Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004228

Physical Location & Seq

Genomic Coordinates Forward (+)

64172835 .. 64173566

Gene Structure 732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010206

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGCAAGGTTTTTCCGGTGGCCCTTTCTGAAGGTTGAGGTGTTTGTTCAGCCGCCGCGGGTTGTGGTCTTACCAGCGCCGATCGTCGTTTTACCTCCTCCTCCCGTCAAATCCGGTTTCTGGAACGTAGTGACGGCGTTCTCAGGCGCCGTTGTCGCGATTTCATCTTCGTTCACGCTCACCACCCAGCGGAAGCATCTACGGTTGGAGTGTGGAAGGGTCAGTAAGGAAGACAGGAGGGAGCAGAGGGAAGTCGAAGCTGCGAACAGAGAAGTCAGTAGGGAGAAGCGAGAAATAGATGCGGCAGAAAGAGAAGTCCAGAGGGAGAAGAGAGAAGAGCAAGCTGCACAGAGAGATGCTGACAGGGCGAAGAGAGAGGGGGAAAATGGTTATTGGAAAAATGGAGGGATTGAAAGCCATGGAATCCGAGTGTTTTGTAGTAGGGGCGATTTAGAGGTGTGCTCAGATGTAGTTCTAGGCTCTAAGAAGAGCAATGAAGGTGGGACAGATGACAGGCACCTTAGTCAGAATGTAAGGGGGAGAATTGAGCTAGAGGATTTTGATTCTAATACCTTAGTTGCAATAGGTAGATGGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB_2

Protein Analysis

200

Amino Acids

22.63

Weight (kDa)

8.49

Isoelectric Point (pI)

48.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004228)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00410
malus_domestica	MD04G1004400.v1.1 MD17G1181400.v1.1
prunus_persica	Prupe.1G004100_v2.0.a1
pyrus_communis	pycom04g00450
rosa_chinensis	RchiOBHm_Chr4g0385811
rosa_laevigata	RLG00000010206 RLG00000010212 RLG00000010227 RLG00000010229
rosa_multiflora	Rmu_co8457409.1_g000001 Rmu_sc0004773.1_g000002 Rmu_sc0008728.1_g000012 Rmu_sc0015537.1_g000002 Rmu_sc0029486.1_g000001
rosa_roxburghii	Rroxscaffold_5G00333310
rosa_rugosa	Rorug03G0060400 Rorug03G0300500 Rorug03G0300900 Rorug04G0011200
rosa_samantha	Rh4AG004500 Rh4AG004800 Rh4AG005200 Rh4AG005600 Rh4BG004100 Rh4DG004300 Rh4DG004700 Rh4DG005900 Rh4DG006200 Rh4DG080400
rosa_wichuraiana	Rw4G000410 Rw4G000420 Rw4G000430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	146, 516
AccII	CGCG	2 cut(s)	58, 158
AciI	CCGC	5 cut(s)	53, 56, 58, 190, 302
AcuI	CTGAAG	1 cut(s)	50
AcyI	GRCGYC	1 cut(s)	147
AfiI	CCNNNNNNNGG	2 cut(s)	120, 189
AgsI	TTSAA	1 cut(s)	413
AluBI	AGCT	3 cut(s)	260, 344, 550
AluI	AGCT	3 cut(s)	260, 344, 550
Alw21I	GWGCWC	1 cut(s)	464
AoxI	GGCC	1 cut(s)	20
ApeKI	GCWGC	2 cut(s)	260, 344
AspLEI	GCGC	2 cut(s)	79, 149
AspS9I	GGNCC	1 cut(s)	21
AsuHPI	GGTGA	1 cut(s)	172
BanI	GGYRCC	2 cut(s)	146, 516
BbsI	GAAGAC	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	464
BbvI	GCAGC	2 cut(s)	247, 331
BccI	CCATC	1 cut(s)	585
BceAI	ACGGC	2 cut(s)	134, 150
BfaI	CTAG	2 cut(s)	476, 551
BfoI	RGCGCY	2 cut(s)	80, 150
BisI	GCNGC	5 cut(s)	53, 56, 261, 303, 345
BlsI	GCNGC	5 cut(s)	54, 57, 262, 304, 346
BmgT120I	GGNCC	1 cut(s)	21
BmiI	GGNNCC	2 cut(s)	148, 518
BmsI	GCATC	3 cut(s)	205, 289, 346
BpiI	GAAGAC	1 cut(s)	237
BplI	GAGNNNNNCTC	2 cut(s)	446, 478
BsaHI	GRCGYC	1 cut(s)	147
BsaJI	CCNNGG	2 cut(s)	56, 418
BsaWI	WCCGGW	2 cut(s)	15, 113
Bsc4I	CCNNNNNNNGG	2 cut(s)	120, 189
Bse3DI	GCAATG	1 cut(s)	499
BseDI	CCNNGG	2 cut(s)	56, 418
BseLI	CCNNNNNNNGG	2 cut(s)	120, 189
BseMI	GCAATG	1 cut(s)	499
BseMII	CTCAG	2 cut(s)	156, 477
BseRI	GAGGAG	2 cut(s)	87, 90
BseXI	GCAGC	2 cut(s)	247, 331
BseYI	CCCAGC	1 cut(s)	186
BsgI	GTGCAG	1 cut(s)	330
Bsh1236I	CGCG	2 cut(s)	58, 158
Bsh1285I	CGRYCG	1 cut(s)	84
BshFI	GGCC	1 cut(s)	22
BshNI	GGYRCC	2 cut(s)	146, 516
BsiEI	CGRYCG	1 cut(s)	84
BsiHKAI	GWGCWC	1 cut(s)	464
BsiSI	CCGG	2 cut(s)	16, 114
BslFI	GGGAC	1 cut(s)	517
BslI	CCNNNNNNNGG	2 cut(s)	120, 189
BsmFI	GGGAC	1 cut(s)	517
BsnI	GGCC	1 cut(s)	22
Bsp1286I	GDGCHC	1 cut(s)	464
Bsp143I	GATC	1 cut(s)	81
Bsp19I	CCATGG	1 cut(s)	418
Bsp68I	TCGCGA	1 cut(s)	158
BspACI	CCGC	5 cut(s)	53, 56, 58, 190, 302
BspANI	GGCC	1 cut(s)	22
BspCNI	CTCAG	2 cut(s)	155, 476
BspFNI	CGCG	2 cut(s)	58, 158
BspLI	GGNNCC	2 cut(s)	148, 518
BspQI	GCTCTTC	2 cut(s)	330, 482
BspT107I	GGYRCC	2 cut(s)	146, 516
BsrDI	GCAATG	1 cut(s)	499
BssECI	CCNNGG	2 cut(s)	56, 418
BssMI	GATC	1 cut(s)	81
BssNI	GRCGYC	1 cut(s)	147
BssT1I	CCWWGG	1 cut(s)	418
Bst4CI	ACNGT	1 cut(s)	204
Bst6I	CTCTTC	4 cut(s)	323, 330, 365, 482
BstACI	GRCGYC	1 cut(s)	147
BstC8I	GCNNGC	1 cut(s)	342
BstDEI	CTNAG	5 cut(s)	142, 463, 483, 521, 574
BstDSI	CCRYGG	2 cut(s)	56, 418
BstFNI	CGCG	2 cut(s)	58, 158
BstH2I	RGCGCY	2 cut(s)	80, 150
BstHHI	GCGC	2 cut(s)	79, 149
BstKTI	GATC	1 cut(s)	84
BstMBI	GATC	1 cut(s)	81
BstMCI	CGRYCG	1 cut(s)	84
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 365
BstUI	CGCG	2 cut(s)	58, 158
BstV1I	GCAGC	2 cut(s)	247, 331
BstV2I	GAAGAC	1 cut(s)	237
BsuRI	GGCC	1 cut(s)	22
BtgI	CCRYGG	2 cut(s)	56, 418
BtuMI	TCGCGA	1 cut(s)	158
Cac8I	GCNNGC	1 cut(s)	342
CfoI	GCGC	2 cut(s)	79, 149
Cfr13I	GGNCC	1 cut(s)	21
Cfr42I	CCGCGG	1 cut(s)	59
CspCI	CAANNNNNGTGG	2 cut(s)	481, 516
CviAII	CATG	1 cut(s)	419
CviJI	RGCY	7 cut(s)	22, 52, 260, 344, 417, 480, 550
CviKI_1	RGCY	7 cut(s)	22, 52, 260, 344, 417, 480, 550
DdeI	CTNAG	5 cut(s)	142, 463, 483, 521, 574
DinI	GGCGCC	1 cut(s)	148
DpnI	GATC	1 cut(s)	83
DpnII	GATC	1 cut(s)	81
Eam1104I	CTCTTC	4 cut(s)	323, 330, 365, 482
EarI	CTCTTC	4 cut(s)	323, 330, 365, 482
Eco130I	CCWWGG	1 cut(s)	418
Eco57I	CTGAAG	1 cut(s)	50
EcoT14I	CCWWGG	1 cut(s)	418
EgeI	GGCGCC	1 cut(s)	148
EheI	GGCGCC	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	418
FaeI	CATG	1 cut(s)	422
FaiI	YATR	1 cut(s)	420
FaqI	GGGAC	1 cut(s)	517
FatI	CATG	1 cut(s)	418
FauI	CCCGC	1 cut(s)	51
Fnu4HI	GCNGC	5 cut(s)	53, 56, 261, 303, 345
Fsp4HI	GCNGC	5 cut(s)	53, 56, 261, 303, 345
FspBI	CTAG	2 cut(s)	476, 551
GlaI	GCGC	2 cut(s)	78, 148
GluI	GCNGC	5 cut(s)	53, 56, 261, 303, 345
GsaI	CCCAGC	1 cut(s)	190
HaeII	RGCGCY	2 cut(s)	80, 150
HaeIII	GGCC	1 cut(s)	22
HapII	CCGG	2 cut(s)	16, 114
HhaI	GCGC	2 cut(s)	79, 149
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	1 cut(s)	422
Hin6I	GCGC	2 cut(s)	77, 147
HinP1I	GCGC	2 cut(s)	77, 147
HinfI	GANTC	2 cut(s)	423, 563
HpaII	CCGG	2 cut(s)	16, 114
HphI	GGTGA	1 cut(s)	172
Hpy166II	GTNNAC	1 cut(s)	174
Hpy188I	TCNGA	4 cut(s)	30, 428, 466, 528
Hpy188III	TCNNGA	3 cut(s)	121, 157, 319
Hpy8I	GTNNAC	1 cut(s)	174
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	3 cut(s)	25, 210, 491
HpyCH4III	ACNGT	1 cut(s)	204
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	2 cut(s)	347, 581
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 365
HpyF3I	CTNAG	5 cut(s)	142, 463, 483, 521, 574
HpySE526I	ACGT	1 cut(s)	126
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	1 cut(s)	422
HspAI	GCGC	2 cut(s)	77, 147
KasI	GGCGCC	1 cut(s)	146
KspI	CCGCGG	1 cut(s)	59
Kzo9I	GATC	1 cut(s)	81
LguI	GCTCTTC	2 cut(s)	330, 482
LmnI	GCTCC	1 cut(s)	241
Lsp1109I	GCAGC	2 cut(s)	247, 331
LweI	GCATC	3 cut(s)	205, 289, 346
MaeI	CTAG	2 cut(s)	476, 551
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	1 cut(s)	83
MboI	GATC	1 cut(s)	81
MboII	GAAGA	6 cut(s)	159, 242, 340, 347, 382, 499
MhlI	GDGCHC	1 cut(s)	464
MluCI	AATT	1 cut(s)	543
Mly113I	GGCGCC	1 cut(s)	147
MmeI	TCCRAC	1 cut(s)	186
MspA1I	CMGCKG	2 cut(s)	58, 190
MspI	CCGG	2 cut(s)	16, 114
MvnI	CGCG	2 cut(s)	58, 158
MwoI	GCNNNNNNNGC	2 cut(s)	155, 365
NarI	GGCGCC	1 cut(s)	147
NcoI	CCATGG	1 cut(s)	418
NdeII	GATC	1 cut(s)	81
NlaIII	CATG	1 cut(s)	422
NlaIV	GGNNCC	2 cut(s)	148, 518
NmuCI	GTSAC	1 cut(s)	130
NruI	TCGCGA	1 cut(s)	158
PciSI	GCTCTTC	2 cut(s)	330, 482
PfeI	GAWTC	2 cut(s)	423, 563
PkrI	GCNGC	5 cut(s)	54, 57, 262, 304, 346
Ple19I	CGATCG	1 cut(s)	84
PluTI	GGCGCC	1 cut(s)	150
PspFI	CCCAGC	1 cut(s)	186
PspN4I	GGNNCC	2 cut(s)	148, 518
PspPI	GGNCC	1 cut(s)	21
PvuI	CGATCG	1 cut(s)	84
RruI	TCGCGA	1 cut(s)	158
SacII	CCGCGG	1 cut(s)	59
SapI	GCTCTTC	2 cut(s)	330, 482
SatI	GCNGC	5 cut(s)	53, 56, 261, 303, 345
Sau3AI	GATC	1 cut(s)	81
Sau96I	GGNCC	1 cut(s)	21
SduI	GDGCHC	1 cut(s)	464
SfaNI	GCATC	3 cut(s)	205, 289, 346
SfoI	GGCGCC	1 cut(s)	148
Sfr303I	CCGCGG	1 cut(s)	59
SgrBI	CCGCGG	1 cut(s)	59
Sse9I	AATT	1 cut(s)	543
SsiI	CCGC	5 cut(s)	53, 56, 58, 190, 302
SspDI	GGCGCC	1 cut(s)	146
SspMI	CTAG	2 cut(s)	476, 551
StyI	CCWWGG	1 cut(s)	418
TaaI	ACNGT	1 cut(s)	204
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	1 cut(s)	255
TasI	AATT	1 cut(s)	543
TauI	GCSGC	3 cut(s)	55, 58, 305
TfiI	GAWTC	2 cut(s)	423, 563
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	2 cut(s)	260, 344
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	2 cut(s)	153, 510
XspI	CTAG	2 cut(s)	476, 551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.