT	1 cut(s)	950
XapI	RAATTY	2 cut(s)	48, 448
XceI	RCATGY	1 cut(s)	841
XspI	CTAG	4 cut(s)	225, 552, 827, 851
ZrmI	AGTACT	1 cut(s)	831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.