Prupe.1G218900_v2.0.a1

GEM-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0004816
Physical Location & Seq
Forward (+)
23376004 .. 23377645
1642 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G218900.1

Sequence Viewer

Length: 900 bp
ATGGCAGGCATACCAGAAGTAACACACCCCCATAACCAATCATCTCAAGCAGCCAAAGACCCAGAATCCAATTCTCCATCCCTTGCCACTGTTACTGATCATCAGGACTCACAGACGCCTCAGCAACCACCGGCACCACATTCATCTTCATCATCTCCAGCAGAGGAGGAAGACACCAAGAAATATGGGACCCACATCATGGGAGCCCCAGCAGCCCCAAATGTCCACCCAGACAACCAGAGAGCCGCCCAATGGAAAGCATCTGATCACCAGCAAATTCACCAGCAGCAACAACCCTATGTCCAGTGCGCTCCCATAAACAAGCCCAGCAACAACCCTTTTGAGCCTGCGATCCACGTGTTCAATTCGTGGAGTGCCAAGGCCGAGACCATAGCTAGAAACATCTGGCACAACCTCAAAACAGGGCCCTCTGTTTCTGAAGCTGCCTGGGGGAAGGTCAACTTGACGGCAAAAGCCTTAACTGAAGGTGGATTTGAGTCTCTATTTAAGCAGATTTTCGCGACTGATCCAAACGAGAAGCTCAAGAAGACCTTCGCCTGCTACCTTTCCAGTTCCACAGGTCCTGTCGCTGGCACTCTCTATCTCTCAACTGCCAGGCTTGCTTTCTGCAGCGATCGTCCTTTAACTTTCACTACCCCATCTGGACAGGCAGCTTGGAGCTACTACAAGGTGATGATACCTTTGGCAAATATAGGTACAGTGAACCCTGTGGTTATGAAAGAGAGTCCACCAGAGAAGTACATTCAGATTGTCACCATAGATGGCCATGAATTCTGGTTTATGGGATTTATTAATTTCGAAAAGGCATCCCATCACCTCTTAGACAGCGTCTCAGATTTCAGAACAGCTGGGAATTCAGCGCAACCGGTTGTTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAM

Protein Analysis

300

Amino Acids

32.6

Weight (kDa)

6.34

Isoelectric Point (pI)

53.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 133
AccB7I CCANNNNNTGG 1 cut(s) 199
AccII CGCG 1 cut(s) 521
AciI CCGC 1 cut(s) 246
AclWI GGATC 2 cut(s) 346, 521
AcoI YGGCCR 1 cut(s) 784
AcsI RAATTY 3 cut(s) 276, 791, 874
AcuI CTGAAG 2 cut(s) 459, 504
AcvI CACGTG 1 cut(s) 358
AcyI GRCGYC 1 cut(s) 116
AfaI GTAC 2 cut(s) 718, 761
AfiI CCNNNNNNNGG 4 cut(s) 199, 252, 590, 893
AflIII ACRYGT 1 cut(s) 357
AgeI ACCGGT 1 cut(s) 886
AgsI TTSAA 1 cut(s) 364
AjnI CCWGG 2 cut(s) 446, 614
AluBI AGCT 6 cut(s) 395, 443, 541, 674, 681, 869
AluI AGCT 6 cut(s) 395, 443, 541, 674, 681, 869
Alw26I GTCTC 3 cut(s) 380, 504, 856
AlwI GGATC 2 cut(s) 346, 521
AlwNI CAGNNNCTG 1 cut(s) 584
AoxI GGCC 3 cut(s) 381, 425, 784
ApaI GGGCCC 1 cut(s) 429
ApeKI GCWGC 6 cut(s) 50, 212, 286, 443, 630, 671
ApoI RAATTY 3 cut(s) 276, 791, 874
AseI ATTAAT 1 cut(s) 813
AsiGI ACCGGT 1 cut(s) 886
Asp700I GAANNNNTTC 1 cut(s) 551
AspLEI GCGC 2 cut(s) 311, 883
AspS9I GGNCC 4 cut(s) 189, 425, 426, 581
AsuHPI GGTGA 5 cut(s) 260, 272, 703, 766, 827
AsuII TTCGAA 1 cut(s) 819
AvaII GGWCC 2 cut(s) 189, 581
BaeGI GKGCMC 1 cut(s) 429
BalI TGGCCA 1 cut(s) 786
BanI GGYRCC 1 cut(s) 133
BanII GRGCYC 2 cut(s) 208, 429
BbrPI CACGTG 1 cut(s) 358
BbsI GAAGAC 2 cut(s) 177, 554
BbvCI CCTCAGC 1 cut(s) 120
BbvI GCAGC 6 cut(s) 62, 224, 298, 430, 642, 683
BccI CCATC 4 cut(s) 85, 667, 776, 840
BceAI ACGGC 1 cut(s) 483
BciT130I CCWGG 2 cut(s) 448, 616
BclI TGATCA 2 cut(s) 97, 265
BcoDI GTCTC 3 cut(s) 380, 504, 856
BfaI CTAG 2 cut(s) 396, 898
BfmI CTRYAG 1 cut(s) 628
BisI GCNGC 7 cut(s) 51, 213, 246, 287, 444, 631, 672
BlsI GCNGC 7 cut(s) 52, 214, 247, 288, 445, 632, 673
Bme1390I CCNGG 2 cut(s) 448, 616
Bme18I GGWCC 2 cut(s) 189, 581
BmgT120I GGNCC 4 cut(s) 189, 425, 426, 581
BmiI GGNNCC 5 cut(s) 135, 190, 191, 205, 427
BmrFI CCNGG 2 cut(s) 448, 616
BmsI GCATC 2 cut(s) 269, 836
BpiI GAAGAC 2 cut(s) 177, 554
BpmI CTGGAG 1 cut(s) 141
Bpu10I CCTNAGC 1 cut(s) 120
Bpu14I TTCGAA 1 cut(s) 819
BpuEI CTTGAG 2 cut(s) 30, 527
BsaAI YACGTR 1 cut(s) 358
BsaHI GRCGYC 1 cut(s) 116
BsaI GGTCTC 1 cut(s) 380
BsaJI CCNNGG 2 cut(s) 378, 447
BsaWI WCCGGW 1 cut(s) 886
Bsc4I CCNNNNNNNGG 4 cut(s) 199, 252, 590, 893
Bse118I RCCGGY 2 cut(s) 130, 886
Bse1I ACTGG 2 cut(s) 304, 570
BseBI CCWGG 2 cut(s) 448, 616
BseDI CCNNGG 2 cut(s) 378, 447
BseGI GGATG 2 cut(s) 77, 827
BseLI CCNNNNNNNGG 4 cut(s) 199, 252, 590, 893
BseMII CTCAG 2 cut(s) 134, 867
BseNI ACTGG 2 cut(s) 304, 570
BseRI GAGGAG 1 cut(s) 179
BseSI GKGCMC 1 cut(s) 429
BseXI GCAGC 6 cut(s) 62, 224, 298, 430, 642, 683
BseYI CCCAGC 3 cut(s) 208, 326, 869
Bsh1236I CGCG 1 cut(s) 521
Bsh1285I CGRYCG 1 cut(s) 637
BshFI GGCC 3 cut(s) 383, 427, 786
BshNI GGYRCC 1 cut(s) 133
BshTI ACCGGT 1 cut(s) 886
BsiEI CGRYCG 1 cut(s) 637
BsiSI CCGG 2 cut(s) 131, 887
BslFI GGGAC 1 cut(s) 202
BslI CCNNNNNNNGG 4 cut(s) 199, 252, 590, 893
BsmAI GTCTC 3 cut(s) 380, 504, 856
BsmBI CGTCTC 1 cut(s) 856
BsmFI GGGAC 1 cut(s) 202
BsnI GGCC 3 cut(s) 383, 427, 786
Bso31I GGTCTC 1 cut(s) 380
Bsp119I TTCGAA 1 cut(s) 819
Bsp120I GGGCCC 1 cut(s) 425
Bsp1286I GDGCHC 2 cut(s) 208, 429
Bsp143I GATC 5 cut(s) 97, 265, 351, 526, 634
Bsp68I TCGCGA 1 cut(s) 521
BspACI CCGC 1 cut(s) 246
BspANI GGCC 3 cut(s) 383, 427, 786
BspCNI CTCAG 2 cut(s) 133, 866
BspFNI CGCG 1 cut(s) 521
BspLI GGNNCC 5 cut(s) 135, 190, 191, 205, 427
BspMAI CTGCAG 1 cut(s) 632
BspPI GGATC 2 cut(s) 346, 521
BspT104I TTCGAA 1 cut(s) 819
BspT107I GGYRCC 1 cut(s) 133
BspTNI GGTCTC 1 cut(s) 380
BsrFI RCCGGY 2 cut(s) 130, 886
BsrI ACTGG 2 cut(s) 304, 570
BssAI RCCGGY 2 cut(s) 130, 886
BssECI CCNNGG 2 cut(s) 378, 447
BssMI GATC 5 cut(s) 97, 265, 351, 526, 634
BssNI GRCGYC 1 cut(s) 116
BssT1I CCWWGG 1 cut(s) 378
Bst2UI CCWGG 2 cut(s) 448, 616
Bst4CI ACNGT 2 cut(s) 91, 721
BstACI GRCGYC 1 cut(s) 116
BstBAI YACGTR 1 cut(s) 358
BstBI TTCGAA 1 cut(s) 819
BstC8I GCNNGC 5 cut(s) 7, 348, 559, 592, 621
BstDEI CTNAG 3 cut(s) 120, 841, 853
BstF5I GGATG 2 cut(s) 77, 827
BstFNI CGCG 1 cut(s) 521
BstHHI GCGC 2 cut(s) 311, 883
BstKTI GATC 5 cut(s) 100, 268, 354, 529, 637
BstMAI GTCTC 3 cut(s) 380, 504, 856
BstMBI GATC 5 cut(s) 97, 265, 351, 526, 634
BstMCI CGRYCG 1 cut(s) 637
BstMWI GCNNNNNNNGC 2 cut(s) 212, 620
BstNI CCWGG 2 cut(s) 448, 616
BstSCI CCNGG 2 cut(s) 446, 614
BstSFI CTRYAG 1 cut(s) 628
BstSLI GKGCMC 1 cut(s) 429
BstUI CGCG 1 cut(s) 521
BstV1I GCAGC 6 cut(s) 62, 224, 298, 430, 642, 683
BstV2I GAAGAC 2 cut(s) 177, 554
BsuRI GGCC 3 cut(s) 383, 427, 786
BtsCI GGATG 2 cut(s) 77, 827
BtsIMutI CAGTG 3 cut(s) 87, 311, 726
BtuMI TCGCGA 1 cut(s) 521
Cac8I GCNNGC 5 cut(s) 7, 348, 559, 592, 621
CaiI CAGNNNCTG 1 cut(s) 584
CfoI GCGC 2 cut(s) 311, 883
Cfr10I RCCGGY 2 cut(s) 130, 886
Cfr13I GGNCC 4 cut(s) 189, 425, 426, 581
CseI GACGC 2 cut(s) 124, 838
Csp6I GTAC 2 cut(s) 717, 760
CspAI ACCGGT 1 cut(s) 886
CviAII CATG 2 cut(s) 199, 788
CviQI GTAC 2 cut(s) 717, 760
DdeI CTNAG 3 cut(s) 120, 841, 853
DpnI GATC 5 cut(s) 99, 267, 353, 528, 636
DpnII GATC 5 cut(s) 97, 265, 351, 526, 634
EaeI YGGCCR 1 cut(s) 784
Eco130I CCWWGG 1 cut(s) 378
Eco24I GRGCYC 2 cut(s) 208, 429
Eco31I GGTCTC 1 cut(s) 380
Eco47I GGWCC 2 cut(s) 189, 581
Eco57I CTGAAG 2 cut(s) 459, 504
Eco72I CACGTG 1 cut(s) 358
EcoO109I RGGNCCY 4 cut(s) 189, 425, 426, 581
EcoRI GAATTC 2 cut(s) 791, 874
EcoRII CCWGG 2 cut(s) 446, 614
EcoT14I CCWWGG 1 cut(s) 378
EcoT38I GRGCYC 2 cut(s) 208, 429
ErhI CCWWGG 1 cut(s) 378
Esp3I CGTCTC 1 cut(s) 856
FaeI CATG 2 cut(s) 202, 791
FalI AAGNNNNNCTT 4 cut(s) 446, 478, 536, 568
FaqI GGGAC 1 cut(s) 202
FatI CATG 2 cut(s) 198, 787
FbaI TGATCA 2 cut(s) 97, 265
Fnu4HI GCNGC 7 cut(s) 51, 213, 246, 287, 444, 631, 672
FokI GGATG 2 cut(s) 64, 814
FriOI GRGCYC 2 cut(s) 208, 429
Fsp4HI GCNGC 7 cut(s) 51, 213, 246, 287, 444, 631, 672
FspBI CTAG 2 cut(s) 396, 898
GlaI GCGC 2 cut(s) 310, 882
GluI GCNGC 7 cut(s) 51, 213, 246, 287, 444, 631, 672
GsaI CCCAGC 3 cut(s) 212, 330, 873
GsuI CTGGAG 1 cut(s) 141
HaeIII GGCC 3 cut(s) 383, 427, 786
HapII CCGG 2 cut(s) 131, 887
HgaI GACGC 2 cut(s) 124, 838
HhaI GCGC 2 cut(s) 311, 883
Hin1I GRCGYC 1 cut(s) 116
Hin1II CATG 2 cut(s) 202, 791
Hin6I GCGC 2 cut(s) 309, 881
HinP1I GCGC 2 cut(s) 309, 881
HincII GTYRAC 1 cut(s) 460
HindII GTYRAC 1 cut(s) 460
HinfI GANTC 4 cut(s) 65, 107, 497, 745
HpaII CCGG 2 cut(s) 131, 887
HphI GGTGA 5 cut(s) 260, 272, 703, 766, 827
Hpy166II GTNNAC 4 cut(s) 226, 460, 724, 749
Hpy188I TCNGA 5 cut(s) 265, 439, 768, 856, 863
Hpy188III TCNNGA 4 cut(s) 104, 520, 544, 663
Hpy8I GTNNAC 4 cut(s) 226, 460, 724, 749
HpyAV CCTTC 3 cut(s) 448, 479, 562
HpyCH4III ACNGT 2 cut(s) 91, 721
HpyCH4IV ACGT 1 cut(s) 357
HpyCH4V TGCA 1 cut(s) 630
HpyF10VI GCNNNNNNNGC 2 cut(s) 212, 620
HpyF3I CTNAG 3 cut(s) 120, 841, 853
HpySE526I ACGT 1 cut(s) 357
Hsp92I GRCGYC 1 cut(s) 116
Hsp92II CATG 2 cut(s) 202, 791
HspAI GCGC 2 cut(s) 309, 881
KflI GGGWCCC 1 cut(s) 189
Ksp22I TGATCA 2 cut(s) 97, 265
Kzo9I GATC 5 cut(s) 97, 265, 351, 526, 634
LmnI GCTCC 3 cut(s) 203, 316, 678
Lsp1109I GCAGC 6 cut(s) 62, 224, 298, 430, 642, 683
LweI GCATC 2 cut(s) 269, 836
MaeI CTAG 2 cut(s) 396, 898
MaeII ACGT 1 cut(s) 357
MaeIII GTNAC 3 cut(s) 19, 91, 772
MalI GATC 5 cut(s) 99, 267, 353, 528, 636
MboI GATC 5 cut(s) 97, 265, 351, 526, 634
MboII GAAGA 3 cut(s) 138, 182, 559
MhlI GDGCHC 2 cut(s) 208, 429
MlsI TGGCCA 1 cut(s) 786
MluCI AATT 6 cut(s) 70, 276, 364, 791, 814, 874
MluNI TGGCCA 1 cut(s) 786
MlyI GAGTC 3 cut(s) 101, 506, 754
MnlI CCTC 6 cut(s) 129, 157, 160, 425, 439, 848
Mox20I TGGCCA 1 cut(s) 786
MroXI GAANNNNTTC 1 cut(s) 551
MscI TGGCCA 1 cut(s) 786
MseI TTAA 4 cut(s) 479, 507, 644, 813
Msp20I TGGCCA 1 cut(s) 786
MspA1I CMGCKG 1 cut(s) 869
MspI CCGG 2 cut(s) 131, 887
MspR9I CCNGG 2 cut(s) 448, 616
MvaI CCWGG 2 cut(s) 448, 616
MvnI CGCG 1 cut(s) 521
MwoI GCNNNNNNNGC 2 cut(s) 212, 620
NdeII GATC 5 cut(s) 97, 265, 351, 526, 634
NlaIII CATG 2 cut(s) 202, 791
NlaIV GGNNCC 5 cut(s) 135, 190, 191, 205, 427
NmeAIII GCCGAG 1 cut(s) 409
NmuCI GTSAC 1 cut(s) 772
NruI TCGCGA 1 cut(s) 521
NspV TTCGAA 1 cut(s) 819
PdmI GAANNNNTTC 1 cut(s) 551
PfeI GAWTC 1 cut(s) 65
PflFI GACNNNGTC 1 cut(s) 848
PflMI CCANNNNNTGG 1 cut(s) 199
PinAI ACCGGT 1 cut(s) 886
PkrI GCNGC 7 cut(s) 52, 214, 247, 288, 445, 632, 673
Ple19I CGATCG 1 cut(s) 637
PleI GAGTC 3 cut(s) 101, 505, 753
PmaCI CACGTG 1 cut(s) 358
PmlI CACGTG 1 cut(s) 358
PpsI GAGTC 3 cut(s) 101, 505, 753
Ppu21I YACGTR 1 cut(s) 358
PpuMI RGGWCCY 2 cut(s) 189, 581
PshBI ATTAAT 1 cut(s) 813
Psp5II RGGWCCY 2 cut(s) 189, 581
Psp6I CCWGG 2 cut(s) 446, 614
PspCI CACGTG 1 cut(s) 358
PspFI CCCAGC 3 cut(s) 208, 326, 869
PspGI CCWGG 2 cut(s) 446, 614
PspN4I GGNNCC 5 cut(s) 135, 190, 191, 205, 427
PspOMI GGGCCC 1 cut(s) 425
PspPI GGNCC 4 cut(s) 189, 425, 426, 581
PspPPI RGGWCCY 2 cut(s) 189, 581
PstI CTGCAG 1 cut(s) 632
PstNI CAGNNNCTG 1 cut(s) 584
PsyI GACNNNGTC 1 cut(s) 848
PvuI CGATCG 1 cut(s) 637
PvuII CAGCTG 1 cut(s) 869
RruI TCGCGA 1 cut(s) 521
RsaI GTAC 2 cut(s) 718, 761
RsaNI GTAC 2 cut(s) 717, 760
SaqAI TTAA 4 cut(s) 479, 507, 644, 813
SatI GCNGC 7 cut(s) 51, 213, 246, 287, 444, 631, 672
Sau3AI GATC 5 cut(s) 97, 265, 351, 526, 634
Sau96I GGNCC 4 cut(s) 189, 425, 426, 581
SchI GAGTC 3 cut(s) 101, 506, 754
ScrFI CCNGG 2 cut(s) 448, 616
SduI GDGCHC 2 cut(s) 208, 429
SfaNI GCATC 2 cut(s) 269, 836
SfcI CTRYAG 1 cut(s) 628
SfuI TTCGAA 1 cut(s) 819
SinI GGWCC 2 cut(s) 189, 581
SmlI CTYRAG 2 cut(s) 45, 542
SmoI CTYRAG 2 cut(s) 45, 542
Sse9I AATT 6 cut(s) 70, 276, 364, 791, 814, 874
SsiI CCGC 1 cut(s) 246
SspMI CTAG 2 cut(s) 396, 898
StyD4I CCNGG 2 cut(s) 446, 614
StyI CCWWGG 1 cut(s) 378
TaaI ACNGT 2 cut(s) 91, 721
TaiI ACGT 1 cut(s) 360
TaqI TCGA 1 cut(s) 819
TasI AATT 6 cut(s) 70, 276, 364, 791, 814, 874
TatI WGTACW 1 cut(s) 759
TauI GCSGC 1 cut(s) 248
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 4 cut(s) 479, 507, 644, 813
Tru9I TTAA 4 cut(s) 479, 507, 644, 813
TscAI CASTG 3 cut(s) 94, 311, 726
TseFI GTSAC 1 cut(s) 772
TseI GCWGC 6 cut(s) 50, 212, 286, 443, 630, 671
Tsp45I GTSAC 1 cut(s) 772
TspDTI ATGAA 4 cut(s) 132, 138, 752, 804
TspRI CASTG 3 cut(s) 94, 311, 726
Tth111I GACNNNGTC 1 cut(s) 848
Van91I CCANNNNNTGG 1 cut(s) 199
VpaK11BI GGWCC 2 cut(s) 189, 581
VspI ATTAAT 1 cut(s) 813
XapI RAATTY 3 cut(s) 276, 791, 874
XmnI GAANNNNTTC 1 cut(s) 551
XspI CTAG 2 cut(s) 396, 898
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.