Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004816

Physical Location & Seq

Genomic Coordinates Forward (+)

71499302 .. 71501459

Gene Structure 2158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0593000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCCTTTCCACCTTGTCATAGTTTCATGTTTCAAACCCATGAAGATCCAGACCTCCACCTCTCTGCAGCTTCTTCCTCCCTCAACAATCTTCCCTCTTGTCCACCACAACACTTCCATGGTGGTGGGGGAGTGCCTTTCATGATGAAGAGATCGCTATCGTTTTCCGGGGTTGATGATAAATGCAATCACCATCACTATGATCACCAAGATCTGCATGGAGGAGGAGATCAAGATGATTTGTCTGATGATGGGTCACAGCTGATTGGGGAGAAGAAGAAAAGGCTGAACCTTGAGCAGGTTAAGACCCTTGAGAAGAGCTTTGAGATGGGGAACAAGCTTGAGCCTGAGAGGAAATTGCAGCTTGCTAAGGCTCTTGGTCTGCAGCCAAGACAGGTTGCCATATGGTTTCAGAACAGGAGGGCTAGGTGGAAGACAAAGCAGCTGGAGAAAGACTATGATGTCCTCAAGAAGAAATTTGATGCTCTCAAGGCTGACAATGATGCCCTTCAAGCTCACAACAAGAAACTTCAGGCTGAGTTATTGGCTGTAAAAGGTAGTAAAGATTCAAACTTCGGAGGGGGGCTTAACAATCATTTGAAGAAAGAGATTGATCAGGGTTCATGGAGTAATGGCAGTACTGATGACAACAGTTCTGATCATGTCAACTTAGACATGTCAAGAAGTACCACACCAGCAGCAAACAGCCCACAATCAAATTCCCAGATCACCAATGGATCAAAGAATCTTTTCCCATCATCCCTATGCAGGCCACCAAATGCTAGCATAACCCAACTCCTCCAAGGCTCATCAAGGTCAGACCTCCACTGCCTCAAAGTTGACCAGATGATTCAAGATGATCAAACTTTCTGCACCATGTTCAACAATGGCTCCATTGACCAAGACCACCAAGGTAGCTTCTGGCCATGGCCTTCTGAGCAGCCACACCATTTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAM

Protein Analysis

319

Amino Acids

35.72

Weight (kDa)

6.51

Isoelectric Point (pI)

56.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	92 - 145	3.1e-16	Homeodomain
HALZ	PF02183	147 - 185	8.5e-15	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13200 AT5G13200
fragaria_vesca	FvH4_4g23040 FvH4_6g54120
malus_domestica	MD09G1005200.v1.1 MD16G1127100.v1.1 MD17G1009200.v1.1
prunus_persica	Prupe.1G218900_v2.0.a1 Prupe.3G311600_v2.0.a1
pyrus_communis	pycom111g00380 pycom17g00410
rosa_chinensis	RchiOBHm_Chr2g0176291 RchiOBHm_Chr4g0429311
rosa_laevigata	RLG00000007082 RLG00000022400
rosa_multiflora	Rmu_co8294909.1_g000001 Rmu_sc0000054.1_g000005 Rmu_sc0000405.1_g000025
rosa_roxburghii	Rroxscaffold_2G00076600 Rroxscaffold_5G00370920
rosa_rugosa	Rorug02G0593000 Rorug04G0235100
rosa_samantha	Rh2AG671300 Rh2BG682800 Rh2CG645400 Rh2DG696200 Rh4BG296300 Rh4CG312000 Rh4DG293400
rosa_wichuraiana	Rw2G055060 Rw4G025180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	461
Acc36I	ACCTGC	1 cut(s)	289
AclWI	GGATC	2 cut(s)	41, 745
AcoI	YGGCCR	1 cut(s)	923
AcsI	RAATTY	2 cut(s)	476, 718
AcuI	CTGAAG	1 cut(s)	515
AfaI	GTAC	2 cut(s)	640, 688
AfiI	CCNNNNNNNGG	2 cut(s)	298, 768
AflIII	ACRYGT	1 cut(s)	675
AgsI	TTSAA	6 cut(s)	35, 512, 570, 601, 854, 883
AluBI	AGCT	8 cut(s)	71, 262, 321, 340, 364, 445, 515, 918
AluI	AGCT	8 cut(s)	71, 262, 321, 340, 364, 445, 515, 918
AlwI	GGATC	2 cut(s)	41, 745
AoxI	GGCC	4 cut(s)	3, 770, 923, 929
ApeKI	GCWGC	6 cut(s)	68, 361, 385, 442, 698, 940
ApoI	RAATTY	2 cut(s)	476, 718
Asp700I	GAANNNNTTC	1 cut(s)	749
AsuC2I	CCSGG	1 cut(s)	169
AsuHPI	GGTGA	3 cut(s)	182, 197, 721
AsuNHI	GCTAGC	1 cut(s)	782
BalI	TGGCCA	1 cut(s)	925
BbsI	GAAGAC	1 cut(s)	440
BbvI	GCAGC	6 cut(s)	80, 373, 397, 454, 710, 952
BccI	CCATC	4 cut(s)	201, 245, 322, 763
BclI	TGATCA	4 cut(s)	202, 613, 658, 859
BcnI	CCSGG	1 cut(s)	169
BfaI	CTAG	2 cut(s)	426, 783
BfmI	CTRYAG	2 cut(s)	66, 383
BfuAI	ACCTGC	1 cut(s)	289
BglII	AGATCT	1 cut(s)	211
BisI	GCNGC	6 cut(s)	69, 362, 386, 443, 699, 941
BlsI	GCNGC	6 cut(s)	70, 363, 387, 444, 700, 942
BmcAI	AGTACT	1 cut(s)	640
Bme1390I	CCNGG	1 cut(s)	169
BmiI	GGNNCC	1 cut(s)	892
BmrFI	CCNGG	1 cut(s)	169
BmsI	GCATC	2 cut(s)	472, 493
BmtI	GCTAGC	1 cut(s)	786
BpiI	GAAGAC	1 cut(s)	440
BpmI	CTGGAG	1 cut(s)	467
Bpu10I	CCTNAGC	1 cut(s)	369
BpuEI	CTTGAG	5 cut(s)	314, 332, 362, 452, 473
BpuMI	CCSGG	1 cut(s)	169
BsaBI	GATNNNNATC	1 cut(s)	157
BsaJI	CCNNGG	5 cut(s)	118, 168, 802, 910, 926
BsaXI	ACNNNNNCTCC	2 cut(s)	875, 905
Bsc4I	CCNNNNNNNGG	2 cut(s)	298, 768
Bse8I	GATNNNNATC	1 cut(s)	157
BseDI	CCNNGG	5 cut(s)	118, 168, 802, 910, 926
BseGI	GGATG	1 cut(s)	758
BseJI	GATNNNNATC	1 cut(s)	157
BseLI	CCNNNNNNNGG	2 cut(s)	298, 768
BseMII	CTCAG	3 cut(s)	339, 528, 927
BseRI	GAGGAG	3 cut(s)	237, 240, 788
BseXI	GCAGC	6 cut(s)	80, 373, 397, 454, 710, 952
BsgI	GTGCAG	1 cut(s)	856
BshFI	GGCC	4 cut(s)	5, 772, 925, 931
BsiSI	CCGG	1 cut(s)	168
BslI	CCNNNNNNNGG	2 cut(s)	298, 768
BsnI	GGCC	4 cut(s)	5, 772, 925, 931
Bsp19I	CCATGG	2 cut(s)	118, 926
BspANI	GGCC	4 cut(s)	5, 772, 925, 931
BspCNI	CTCAG	3 cut(s)	340, 529, 928
BspHI	TCATGA	1 cut(s)	141
BspLI	GGNNCC	1 cut(s)	892
BspMAI	CTGCAG	2 cut(s)	70, 387
BspMI	ACCTGC	1 cut(s)	289
BspOI	GCTAGC	1 cut(s)	786
BspPI	GGATC	2 cut(s)	41, 745
BspQI	GCTCTTC	1 cut(s)	311
BssECI	CCNNGG	5 cut(s)	118, 168, 802, 910, 926
BssT1I	CCWWGG	4 cut(s)	118, 802, 910, 926
Bst4CI	ACNGT	1 cut(s)	653
Bst6I	CTCTTC	2 cut(s)	143, 311
BstC8I	GCNNGC	3 cut(s)	366, 770, 784
BstDEI	CTNAG	5 cut(s)	348, 369, 537, 670, 936
BstDSI	CCRYGG	2 cut(s)	118, 926
BstENI	CCTNNNNNAGG	1 cut(s)	296
BstF5I	GGATG	1 cut(s)	758
BstMWI	GCNNNNNNNGC	3 cut(s)	491, 512, 937
BstNSI	RCATGY	1 cut(s)	679
BstSCI	CCNGG	1 cut(s)	167
BstSFI	CTRYAG	2 cut(s)	66, 383
BstV1I	GCAGC	6 cut(s)	80, 373, 397, 454, 710, 952
BstV2I	GAAGAC	1 cut(s)	440
BstX2I	RGATCY	2 cut(s)	46, 211
BstXI	CCANNNNNNTGG	1 cut(s)	125
BstYI	RGATCY	2 cut(s)	46, 211
BsuRI	GGCC	4 cut(s)	5, 772, 925, 931
BtgI	CCRYGG	2 cut(s)	118, 926
BtsCI	GGATG	1 cut(s)	758
BtsI	GCAGTG	1 cut(s)	826
BtsIMutI	CAGTG	1 cut(s)	826
BveI	ACCTGC	1 cut(s)	289
Cac8I	GCNNGC	3 cut(s)	366, 770, 784
CciI	TCATGA	1 cut(s)	141
Csp6I	GTAC	2 cut(s)	639, 687
CviQI	GTAC	2 cut(s)	639, 687
DdeI	CTNAG	5 cut(s)	348, 369, 537, 670, 936
DrdI	GACNNNNNNGTC	1 cut(s)	461
DseDI	GACNNNNNNGTC	1 cut(s)	461
EaeI	YGGCCR	1 cut(s)	923
Eam1104I	CTCTTC	2 cut(s)	143, 311
EarI	CTCTTC	2 cut(s)	143, 311
Eco130I	CCWWGG	4 cut(s)	118, 802, 910, 926
Eco57I	CTGAAG	1 cut(s)	515
EcoNI	CCTNNNNNAGG	1 cut(s)	296
EcoT14I	CCWWGG	4 cut(s)	118, 802, 910, 926
ErhI	CCWWGG	4 cut(s)	118, 802, 910, 926
FauNDI	CATATG	1 cut(s)	404
FbaI	TGATCA	4 cut(s)	202, 613, 658, 859
Fnu4HI	GCNGC	6 cut(s)	69, 362, 386, 443, 699, 941
FokI	GGATG	1 cut(s)	745
Fsp4HI	GCNGC	6 cut(s)	69, 362, 386, 443, 699, 941
FspBI	CTAG	2 cut(s)	426, 783
GluI	GCNGC	6 cut(s)	69, 362, 386, 443, 699, 941
GsuI	CTGGAG	1 cut(s)	467
HaeIII	GGCC	4 cut(s)	5, 772, 925, 931
HapII	CCGG	1 cut(s)	168
HincII	GTYRAC	2 cut(s)	667, 841
HindII	GTYRAC	2 cut(s)	667, 841
HindIII	AAGCTT	1 cut(s)	338
HinfI	GANTC	3 cut(s)	566, 745, 850
HpaII	CCGG	1 cut(s)	168
HphI	GGTGA	3 cut(s)	182, 197, 721
Hpy166II	GTNNAC	3 cut(s)	104, 667, 841
Hpy188I	TCNGA	6 cut(s)	247, 414, 578, 658, 820, 937
Hpy188III	TCNNGA	6 cut(s)	50, 142, 233, 469, 681, 854
Hpy8I	GTNNAC	3 cut(s)	104, 667, 841
HpyAV	CCTTC	2 cut(s)	518, 942
HpyCH4III	ACNGT	1 cut(s)	653
HpyCH4V	TGCA	7 cut(s)	68, 186, 217, 361, 385, 768, 873
HpyF10VI	GCNNNNNNNGC	3 cut(s)	491, 512, 937
HpyF3I	CTNAG	5 cut(s)	348, 369, 537, 670, 936
Ksp22I	TGATCA	4 cut(s)	202, 613, 658, 859
LguI	GCTCTTC	1 cut(s)	311
LmnI	GCTCC	1 cut(s)	896
Lsp1109I	GCAGC	6 cut(s)	80, 373, 397, 454, 710, 952
LweI	GCATC	2 cut(s)	472, 493
MaeI	CTAG	2 cut(s)	426, 783
MaeIII	GTNAC	1 cut(s)	255
MflI	RGATCY	2 cut(s)	46, 211
MlsI	TGGCCA	1 cut(s)	925
MluCI	AATT	3 cut(s)	356, 476, 718
MluNI	TGGCCA	1 cut(s)	925
Mox20I	TGGCCA	1 cut(s)	925
MroXI	GAANNNNTTC	1 cut(s)	749
MscI	TGGCCA	1 cut(s)	925
MseI	TTAA	2 cut(s)	303, 588
MslI	CAYNNNNRTG	4 cut(s)	117, 123, 198, 763
Msp20I	TGGCCA	1 cut(s)	925
MspA1I	CMGCKG	2 cut(s)	262, 445
MspI	CCGG	1 cut(s)	168
MspR9I	CCNGG	1 cut(s)	169
MwoI	GCNNNNNNNGC	3 cut(s)	491, 512, 937
NciI	CCSGG	1 cut(s)	169
NcoI	CCATGG	2 cut(s)	118, 926
NdeI	CATATG	1 cut(s)	404
NheI	GCTAGC	1 cut(s)	782
NlaIV	GGNNCC	1 cut(s)	892
NmuCI	GTSAC	1 cut(s)	255
NspI	RCATGY	1 cut(s)	679
PagI	TCATGA	1 cut(s)	141
PciI	ACATGT	1 cut(s)	675
PciSI	GCTCTTC	1 cut(s)	311
PdmI	GAANNNNTTC	1 cut(s)	749
PfeI	GAWTC	3 cut(s)	566, 745, 850
PkrI	GCNGC	6 cut(s)	70, 363, 387, 444, 700, 942
PscI	ACATGT	1 cut(s)	675
PspN4I	GGNNCC	1 cut(s)	892
PstI	CTGCAG	2 cut(s)	70, 387
PsuI	RGATCY	2 cut(s)	46, 211
PvuII	CAGCTG	2 cut(s)	262, 445
RsaI	GTAC	2 cut(s)	640, 688
RsaNI	GTAC	2 cut(s)	639, 687
RseI	CAYNNNNRTG	4 cut(s)	117, 123, 198, 763
SapI	GCTCTTC	1 cut(s)	311
SaqAI	TTAA	2 cut(s)	303, 588
SatI	GCNGC	6 cut(s)	69, 362, 386, 443, 699, 941
ScaI	AGTACT	1 cut(s)	640
ScrFI	CCNGG	1 cut(s)	169
SfaNI	GCATC	2 cut(s)	472, 493
SfcI	CTRYAG	2 cut(s)	66, 383
SmiMI	CAYNNNNRTG	4 cut(s)	117, 123, 198, 763
SmlI	CTYRAG	5 cut(s)	293, 311, 341, 467, 488
SmoI	CTYRAG	5 cut(s)	293, 311, 341, 467, 488
Sse9I	AATT	3 cut(s)	356, 476, 718
SspMI	CTAG	2 cut(s)	426, 783
StyD4I	CCNGG	1 cut(s)	167
StyI	CCWWGG	4 cut(s)	118, 802, 910, 926
TaaI	ACNGT	1 cut(s)	653
TasI	AATT	3 cut(s)	356, 476, 718
TatI	WGTACW	1 cut(s)	638
TfiI	GAWTC	3 cut(s)	566, 745, 850
Tru1I	TTAA	2 cut(s)	303, 588
Tru9I	TTAA	2 cut(s)	303, 588
TscAI	CASTG	1 cut(s)	833
TseFI	GTSAC	1 cut(s)	255
TseI	GCWGC	6 cut(s)	68, 361, 385, 442, 698, 940
Tsp45I	GTSAC	1 cut(s)	255
TspDTI	ATGAA	6 cut(s)	16, 57, 130, 161, 612, 944
TspRI	CASTG	1 cut(s)	833
XagI	CCTNNNNNAGG	1 cut(s)	296
XapI	RAATTY	2 cut(s)	476, 718
XceI	RCATGY	1 cut(s)	679
XcmI	CCANNNNNNNNNTGG	2 cut(s)	215, 731
XmnI	GAANNNNTTC	1 cut(s)	749
XspI	CTAG	2 cut(s)	426, 783
ZrmI	AGTACT	1 cut(s)	640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.