Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004816

Physical Location & Seq

Genomic Coordinates Reverse (-)

27027877 .. 27029997

Gene Structure 2121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G311600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGAACAACAAGACCAACCAAGGATCCCAACCTCTGTACCCCTCCGTTTCTCCTCCCACCGCAGAAAATGACACAAACCCTTTTCTTCAAACACCTCCGCCATCATATTCATCGTTGAAAACCCAACCACCCCAATACCCCTCCATTGCAAATCCTACAGCTCAAGAAATCAATCCTTTTTATCAAACACCTGAGCTATCGTCCTCATTGCAGGGAACCCAAAAGCCCTCCGATTTCACTCCTTCCACGCCAAACCCTTCTGATCACCCAGCACCATCCCCATCTCCATCCCCATCCTCACCGCAGAAAACCCAAGATCTCAAACAAGCTCATCATCATGAAGAAGATATTCCATCATCAAGTTCGTCTTCATCAATACCAGCACCAGCACCAGCAAATGAAGAAGAGAAAGCAGAGCAATGGGGGACTCACGTGATGGGGCACCCTGCTGTCCCAACATGCCATCCAGACAACAAAAAGGCAGCTCTGTGGGGTGCTGCTGGCACTGAACAAGCCCAAAGCTTCCACCATCCCTACCTCCAATACAAACCCATTGAAAAGTCCAACAACGGCCCCATGGAATCCATGCTCCATGTCTTCAACTCCTGGAGCAACAGGGCCGAGTCCATGGCCAACAACATCTGGCACAACCTGAAAACTGGGACATCGGTGTCTGGAGCTGCGTGGGGGAAGATGAATGTGACAGCCAAAGCAATTACAGGGGGTGGATTTGAGGCTCTGTACAAGCAGTCATTTGCCACTTATCCCAACGAGAAGCTGAACAAGTCGTTTGCCTGTTATCTCTCAACATCCACTGGACCAGTTGCTGGAACTCTCTATCTCTCTAATCTTCATACAGCTTTTTGCAGCGACCGCCCCTTGTCCTTCACTGCCCCCTCTGGTCAGGTCACCTGGAGCTATTACAAGATTATGGTGCCTTTGGGAAATATTGCAACAATCAATCCGGTGGTGATGAGGGAAAATTCAACCGAAAAGTACATCCAGATTGTGACAATAGACGGCCATGATTTCTGGTTCATGGGTTTTGTTAATTATGAAAAGGCGTCCAGGCATCTGACCCAGAGTATCTCAACTTTCGTAGCATCTGGAATTGCCGTCAACCCAGGCGTTGCTGTAGCAGACGAAAAGCCTGACAAGGCTGACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAM

Protein Analysis

390

Amino Acids

42.27

Weight (kDa)

6.15

Isoelectric Point (pI)

54.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13200 AT5G13200
fragaria_vesca	FvH4_4g23040 FvH4_6g54120
malus_domestica	MD09G1005200.v1.1 MD16G1127100.v1.1 MD17G1009200.v1.1
prunus_persica	Prupe.1G218900_v2.0.a1 Prupe.3G311600_v2.0.a1
pyrus_communis	pycom111g00380 pycom17g00410
rosa_chinensis	RchiOBHm_Chr2g0176291 RchiOBHm_Chr4g0429311
rosa_laevigata	RLG00000007082 RLG00000022400
rosa_multiflora	Rmu_co8294909.1_g000001 Rmu_sc0000054.1_g000005 Rmu_sc0000405.1_g000025
rosa_roxburghii	Rroxscaffold_2G00076600 Rroxscaffold_5G00370920
rosa_rugosa	Rorug02G0593000 Rorug04G0235100
rosa_samantha	Rh2AG671300 Rh2BG682800 Rh2CG645400 Rh2DG696200 Rh4BG296300 Rh4CG312000 Rh4DG293400
rosa_wichuraiana	Rw2G055060 Rw4G025180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	670
AccB1I	GGYRCC	2 cut(s)	441, 934
AccB7I	CCANNNNNTGG	1 cut(s)	827
AciI	CCGC	4 cut(s)	60, 98, 302, 874
AclWI	GGATC	2 cut(s)	18, 31
AcoI	YGGCCR	2 cut(s)	630, 1021
AcsI	RAATTY	1 cut(s)	982
AcvI	CACGTG	1 cut(s)	433
AcyI	GRCGYC	1 cut(s)	1064
AfaI	GTAC	3 cut(s)	38, 743, 998
AfiI	CCNNNNNNNGG	1 cut(s)	827
AgsI	TTSAA	5 cut(s)	89, 118, 557, 601, 987
AjnI	CCWGG	4 cut(s)	605, 911, 1067, 1123
AluBI	AGCT	9 cut(s)	161, 196, 329, 485, 522, 680, 778, 860, 918
AluI	AGCT	9 cut(s)	161, 196, 329, 485, 522, 680, 778, 860, 918
AlwI	GGATC	2 cut(s)	18, 31
AlwNI	CAGNNNCTG	1 cut(s)	827
AoxI	GGCC	4 cut(s)	571, 618, 630, 1021
ApeKI	GCWGC	4 cut(s)	482, 497, 680, 867
ApoI	RAATTY	1 cut(s)	982
Asp700I	GAANNNNTTC	1 cut(s)	348
AspS9I	GGNCC	3 cut(s)	572, 618, 818
AsuHPI	GGTGA	4 cut(s)	257, 291, 901, 982
AvaII	GGWCC	1 cut(s)	818
BaeGI	GKGCMC	1 cut(s)	444
BaeI	ACNNNNGTAYC	2 cut(s)	20, 53
BalI	TGGCCA	1 cut(s)	632
BamHI	GGATCC	1 cut(s)	23
BanI	GGYRCC	2 cut(s)	441, 934
BbrPI	CACGTG	1 cut(s)	433
BbsI	GAAGAC	2 cut(s)	360, 589
BbvI	GCAGC	4 cut(s)	484, 494, 667, 879
BccI	CCATC	9 cut(s)	109, 283, 289, 295, 301, 361, 430, 471, 537
BceAI	ACGGC	3 cut(s)	586, 1036, 1100
BciT130I	CCWGG	4 cut(s)	607, 913, 1069, 1125
BclI	TGATCA	1 cut(s)	262
BfaI	CTAG	1 cut(s)	1168
BfmI	CTRYAG	2 cut(s)	156, 1134
BglII	AGATCT	1 cut(s)	316
BisI	GCNGC	4 cut(s)	483, 498, 681, 868
BlsI	GCNGC	4 cut(s)	484, 499, 682, 869
Bme1390I	CCNGG	4 cut(s)	607, 913, 1069, 1125
Bme18I	GGWCC	1 cut(s)	818
BmgT120I	GGNCC	3 cut(s)	572, 618, 818
BmiI	GGNNCC	5 cut(s)	25, 217, 443, 574, 936
BmrFI	CCNGG	4 cut(s)	607, 913, 1069, 1125
BmrI	ACTGGG	1 cut(s)	669
BmsI	GCATC	2 cut(s)	1081, 1112
BmuI	ACTGGG	1 cut(s)	669
BpiI	GAAGAC	2 cut(s)	360, 589
BpmI	CTGGAG	3 cut(s)	628, 696, 934
Bpu10I	CCTNAGC	1 cut(s)	192
BpuEI	CTTGAG	1 cut(s)	147
BsaAI	YACGTR	1 cut(s)	433
BsaHI	GRCGYC	1 cut(s)	1064
BsaJI	CCNNGG	4 cut(s)	19, 576, 627, 1123
BsaWI	WCCGGW	1 cut(s)	964
Bsc4I	CCNNNNNNNGG	1 cut(s)	827
Bse1I	ACTGG	3 cut(s)	664, 820, 821
Bse3DI	GCAATG	3 cut(s)	144, 206, 425
BseBI	CCWGG	4 cut(s)	607, 913, 1069, 1125
BseDI	CCNNGG	4 cut(s)	19, 576, 627, 1123
BseGI	GGATG	7 cut(s)	275, 287, 293, 463, 529, 809, 999
BseLI	CCNNNNNNNGG	1 cut(s)	827
BseMI	GCAATG	3 cut(s)	144, 206, 425
BseMII	CTCAG	1 cut(s)	183
BseNI	ACTGG	3 cut(s)	664, 820, 821
BseRI	GAGGAG	1 cut(s)	42
BseSI	GKGCMC	1 cut(s)	444
BseXI	GCAGC	4 cut(s)	484, 494, 667, 879
BseYI	CCCAGC	1 cut(s)	268
Bsh1285I	CGRYCG	1 cut(s)	874
BshFI	GGCC	4 cut(s)	573, 620, 632, 1023
BshNI	GGYRCC	2 cut(s)	441, 934
BsiEI	CGRYCG	1 cut(s)	874
BsiSI	CCGG	1 cut(s)	965
BslFI	GGGAC	3 cut(s)	437, 439, 676
BslI	CCNNNNNNNGG	1 cut(s)	827
BsmFI	GGGAC	3 cut(s)	437, 439, 676
BsnI	GGCC	4 cut(s)	573, 620, 632, 1023
Bsp1286I	GDGCHC	1 cut(s)	444
Bsp1407I	TGTACA	1 cut(s)	741
Bsp143I	GATC	3 cut(s)	23, 262, 316
Bsp19I	CCATGG	2 cut(s)	576, 627
BspACI	CCGC	4 cut(s)	60, 98, 302, 874
BspANI	GGCC	4 cut(s)	573, 620, 632, 1023
BspCNI	CTCAG	1 cut(s)	184
BspHI	TCATGA	1 cut(s)	337
BspLI	GGNNCC	5 cut(s)	25, 217, 443, 574, 936
BspPI	GGATC	2 cut(s)	18, 31
BspT107I	GGYRCC	2 cut(s)	441, 934
BsrDI	GCAATG	3 cut(s)	144, 206, 425
BsrGI	TGTACA	1 cut(s)	741
BsrI	ACTGG	3 cut(s)	664, 820, 821
BssECI	CCNNGG	4 cut(s)	19, 576, 627, 1123
BssMI	GATC	3 cut(s)	23, 262, 316
BssNI	GRCGYC	1 cut(s)	1064
BssT1I	CCWWGG	3 cut(s)	19, 576, 627
Bst2UI	CCWGG	4 cut(s)	607, 913, 1069, 1125
Bst6I	CTCTTC	1 cut(s)	399
BstACI	GRCGYC	1 cut(s)	1064
BstAUI	TGTACA	1 cut(s)	741
BstBAI	YACGTR	1 cut(s)	433
BstC8I	GCNNGC	1 cut(s)	502
BstDEI	CTNAG	1 cut(s)	192
BstDSI	CCRYGG	2 cut(s)	576, 627
BstEII	GGTNACC	1 cut(s)	907
BstF5I	GGATG	7 cut(s)	275, 287, 293, 463, 529, 809, 999
BstKTI	GATC	3 cut(s)	26, 265, 319
BstMBI	GATC	3 cut(s)	23, 262, 316
BstMCI	CGRYCG	1 cut(s)	874
BstMWI	GCNNNNNNNGC	1 cut(s)	873
BstNI	CCWGG	4 cut(s)	607, 913, 1069, 1125
BstNSI	RCATGY	1 cut(s)	462
BstPI	GGTNACC	1 cut(s)	907
BstSCI	CCNGG	4 cut(s)	605, 911, 1067, 1123
BstSFI	CTRYAG	2 cut(s)	156, 1134
BstSLI	GKGCMC	1 cut(s)	444
BstV1I	GCAGC	4 cut(s)	484, 494, 667, 879
BstV2I	GAAGAC	2 cut(s)	360, 589
BstX2I	RGATCY	2 cut(s)	23, 316
BstYI	RGATCY	2 cut(s)	23, 316
BsuRI	GGCC	4 cut(s)	573, 620, 632, 1023
BtgI	CCRYGG	2 cut(s)	576, 627
BtsCI	GGATG	7 cut(s)	275, 287, 293, 463, 529, 809, 999
BtsI	GCAGTG	1 cut(s)	888
BtsIMutI	CAGTG	3 cut(s)	504, 813, 888
Cac8I	GCNNGC	1 cut(s)	502
CaiI	CAGNNNCTG	1 cut(s)	827
CciI	TCATGA	1 cut(s)	337
Cfr13I	GGNCC	3 cut(s)	572, 618, 818
CseI	GACGC	1 cut(s)	1053
Csp6I	GTAC	3 cut(s)	37, 742, 997
CviAII	CATG	8 cut(s)	338, 459, 577, 586, 593, 628, 1025, 1039
CviQI	GTAC	3 cut(s)	37, 742, 997
DdeI	CTNAG	1 cut(s)	192
DpnI	GATC	3 cut(s)	25, 264, 318
DpnII	GATC	3 cut(s)	23, 262, 316
DrdI	GACNNNNNNGTC	1 cut(s)	670
DseDI	GACNNNNNNGTC	1 cut(s)	670
EaeI	YGGCCR	2 cut(s)	630, 1021
Eam1104I	CTCTTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	399
EciI	GGCGGA	1 cut(s)	87
Eco130I	CCWWGG	3 cut(s)	19, 576, 627
Eco47I	GGWCC	1 cut(s)	818
Eco72I	CACGTG	1 cut(s)	433
Eco91I	GGTNACC	1 cut(s)	907
EcoO65I	GGTNACC	1 cut(s)	907
EcoRII	CCWGG	4 cut(s)	605, 911, 1067, 1123
EcoT14I	CCWWGG	3 cut(s)	19, 576, 627
ErhI	CCWWGG	3 cut(s)	19, 576, 627
FaeI	CATG	8 cut(s)	341, 462, 580, 589, 596, 631, 1028, 1042
FalI	AAGNNNNNCTT	2 cut(s)	352, 384
FaqI	GGGAC	3 cut(s)	437, 439, 676
FatI	CATG	8 cut(s)	337, 458, 576, 585, 592, 627, 1024, 1038
FbaI	TGATCA	1 cut(s)	262
Fnu4HI	GCNGC	4 cut(s)	483, 498, 681, 868
FokI	GGATG	7 cut(s)	262, 274, 280, 450, 516, 796, 986
Fsp4HI	GCNGC	4 cut(s)	483, 498, 681, 868
FspBI	CTAG	1 cut(s)	1168
GluI	GCNGC	4 cut(s)	483, 498, 681, 868
GsaI	CCCAGC	1 cut(s)	272
GsuI	CTGGAG	3 cut(s)	628, 696, 934
HaeIII	GGCC	4 cut(s)	573, 620, 632, 1023
HapII	CCGG	1 cut(s)	965
HgaI	GACGC	1 cut(s)	1053
Hin1I	GRCGYC	1 cut(s)	1064
Hin1II	CATG	8 cut(s)	341, 462, 580, 589, 596, 631, 1028, 1042
HincII	GTYRAC	1 cut(s)	1120
HindII	GTYRAC	1 cut(s)	1120
HindIII	AAGCTT	1 cut(s)	520
HinfI	GANTC	3 cut(s)	427, 581, 623
HpaII	CCGG	1 cut(s)	965
HphI	GGTGA	4 cut(s)	257, 291, 901, 982
Hpy166II	GTNNAC	1 cut(s)	1120
Hpy188I	TCNGA	3 cut(s)	232, 262, 1077
Hpy188III	TCNNGA	6 cut(s)	164, 338, 467, 675, 1003, 1107
Hpy8I	GTNNAC	1 cut(s)	1120
HpyAV	CCTTC	3 cut(s)	252, 267, 895
HpyCH4IV	ACGT	1 cut(s)	432
HpyCH4V	TGCA	4 cut(s)	149, 211, 867, 953
HpyF10VI	GCNNNNNNNGC	1 cut(s)	873
HpyF3I	CTNAG	1 cut(s)	192
HpySE526I	ACGT	1 cut(s)	432
Hsp92I	GRCGYC	1 cut(s)	1064
Hsp92II	CATG	8 cut(s)	341, 462, 580, 589, 596, 631, 1028, 1042
Ksp22I	TGATCA	1 cut(s)	262
Kzo9I	GATC	3 cut(s)	23, 262, 316
LmnI	GCTCC	4 cut(s)	594, 609, 677, 915
Lsp1109I	GCAGC	4 cut(s)	484, 494, 667, 879
LweI	GCATC	2 cut(s)	1081, 1112
MaeI	CTAG	1 cut(s)	1168
MaeII	ACGT	1 cut(s)	432
MaeIII	GTNAC	3 cut(s)	700, 907, 1009
MalI	GATC	3 cut(s)	25, 264, 318
MboI	GATC	3 cut(s)	23, 262, 316
MboII	GAAGA	9 cut(s)	77, 353, 356, 360, 413, 416, 589, 703, 842
MflI	RGATCY	2 cut(s)	23, 316
MhlI	GDGCHC	1 cut(s)	444
MlsI	TGGCCA	1 cut(s)	632
MluCI	AATT	4 cut(s)	714, 982, 1051, 1110
MluNI	TGGCCA	1 cut(s)	632
MlyI	GAGTC	2 cut(s)	421, 632
MmeI	TCCRAC	1 cut(s)	588
Mox20I	TGGCCA	1 cut(s)	632
MroXI	GAANNNNTTC	1 cut(s)	348
MscI	TGGCCA	1 cut(s)	632
MseI	TTAA	1 cut(s)	1050
MslI	CAYNNNNRTG	1 cut(s)	336
Msp20I	TGGCCA	1 cut(s)	632
MspI	CCGG	1 cut(s)	965
MspR9I	CCNGG	4 cut(s)	607, 913, 1069, 1125
MvaI	CCWGG	4 cut(s)	607, 913, 1069, 1125
MwoI	GCNNNNNNNGC	1 cut(s)	873
NcoI	CCATGG	2 cut(s)	576, 627
NdeII	GATC	3 cut(s)	23, 262, 316
NlaIII	CATG	8 cut(s)	341, 462, 580, 589, 596, 631, 1028, 1042
NlaIV	GGNNCC	5 cut(s)	25, 217, 443, 574, 936
NmeAIII	GCCGAG	1 cut(s)	646
NmuCI	GTSAC	3 cut(s)	700, 907, 1009
NspI	RCATGY	1 cut(s)	462
PagI	TCATGA	1 cut(s)	337
PdmI	GAANNNNTTC	1 cut(s)	348
PfeI	GAWTC	1 cut(s)	581
PflMI	CCANNNNNTGG	1 cut(s)	827
PfoI	TCCNGGA	1 cut(s)	605
PkrI	GCNGC	4 cut(s)	484, 499, 682, 869
PleI	GAGTC	2 cut(s)	421, 631
PmaCI	CACGTG	1 cut(s)	433
PmlI	CACGTG	1 cut(s)	433
PpsI	GAGTC	2 cut(s)	421, 631
Ppu21I	YACGTR	1 cut(s)	433
Psp6I	CCWGG	4 cut(s)	605, 911, 1067, 1123
PspCI	CACGTG	1 cut(s)	433
PspEI	GGTNACC	1 cut(s)	907
PspFI	CCCAGC	1 cut(s)	268
PspGI	CCWGG	4 cut(s)	605, 911, 1067, 1123
PspN4I	GGNNCC	5 cut(s)	25, 217, 443, 574, 936
PspPI	GGNCC	3 cut(s)	572, 618, 818
PstNI	CAGNNNCTG	1 cut(s)	827
PsuI	RGATCY	2 cut(s)	23, 316
RsaI	GTAC	3 cut(s)	38, 743, 998
RsaNI	GTAC	3 cut(s)	37, 742, 997
RseI	CAYNNNNRTG	1 cut(s)	336
SaqAI	TTAA	1 cut(s)	1050
SatI	GCNGC	4 cut(s)	483, 498, 681, 868
Sau3AI	GATC	3 cut(s)	23, 262, 316
Sau96I	GGNCC	3 cut(s)	572, 618, 818
SchI	GAGTC	2 cut(s)	421, 632
ScrFI	CCNGG	4 cut(s)	607, 913, 1069, 1125
SduI	GDGCHC	1 cut(s)	444
SfaNI	GCATC	2 cut(s)	1081, 1112
SfcI	CTRYAG	2 cut(s)	156, 1134
SinI	GGWCC	1 cut(s)	818
SmiMI	CAYNNNNRTG	1 cut(s)	336
SmlI	CTYRAG	1 cut(s)	162
SmoI	CTYRAG	1 cut(s)	162
Sse9I	AATT	4 cut(s)	714, 982, 1051, 1110
SsiI	CCGC	4 cut(s)	60, 98, 302, 874
SspI	AATATT	1 cut(s)	949
SspMI	CTAG	1 cut(s)	1168
StyD4I	CCNGG	4 cut(s)	605, 911, 1067, 1123
StyI	CCWWGG	3 cut(s)	19, 576, 627
TaiI	ACGT	1 cut(s)	435
TasI	AATT	4 cut(s)	714, 982, 1051, 1110
TatI	WGTACW	2 cut(s)	741, 996
TfiI	GAWTC	1 cut(s)	581
Tru1I	TTAA	1 cut(s)	1050
Tru9I	TTAA	1 cut(s)	1050
TscAI	CASTG	3 cut(s)	511, 820, 895
TseFI	GTSAC	3 cut(s)	700, 907, 1009
TseI	GCWGC	4 cut(s)	482, 497, 680, 867
Tsp45I	GTSAC	3 cut(s)	700, 907, 1009
TspDTI	ATGAA	9 cut(s)	17, 99, 354, 360, 414, 710, 842, 1027, 1071
TspGWI	ACGGA	1 cut(s)	34
TspRI	CASTG	3 cut(s)	511, 820, 895
Van91I	CCANNNNNTGG	1 cut(s)	827
VpaK11BI	GGWCC	1 cut(s)	818
XapI	RAATTY	1 cut(s)	982
XceI	RCATGY	1 cut(s)	462
XmnI	GAANNNNTTC	1 cut(s)	348
XspI	CTAG	1 cut(s)	1168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.