RLG00000010212

ribosomal protein import into nucleus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0004228
Physical Location & Seq
Forward (+)
64263741 .. 64266337
2597 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010212

Sequence Viewer

Length: 852 bp
ATGATGGAGTCGGAGTTTCCTCAGGAATTGCAAACAAAAGCCTACGGAATTCTGAGCTCCAACGATGTTGGGCCATTGGAGACACTCTTTTCTCACGTGTTTGGCTCCCAAGAACCCCAAAGATGTAGCCATGTCTCTGACAATAGGTCCAGGTCTGCGCTTGTGCTTCGACAGCTTCGTTATCTCAAAATATGTGACCTTTGGCCCAAGTTGTCTCTAATTGCTCAAAATTACATGAAATCCCACTTCCTTGTTTGTCTTCAAGAGGAAGTTTCAATGACCACTTTGGGACTACTTTGTGGCATTGTGTCTGAAATGGGCTCTGAGATTTCCAAGGCTGGCAATGAATGGCCAGAGCTCATGGAGTTTTTGTTGAATTCTATTCAATTGGATTACGAAAAGTTACAACAATGTGCATTGTGGGTGTTGGCTTATTTGCCAAAAGGGTTCCGTCCGGTTGTTTGTGAAGCTTTAGTTCCTAGCCTTGAACCTTTACACTCGGCAATGTTACAAGCCTTGAGTTCCCCCAATGCTGATATTCAAGTTACTGCATTTGGTGCTGTGGTTAGTTTGATAGTCACTGCCTTCTCGGGGACCTTGGTCGCGGTTATGTCTTGGATCGGACTAAGGAACCAGAGGAGGCTTCTGAAAATGGAGAATGAAAGGTTCACTAGGGAAGTTAACTTGGAGAAGAGAGATGTGGAAGCAGAGAAAAGAGAAATCGCCAAGGAGAAGAGAGAGGTCGAGGCGGCACAGAGAGAAGTCAACAAGGAGAAAAGAGAGTCGACAAGGAGAAGAGGGAGATGGAAAAGAGCCGCTGGTTCTGGAAGTAGCCCCAAGGCTGAGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

284

Amino Acids

32.12

Weight (kDa)

8.18

Isoelectric Point (pI)

57.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_IPO5 PF25780 99 - 195 5.3e-09 IPO5-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 785
AccII CGCG 1 cut(s) 605
AciI CCGC 3 cut(s) 605, 749, 816
AclWI GGATC 1 cut(s) 626
AcoI YGGCCR 1 cut(s) 350
AcsI RAATTY 2 cut(s) 48, 376
AcvI CACGTG 1 cut(s) 97
AfiI CCNNNNNNNGG 1 cut(s) 591
AflIII ACRYGT 1 cut(s) 96
AgsI TTSAA 6 cut(s) 263, 276, 376, 386, 488, 542
AhdI GACNNNNNGTC 1 cut(s) 145
AjnI CCWGG 1 cut(s) 149
AluBI AGCT 4 cut(s) 57, 175, 358, 470
AluI AGCT 4 cut(s) 57, 175, 358, 470
Alw21I GWGCWC 2 cut(s) 59, 360
Alw26I GTCTC 3 cut(s) 74, 139, 219
AlwI GGATC 1 cut(s) 626
Ama87I CYCGRG 1 cut(s) 589
AoxI GGCC 3 cut(s) 71, 203, 350
ApoI RAATTY 2 cut(s) 48, 376
AspLEI GCGC 1 cut(s) 160
AspS9I GGNCC 4 cut(s) 71, 147, 204, 594
AvaI CYCGRG 1 cut(s) 589
AvaII GGWCC 2 cut(s) 147, 594
AxyI CCTNAGG 1 cut(s) 21
BalI TGGCCA 1 cut(s) 352
BanII GRGCYC 3 cut(s) 59, 323, 360
BbrPI CACGTG 1 cut(s) 97
BbsI GAAGAC 1 cut(s) 251
Bbv12I GWGCWC 2 cut(s) 59, 360
BccI CCATC 1 cut(s) 798
BciT130I CCWGG 1 cut(s) 151
BcoDI GTCTC 3 cut(s) 74, 139, 219
BfaI CTAG 2 cut(s) 480, 672
BisI GCNGC 2 cut(s) 750, 816
BlsI GCNGC 2 cut(s) 751, 817
Bme1390I CCNGG 1 cut(s) 151
Bme18I GGWCC 2 cut(s) 147, 594
BmeRI GACNNNNNGTC 1 cut(s) 145
BmeT110I CYCGRG 1 cut(s) 589
BmgT120I GGNCC 4 cut(s) 71, 147, 204, 594
BmiI GGNNCC 4 cut(s) 106, 449, 595, 632
BmrFI CCNGG 1 cut(s) 151
BoxI GACNNNNGTC 1 cut(s) 599
BpiI GAAGAC 1 cut(s) 251
BpuEI CTTGAG 1 cut(s) 538
BsaAI YACGTR 1 cut(s) 97
BsaJI CCNNGG 4 cut(s) 333, 597, 726, 837
BsaWI WCCGGW 1 cut(s) 454
BsaXI ACNNNNNCTCC 3 cut(s) 29, 356, 386
Bsc4I CCNNNNNNNGG 1 cut(s) 591
Bse21I CCTNAGG 1 cut(s) 21
Bse3DI GCAATG 2 cut(s) 349, 510
BseBI CCWGG 1 cut(s) 151
BseDI CCNNGG 4 cut(s) 333, 597, 726, 837
BseLI CCNNNNNNNGG 1 cut(s) 591
BseMI GCAATG 2 cut(s) 349, 510
BseMII CTCAG 4 cut(s) 35, 44, 315, 834
BseRI GAGGAG 1 cut(s) 652
Bsh1236I CGCG 1 cut(s) 605
BshFI GGCC 3 cut(s) 73, 205, 352
BsiHKAI GWGCWC 2 cut(s) 59, 360
BsiHKCI CYCGRG 1 cut(s) 589
BsiSI CCGG 1 cut(s) 455
BslFI GGGAC 2 cut(s) 303, 607
BslI CCNNNNNNNGG 1 cut(s) 591
BsmAI GTCTC 3 cut(s) 74, 139, 219
BsmFI GGGAC 2 cut(s) 303, 607
BsnI GGCC 3 cut(s) 73, 205, 352
BsoBI CYCGRG 1 cut(s) 589
Bsp1286I GDGCHC 3 cut(s) 59, 323, 360
Bsp143I GATC 1 cut(s) 618
BspACI CCGC 3 cut(s) 605, 749, 816
BspANI GGCC 3 cut(s) 73, 205, 352
BspCNI CTCAG 4 cut(s) 34, 45, 316, 835
BspFNI CGCG 1 cut(s) 605
BspLI GGNNCC 4 cut(s) 106, 449, 595, 632
BspPI GGATC 1 cut(s) 626
BsrDI GCAATG 2 cut(s) 349, 510
BssECI CCNNGG 4 cut(s) 333, 597, 726, 837
BssMI GATC 1 cut(s) 618
BssT1I CCWWGG 4 cut(s) 333, 597, 726, 837
Bst2UI CCWGG 1 cut(s) 151
Bst6I CTCTTC 3 cut(s) 686, 728, 790
BstAPI GCANNNNNTGC 1 cut(s) 557
BstBAI YACGTR 1 cut(s) 97
BstC8I GCNNGC 1 cut(s) 340
BstDEI CTNAG 5 cut(s) 21, 53, 324, 626, 843
BstFNI CGCG 1 cut(s) 605
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 1 cut(s) 621
BstMAI GTCTC 3 cut(s) 74, 139, 219
BstMBI GATC 1 cut(s) 618
BstMWI GCNNNNNNNGC 2 cut(s) 172, 557
BstNI CCWGG 1 cut(s) 151
BstPAI GACNNNNGTC 1 cut(s) 599
BstSCI CCNGG 1 cut(s) 149
BstUI CGCG 1 cut(s) 605
BstV2I GAAGAC 1 cut(s) 251
Bsu36I CCTNAGG 1 cut(s) 21
BsuRI GGCC 3 cut(s) 73, 205, 352
BtsI GCAGTG 1 cut(s) 579
BtsIMutI CAGTG 1 cut(s) 579
Cac8I GCNNGC 1 cut(s) 340
CfoI GCGC 1 cut(s) 160
Cfr13I GGNCC 4 cut(s) 71, 147, 204, 594
CviAII CATG 3 cut(s) 131, 235, 361
DdeI CTNAG 5 cut(s) 21, 53, 324, 626, 843
DpnI GATC 1 cut(s) 620
DpnII GATC 1 cut(s) 618
DriI GACNNNNNGTC 1 cut(s) 145
EaeI YGGCCR 1 cut(s) 350
Eam1104I CTCTTC 3 cut(s) 686, 728, 790
Eam1105I GACNNNNNGTC 1 cut(s) 145
EarI CTCTTC 3 cut(s) 686, 728, 790
Ecl136II GAGCTC 2 cut(s) 57, 358
Eco130I CCWWGG 4 cut(s) 333, 597, 726, 837
Eco24I GRGCYC 3 cut(s) 59, 323, 360
Eco47I GGWCC 2 cut(s) 147, 594
Eco53kI GAGCTC 2 cut(s) 57, 358
Eco72I CACGTG 1 cut(s) 97
Eco81I CCTNAGG 1 cut(s) 21
Eco88I CYCGRG 1 cut(s) 589
EcoICRI GAGCTC 2 cut(s) 57, 358
EcoO109I RGGNCCY 1 cut(s) 594
EcoRI GAATTC 2 cut(s) 48, 376
EcoRII CCWGG 1 cut(s) 149
EcoT14I CCWWGG 4 cut(s) 333, 597, 726, 837
EcoT38I GRGCYC 3 cut(s) 59, 323, 360
ErhI CCWWGG 4 cut(s) 333, 597, 726, 837
FaeI CATG 3 cut(s) 134, 238, 364
FaiI YATR 5 cut(s) 132, 193, 236, 362, 611
FaqI GGGAC 2 cut(s) 303, 607
FatI CATG 3 cut(s) 130, 234, 360
FblI GTMKAC 1 cut(s) 785
Fnu4HI GCNGC 2 cut(s) 750, 816
FriOI GRGCYC 3 cut(s) 59, 323, 360
Fsp4HI GCNGC 2 cut(s) 750, 816
FspBI CTAG 2 cut(s) 480, 672
GlaI GCGC 1 cut(s) 159
GluI GCNGC 2 cut(s) 750, 816
HaeIII GGCC 3 cut(s) 73, 205, 352
HapII CCGG 1 cut(s) 455
HhaI GCGC 1 cut(s) 160
Hin1II CATG 3 cut(s) 134, 238, 364
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HincII GTYRAC 3 cut(s) 682, 766, 786
HindII GTYRAC 3 cut(s) 682, 766, 786
HindIII AAGCTT 1 cut(s) 468
HinfI GANTC 2 cut(s) 8, 782
HpaI GTTAAC 1 cut(s) 682
HpaII CCGG 1 cut(s) 455
Hpy166II GTNNAC 4 cut(s) 669, 682, 766, 786
Hpy188I TCNGA 7 cut(s) 13, 54, 139, 313, 325, 623, 648
Hpy188III TCNNGA 3 cut(s) 23, 263, 825
Hpy8I GTNNAC 4 cut(s) 669, 682, 766, 786
HpyAV CCTTC 1 cut(s) 595
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 3 cut(s) 31, 416, 551
HpyF10VI GCNNNNNNNGC 2 cut(s) 172, 557
HpyF3I CTNAG 5 cut(s) 21, 53, 324, 626, 843
HpySE526I ACGT 1 cut(s) 96
Hsp92II CATG 3 cut(s) 134, 238, 364
HspAI GCGC 1 cut(s) 158
KspAI GTTAAC 1 cut(s) 682
Kzo9I GATC 1 cut(s) 618
LmnI GCTCC 2 cut(s) 62, 110
LpnPI CCDG 9 cut(s) 8, 136, 163, 324, 366, 468, 647, 804, 810
MaeI CTAG 2 cut(s) 480, 672
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 5 cut(s) 194, 402, 507, 544, 577
MalI GATC 1 cut(s) 620
MboI GATC 1 cut(s) 618
MboII GAAGA 4 cut(s) 251, 703, 745, 807
MfeI CAATTG 1 cut(s) 386
MhlI GDGCHC 3 cut(s) 59, 323, 360
MlsI TGGCCA 1 cut(s) 352
MluCI AATT 6 cut(s) 26, 48, 219, 229, 376, 386
MluNI TGGCCA 1 cut(s) 352
MlyI GAGTC 2 cut(s) 17, 791
MmeI TCCRAC 1 cut(s) 84
MnlI CCTC 7 cut(s) 30, 259, 630, 633, 733, 739, 791
Mox20I TGGCCA 1 cut(s) 352
MscI TGGCCA 1 cut(s) 352
MseI TTAA 1 cut(s) 681
Msp20I TGGCCA 1 cut(s) 352
MspA1I CMGCKG 1 cut(s) 818
MspI CCGG 1 cut(s) 455
MspR9I CCNGG 1 cut(s) 151
MunI CAATTG 1 cut(s) 386
MvaI CCWGG 1 cut(s) 151
MvnI CGCG 1 cut(s) 605
MwoI GCNNNNNNNGC 2 cut(s) 172, 557
NdeII GATC 1 cut(s) 618
NlaIII CATG 3 cut(s) 134, 238, 364
NlaIV GGNNCC 4 cut(s) 106, 449, 595, 632
NmeAIII GCCGAG 1 cut(s) 479
NmuCI GTSAC 2 cut(s) 194, 577
PcsI WCGNNNNNNNCGW 1 cut(s) 175
PkrI GCNGC 2 cut(s) 751, 817
PleI GAGTC 2 cut(s) 16, 790
PmaCI CACGTG 1 cut(s) 97
PmlI CACGTG 1 cut(s) 97
PpsI GAGTC 2 cut(s) 16, 790
Ppu21I YACGTR 1 cut(s) 97
PpuMI RGGWCCY 1 cut(s) 594
PshAI GACNNNNGTC 1 cut(s) 599
Psp124BI GAGCTC 2 cut(s) 59, 360
Psp5II RGGWCCY 1 cut(s) 594
Psp6I CCWGG 1 cut(s) 149
PspCI CACGTG 1 cut(s) 97
PspGI CCWGG 1 cut(s) 149
PspN4I GGNNCC 4 cut(s) 106, 449, 595, 632
PspPI GGNCC 4 cut(s) 71, 147, 204, 594
PspPPI RGGWCCY 1 cut(s) 594
SacI GAGCTC 2 cut(s) 59, 360
SalI GTCGAC 1 cut(s) 784
SaqAI TTAA 1 cut(s) 681
SatI GCNGC 2 cut(s) 750, 816
Sau3AI GATC 1 cut(s) 618
Sau96I GGNCC 4 cut(s) 71, 147, 204, 594
SchI GAGTC 2 cut(s) 17, 791
ScrFI CCNGG 1 cut(s) 151
SduI GDGCHC 3 cut(s) 59, 323, 360
SinI GGWCC 2 cut(s) 147, 594
SmlI CTYRAG 1 cut(s) 517
SmoI CTYRAG 1 cut(s) 517
Sse9I AATT 6 cut(s) 26, 48, 219, 229, 376, 386
SsiI CCGC 3 cut(s) 605, 749, 816
SspMI CTAG 2 cut(s) 480, 672
SstI GAGCTC 2 cut(s) 59, 360
StyD4I CCNGG 1 cut(s) 149
StyI CCWWGG 4 cut(s) 333, 597, 726, 837
TaiI ACGT 1 cut(s) 99
TaqI TCGA 3 cut(s) 169, 744, 785
TasI AATT 6 cut(s) 26, 48, 219, 229, 376, 386
TauI GCSGC 2 cut(s) 752, 818
Tru1I TTAA 1 cut(s) 681
Tru9I TTAA 1 cut(s) 681
TscAI CASTG 1 cut(s) 586
TseFI GTSAC 2 cut(s) 194, 577
Tsp45I GTSAC 2 cut(s) 194, 577
TspDTI ATGAA 3 cut(s) 251, 360, 675
TspGWI ACGGA 2 cut(s) 60, 440
TspRI CASTG 1 cut(s) 586
VpaK11BI GGWCC 2 cut(s) 147, 594
XapI RAATTY 2 cut(s) 48, 376
XmiI GTMKAC 1 cut(s) 785
XspI CTAG 2 cut(s) 480, 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.