Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8294909.1

Orthogroup ID

OG0004816

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 805

Gene Structure 805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8294909.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

aaagctcagagcttccactatccgtacctccagtaccaacccattgatcacaacaacaaggccagcagctccagcaatcccactcaatctatgctcaatgtcttcaactcctggagccacaaagccgagtccatggcaaacaacatctggcacaaccttaaaacagggacatctgtgtccggagcagcatgggcgaagatgaacctgcaggcgaaagcattaacaggaggtggatttgaggctatctacaagcagacatttgcgacttatcccaacgagaagctcctcaaatcattcgcctgttatctctccacatccaccggaccagtcgccggaactctttacctgtccaatattcacacagctttttgcagcgaccggccattgtcattcactgcaccttccggtcaggtgacttggagctattacaaggttatggtgccgctggcaaatgttgcgactatcaatccagtggtgatgagggagaatccgactgagaagtacctccagattgtgaccattgacggccatgatttctggttcatggggtttgttaattatgaaaaagcatccaaacatcttactcagagtatctccactttcgtagcgtctggatttgcagtccaacctcccccatatgaaaagcatgctggtgctgaacatgatcatgatcatgatcacaagaagggaggtgacaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAM

Protein Analysis

233

Amino Acids

25.87

Weight (kDa)

8.71

Isoelectric Point (pI)

42.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13200 AT5G13200
fragaria_vesca	FvH4_4g23040 FvH4_6g54120
malus_domestica	MD09G1005200.v1.1 MD16G1127100.v1.1 MD17G1009200.v1.1
prunus_persica	Prupe.1G218900_v2.0.a1 Prupe.3G311600_v2.0.a1
pyrus_communis	pycom111g00380 pycom17g00410
rosa_chinensis	RchiOBHm_Chr2g0176291 RchiOBHm_Chr4g0429311
rosa_laevigata	RLG00000007082 RLG00000022400
rosa_multiflora	Rmu_co8294909.1_g000001 Rmu_sc0000054.1_g000005 Rmu_sc0000405.1_g000025
rosa_roxburghii	Rroxscaffold_2G00076600 Rroxscaffold_5G00370920
rosa_rugosa	Rorug02G0593000 Rorug04G0235100
rosa_samantha	Rh2AG671300 Rh2BG682800 Rh2CG645400 Rh2DG696200 Rh4BG296300 Rh4CG312000 Rh4DG293400
rosa_wichuraiana	Rw2G055060 Rw4G025180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	175
Acc36I	ACCTGC	1 cut(s)	213
AccB1I	GGYRCC	1 cut(s)	439
AccIII	TCCGGA	1 cut(s)	179
AciI	CCGC	1 cut(s)	443
AcoI	YGGCCR	2 cut(s)	380, 526
AfaI	GTAC	3 cut(s)	26, 35, 503
AfiI	CCNNNNNNNGG	1 cut(s)	332
AgsI	TTSAA	1 cut(s)	106
AjnI	CCWGG	1 cut(s)	110
AluBI	AGCT	6 cut(s)	5, 12, 69, 283, 365, 423
AluI	AGCT	6 cut(s)	5, 12, 69, 283, 365, 423
Aor13HI	TCCGGA	1 cut(s)	179
AoxI	GGCC	3 cut(s)	60, 380, 526
ApeKI	GCWGC	3 cut(s)	66, 185, 372
AspS9I	GGNCC	1 cut(s)	323
AsuHPI	GGTGA	2 cut(s)	424, 487
AvaII	GGWCC	1 cut(s)	323
BanI	GGYRCC	1 cut(s)	439
BbsI	GAAGAC	1 cut(s)	94
BbvI	GCAGC	3 cut(s)	78, 197, 384
BceAI	ACGGC	1 cut(s)	541
BciT130I	CCWGG	1 cut(s)	112
BclI	TGATCA	4 cut(s)	46, 664, 670, 676
BfmI	CTRYAG	1 cut(s)	206
BfuAI	ACCTGC	1 cut(s)	213
BisI	GCNGC	4 cut(s)	67, 186, 373, 443
BlsI	GCNGC	4 cut(s)	68, 187, 374, 444
Bme1390I	CCNGG	1 cut(s)	112
Bme18I	GGWCC	1 cut(s)	323
BmgT120I	GGNCC	1 cut(s)	323
BmiI	GGNNCC	2 cut(s)	116, 441
BmrFI	CCNGG	1 cut(s)	112
BmsI	GCATC	1 cut(s)	578
BpiI	GAAGAC	1 cut(s)	94
BpmI	CTGGAG	4 cut(s)	14, 55, 133, 491
BsaBI	GATNNNNATC	2 cut(s)	669, 675
BsaJI	CCNNGG	1 cut(s)	132
BsaWI	WCCGGW	3 cut(s)	179, 320, 404
Bsc4I	CCNNNNNNNGG	1 cut(s)	332
Bse118I	RCCGGY	1 cut(s)	378
Bse1I	ACTGG	3 cut(s)	31, 326, 470
Bse8I	GATNNNNATC	2 cut(s)	669, 675
BseAI	TCCGGA	1 cut(s)	179
BseBI	CCWGG	1 cut(s)	112
BseDI	CCNNGG	1 cut(s)	132
BseGI	GGATG	2 cut(s)	314, 569
BseJI	GATNNNNATC	2 cut(s)	669, 675
BseLI	CCNNNNNNNGG	1 cut(s)	332
BseMII	CTCAG	3 cut(s)	20, 486, 599
BseNI	ACTGG	3 cut(s)	31, 326, 470
BseRI	GAGGAG	1 cut(s)	275
BseXI	GCAGC	3 cut(s)	78, 197, 384
BsgI	GTGCAG	1 cut(s)	381
Bsh1285I	CGRYCG	1 cut(s)	379
BshFI	GGCC	3 cut(s)	62, 382, 528
BshNI	GGYRCC	1 cut(s)	439
BsiEI	CGRYCG	1 cut(s)	379
BsiSI	CCGG	5 cut(s)	180, 321, 333, 379, 405
BslFI	GGGAC	1 cut(s)	181
BslI	CCNNNNNNNGG	1 cut(s)	332
BsmFI	GGGAC	1 cut(s)	181
BsnI	GGCC	3 cut(s)	62, 382, 528
Bsp13I	TCCGGA	1 cut(s)	179
Bsp143I	GATC	4 cut(s)	46, 664, 670, 676
Bsp19I	CCATGG	1 cut(s)	132
BspACI	CCGC	1 cut(s)	443
BspANI	GGCC	3 cut(s)	62, 382, 528
BspCNI	CTCAG	3 cut(s)	19, 487, 598
BspEI	TCCGGA	1 cut(s)	179
BspHI	TCATGA	2 cut(s)	667, 673
BspLI	GGNNCC	2 cut(s)	116, 441
BspMAI	CTGCAG	1 cut(s)	210
BspMI	ACCTGC	1 cut(s)	213
BspT107I	GGYRCC	1 cut(s)	439
BsrFI	RCCGGY	1 cut(s)	378
BsrI	ACTGG	3 cut(s)	31, 326, 470
BssAI	RCCGGY	1 cut(s)	378
BssECI	CCNNGG	1 cut(s)	132
BssMI	GATC	4 cut(s)	46, 664, 670, 676
BssT1I	CCWWGG	1 cut(s)	132
Bst2UI	CCWGG	1 cut(s)	112
BstAPI	GCANNNNNTGC	1 cut(s)	455
BstC8I	GCNNGC	4 cut(s)	64, 210, 447, 648
BstDEI	CTNAG	3 cut(s)	6, 495, 585
BstDSI	CCRYGG	1 cut(s)	132
BstF5I	GGATG	2 cut(s)	314, 569
BstKTI	GATC	4 cut(s)	49, 667, 673, 679
BstMBI	GATC	4 cut(s)	46, 664, 670, 676
BstMCI	CGRYCG	1 cut(s)	379
BstMWI	GCNNNNNNNGC	3 cut(s)	72, 191, 455
BstNI	CCWGG	1 cut(s)	112
BstNSI	RCATGY	1 cut(s)	650
BstSCI	CCNGG	1 cut(s)	110
BstSFI	CTRYAG	1 cut(s)	206
BstV1I	GCAGC	3 cut(s)	78, 197, 384
BstV2I	GAAGAC	1 cut(s)	94
BsuRI	GGCC	3 cut(s)	62, 382, 528
BtgI	CCRYGG	1 cut(s)	132
BtsCI	GGATG	2 cut(s)	314, 569
BtsI	GCAGTG	1 cut(s)	393
BtsIMutI	CAGTG	2 cut(s)	393, 477
BveI	ACCTGC	1 cut(s)	213
Cac8I	GCNNGC	4 cut(s)	64, 210, 447, 648
CciI	TCATGA	2 cut(s)	667, 673
Cfr10I	RCCGGY	1 cut(s)	378
Cfr13I	GGNCC	1 cut(s)	323
CseI	GACGC	1 cut(s)	597
Csp6I	GTAC	3 cut(s)	25, 34, 502
CviAII	CATG	8 cut(s)	133, 189, 530, 544, 647, 662, 668, 674
CviQI	GTAC	3 cut(s)	25, 34, 502
DdeI	CTNAG	3 cut(s)	6, 495, 585
DpnI	GATC	4 cut(s)	48, 666, 672, 678
DpnII	GATC	4 cut(s)	46, 664, 670, 676
DrdI	GACNNNNNNGTC	1 cut(s)	175
DseDI	GACNNNNNNGTC	1 cut(s)	175
EaeI	YGGCCR	2 cut(s)	380, 526
Eco130I	CCWWGG	1 cut(s)	132
Eco47I	GGWCC	1 cut(s)	323
EcoRII	CCWGG	1 cut(s)	110
EcoT14I	CCWWGG	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	132
FaeI	CATG	8 cut(s)	136, 192, 533, 547, 650, 665, 671, 677
FaqI	GGGAC	1 cut(s)	181
FatI	CATG	8 cut(s)	132, 188, 529, 543, 646, 661, 667, 673
FauNDI	CATATG	1 cut(s)	637
FbaI	TGATCA	4 cut(s)	46, 664, 670, 676
Fnu4HI	GCNGC	4 cut(s)	67, 186, 373, 443
FokI	GGATG	2 cut(s)	301, 556
Fsp4HI	GCNGC	4 cut(s)	67, 186, 373, 443
GluI	GCNGC	4 cut(s)	67, 186, 373, 443
GsuI	CTGGAG	4 cut(s)	14, 55, 133, 491
HaeIII	GGCC	3 cut(s)	62, 382, 528
HapII	CCGG	5 cut(s)	180, 321, 333, 379, 405
HgaI	GACGC	1 cut(s)	597
Hin1II	CATG	8 cut(s)	136, 192, 533, 547, 650, 665, 671, 677
HinfI	GANTC	2 cut(s)	128, 487
HpaII	CCGG	5 cut(s)	180, 321, 333, 379, 405
HphI	GGTGA	2 cut(s)	424, 487
Hpy188I	TCNGA	3 cut(s)	9, 492, 588
Hpy188III	TCNNGA	5 cut(s)	180, 508, 612, 668, 674
HpyAV	CCTTC	2 cut(s)	411, 679
HpyCH4V	TGCA	4 cut(s)	208, 372, 398, 620
HpyF10VI	GCNNNNNNNGC	3 cut(s)	72, 191, 455
HpyF3I	CTNAG	3 cut(s)	6, 495, 585
Hsp92II	CATG	8 cut(s)	136, 192, 533, 547, 650, 665, 671, 677
Kpn2I	TCCGGA	1 cut(s)	179
Ksp22I	TGATCA	4 cut(s)	46, 664, 670, 676
Kzo9I	GATC	4 cut(s)	46, 664, 670, 676
LmnI	GCTCC	5 cut(s)	74, 114, 182, 288, 420
Lsp1109I	GCAGC	3 cut(s)	78, 197, 384
LweI	GCATC	1 cut(s)	578
MaeIII	GTNAC	3 cut(s)	412, 514, 692
MalI	GATC	4 cut(s)	48, 666, 672, 678
MboI	GATC	4 cut(s)	46, 664, 670, 676
MboII	GAAGA	2 cut(s)	94, 208
MluCI	AATT	1 cut(s)	556
MlyI	GAGTC	1 cut(s)	137
MmeI	TCCRAC	2 cut(s)	515, 649
MnlI	CCTC	8 cut(s)	38, 221, 232, 296, 474, 515, 639, 683
MroI	TCCGGA	1 cut(s)	179
MseI	TTAA	3 cut(s)	159, 221, 555
MslI	CAYNNNNRTG	3 cut(s)	651, 666, 672
MspA1I	CMGCKG	1 cut(s)	445
MspI	CCGG	5 cut(s)	180, 321, 333, 379, 405
MspR9I	CCNGG	1 cut(s)	112
MvaI	CCWGG	1 cut(s)	112
MwoI	GCNNNNNNNGC	3 cut(s)	72, 191, 455
NcoI	CCATGG	1 cut(s)	132
NdeI	CATATG	1 cut(s)	637
NdeII	GATC	4 cut(s)	46, 664, 670, 676
NlaIII	CATG	8 cut(s)	136, 192, 533, 547, 650, 665, 671, 677
NlaIV	GGNNCC	2 cut(s)	116, 441
NmeAIII	GCCGAG	1 cut(s)	151
NmuCI	GTSAC	3 cut(s)	412, 514, 692
NspI	RCATGY	1 cut(s)	650
PaeI	GCATGC	1 cut(s)	650
PagI	TCATGA	2 cut(s)	667, 673
PfeI	GAWTC	1 cut(s)	487
PfoI	TCCNGGA	1 cut(s)	110
PkrI	GCNGC	4 cut(s)	68, 187, 374, 444
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	110
PspGI	CCWGG	1 cut(s)	110
PspN4I	GGNNCC	2 cut(s)	116, 441
PspPI	GGNCC	1 cut(s)	323
PstI	CTGCAG	1 cut(s)	210
RsaI	GTAC	3 cut(s)	26, 35, 503
RsaNI	GTAC	3 cut(s)	25, 34, 502
RseI	CAYNNNNRTG	3 cut(s)	651, 666, 672
SaqAI	TTAA	3 cut(s)	159, 221, 555
SatI	GCNGC	4 cut(s)	67, 186, 373, 443
Sau3AI	GATC	4 cut(s)	46, 664, 670, 676
Sau96I	GGNCC	1 cut(s)	323
SbfI	CCTGCAGG	1 cut(s)	210
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	1 cut(s)	112
SdaI	CCTGCAGG	1 cut(s)	210
SfaNI	GCATC	1 cut(s)	578
SfcI	CTRYAG	1 cut(s)	206
SinI	GGWCC	1 cut(s)	323
SmiMI	CAYNNNNRTG	3 cut(s)	651, 666, 672
SphI	GCATGC	1 cut(s)	650
Sse8387I	CCTGCAGG	1 cut(s)	210
Sse9I	AATT	1 cut(s)	556
SsiI	CCGC	1 cut(s)	443
SspI	AATATT	1 cut(s)	355
StyD4I	CCNGG	1 cut(s)	110
StyI	CCWWGG	1 cut(s)	132
TasI	AATT	1 cut(s)	556
TauI	GCSGC	1 cut(s)	445
TfiI	GAWTC	1 cut(s)	487
Tru1I	TTAA	3 cut(s)	159, 221, 555
Tru9I	TTAA	3 cut(s)	159, 221, 555
TscAI	CASTG	2 cut(s)	400, 477
TseFI	GTSAC	3 cut(s)	412, 514, 692
TseI	GCWGC	3 cut(s)	66, 185, 372
Tsp45I	GTSAC	3 cut(s)	412, 514, 692
TspDTI	ATGAA	4 cut(s)	215, 532, 576, 654
TspGWI	ACGGA	1 cut(s)	12
TspRI	CASTG	2 cut(s)	400, 477
VpaK11BI	GGWCC	1 cut(s)	323
XceI	RCATGY	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.