Rmu_sc0004773.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004773.1
OG0004228
Physical Location & Seq
Reverse (-)
6724 .. 7161
438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004773.1_g000002.1.cds

Sequence Viewer

Length: 438 bp
ctggctgaccagaaaaaccgtttctggtacgtagtcactgccttctctggcaccctggtcgcggttacgtcttggatcggactaaggaaccagaggaggcttctgaaaatggagaatgaaaggttcactagggaatttaacttggagaagagagaaatctccaaggagaagagagatgtggaagcagagaaaagagaaatcgccaaggagaagaaagaggtcgaggtggcacaaagagaagtcaacaaggagaagagagggttcgaggcggcagagagagaagtcaacaaggagaagagagaggtcgaggcggcacagagagaagtcaacaaggagaagagagaggtaaaagagagtcgacaaggagaagagggagatggaaaagagccgctggttctggaagtagccccaaggctgagtggtaatatttcaacctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

17.03

Weight (kDa)

9.1

Isoelectric Point (pI)

44.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 50
AccI GTMKAC 1 cut(s) 358
AccII CGCG 1 cut(s) 62
AciI CCGC 4 cut(s) 62, 269, 311, 389
AclWI GGATC 1 cut(s) 83
AcsI RAATTY 1 cut(s) 134
AfaI GTAC 1 cut(s) 29
AfiI CCNNNNNNNGG 1 cut(s) 61
AgsI TTSAA 1 cut(s) 432
AjnI CCWGG 1 cut(s) 54
AlwI GGATC 1 cut(s) 83
ApoI RAATTY 1 cut(s) 134
BanI GGYRCC 1 cut(s) 50
BccI CCATC 1 cut(s) 371
BcgI CGANNNNNNTGC 2 cut(s) 40, 74
BciT130I CCWGG 1 cut(s) 56
BfaI CTAG 1 cut(s) 129
BisI GCNGC 3 cut(s) 270, 312, 389
BlsI GCNGC 3 cut(s) 271, 313, 390
Bme1390I CCNGG 1 cut(s) 56
BmiI GGNNCC 2 cut(s) 52, 89
BmrFI CCNGG 1 cut(s) 56
BsaAI YACGTR 1 cut(s) 31
BsaJI CCNNGG 4 cut(s) 54, 162, 204, 410
Bsc4I CCNNNNNNNGG 1 cut(s) 61
BseBI CCWGG 1 cut(s) 56
BseDI CCNNGG 4 cut(s) 54, 162, 204, 410
BseLI CCNNNNNNNGG 1 cut(s) 61
BseMII CTCAG 1 cut(s) 407
BseRI GAGGAG 1 cut(s) 109
Bsh1236I CGCG 1 cut(s) 62
BshNI GGYRCC 1 cut(s) 50
BslI CCNNNNNNNGG 1 cut(s) 61
Bsp143I GATC 1 cut(s) 75
BspACI CCGC 4 cut(s) 62, 269, 311, 389
BspCNI CTCAG 1 cut(s) 408
BspFNI CGCG 1 cut(s) 62
BspLI GGNNCC 2 cut(s) 52, 89
BspPI GGATC 1 cut(s) 83
BspT107I GGYRCC 1 cut(s) 50
BssECI CCNNGG 4 cut(s) 54, 162, 204, 410
BssMI GATC 1 cut(s) 75
BssT1I CCWWGG 3 cut(s) 162, 204, 410
Bst2UI CCWGG 1 cut(s) 56
Bst4CI ACNGT 1 cut(s) 20
Bst6I CTCTTC 6 cut(s) 143, 164, 248, 290, 332, 363
BstBAI YACGTR 1 cut(s) 31
BstDEI CTNAG 2 cut(s) 83, 416
BstFNI CGCG 1 cut(s) 62
BstKTI GATC 1 cut(s) 78
BstMBI GATC 1 cut(s) 75
BstNI CCWGG 1 cut(s) 56
BstSCI CCNGG 1 cut(s) 54
BstSNI TACGTA 1 cut(s) 31
BstUI CGCG 1 cut(s) 62
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 1 cut(s) 36
Csp6I GTAC 1 cut(s) 28
CviJI RGCY 5 cut(s) 5, 100, 388, 407, 415
CviKI_1 RGCY 5 cut(s) 5, 100, 388, 407, 415
CviQI GTAC 1 cut(s) 28
DdeI CTNAG 2 cut(s) 83, 416
DpnI GATC 1 cut(s) 77
DpnII GATC 1 cut(s) 75
Eam1104I CTCTTC 6 cut(s) 143, 164, 248, 290, 332, 363
EarI CTCTTC 6 cut(s) 143, 164, 248, 290, 332, 363
Eco105I TACGTA 1 cut(s) 31
Eco130I CCWWGG 3 cut(s) 162, 204, 410
EcoRII CCWGG 1 cut(s) 54
EcoT14I CCWWGG 3 cut(s) 162, 204, 410
ErhI CCWWGG 3 cut(s) 162, 204, 410
FblI GTMKAC 1 cut(s) 358
Fnu4HI GCNGC 3 cut(s) 270, 312, 389
Fsp4HI GCNGC 3 cut(s) 270, 312, 389
FspBI CTAG 1 cut(s) 129
GluI GCNGC 3 cut(s) 270, 312, 389
HincII GTYRAC 4 cut(s) 244, 286, 328, 359
HindII GTYRAC 4 cut(s) 244, 286, 328, 359
HinfI GANTC 1 cut(s) 355
Hpy166II GTNNAC 5 cut(s) 126, 244, 286, 328, 359
Hpy188I TCNGA 2 cut(s) 80, 105
Hpy188III TCNNGA 1 cut(s) 398
Hpy8I GTNNAC 5 cut(s) 126, 244, 286, 328, 359
HpyAV CCTTC 1 cut(s) 52
HpyCH4III ACNGT 1 cut(s) 20
HpyCH4IV ACGT 2 cut(s) 30, 68
HpyF3I CTNAG 2 cut(s) 83, 416
HpySE526I ACGT 2 cut(s) 30, 68
Kzo9I GATC 1 cut(s) 75
LpnPI CCDG 8 cut(s) 10, 23, 33, 41, 68, 104, 377, 383
MaeI CTAG 1 cut(s) 129
MaeII ACGT 2 cut(s) 30, 68
MaeIII GTNAC 2 cut(s) 34, 64
MalI GATC 1 cut(s) 77
MboI GATC 1 cut(s) 75
MboII GAAGA 7 cut(s) 160, 181, 223, 265, 307, 349, 380
MluCI AATT 1 cut(s) 134
MlyI GAGTC 1 cut(s) 364
MseI TTAA 1 cut(s) 138
MspA1I CMGCKG 1 cut(s) 391
MspR9I CCNGG 1 cut(s) 56
MvaI CCWGG 1 cut(s) 56
MvnI CGCG 1 cut(s) 62
NdeII GATC 1 cut(s) 75
NlaIV GGNNCC 2 cut(s) 52, 89
NmuCI GTSAC 1 cut(s) 34
PkrI GCNGC 3 cut(s) 271, 313, 390
PleI GAGTC 1 cut(s) 363
PpsI GAGTC 1 cut(s) 363
Ppu21I YACGTR 1 cut(s) 31
Psp6I CCWGG 1 cut(s) 54
PspGI CCWGG 1 cut(s) 54
PspN4I GGNNCC 2 cut(s) 52, 89
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
SalI GTCGAC 1 cut(s) 357
SaqAI TTAA 1 cut(s) 138
SatI GCNGC 3 cut(s) 270, 312, 389
Sau3AI GATC 1 cut(s) 75
SchI GAGTC 1 cut(s) 364
ScrFI CCNGG 1 cut(s) 56
SetI ASST 8 cut(s) 33, 71, 125, 222, 228, 306, 348, 437
SnaBI TACGTA 1 cut(s) 31
Sse9I AATT 1 cut(s) 134
SsiI CCGC 4 cut(s) 62, 269, 311, 389
SspI AATATT 1 cut(s) 427
SspMI CTAG 1 cut(s) 129
StyD4I CCNGG 1 cut(s) 54
StyI CCWWGG 3 cut(s) 162, 204, 410
TaaI ACNGT 1 cut(s) 20
TaiI ACGT 2 cut(s) 33, 71
TaqI TCGA 4 cut(s) 222, 264, 306, 358
TasI AATT 1 cut(s) 134
TauI GCSGC 3 cut(s) 272, 314, 391
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TscAI CASTG 1 cut(s) 43
TseFI GTSAC 1 cut(s) 34
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 1 cut(s) 132
TspRI CASTG 1 cut(s) 43
XapI RAATTY 1 cut(s) 134
XmiI GTMKAC 1 cut(s) 358
XspI CTAG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.