Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004201

Physical Location & Seq

Genomic Coordinates Forward (+)

27985870 .. 27989471

Gene Structure 3602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G273600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGTTTACGCTCTGTTCACATCTCTAGCTCAATCTTCATTTTCAAGTTTCTCAGACTCACCCAAGCTAAGTTCCTCCAAATACCAAAGCCATGGCCTTTTTCTCAACGCCCACAAAAGCTTTAACGCCAAGTTTTCTCCACGCCAATCAACCCAGCTTACAAGGCTCAGAAATGTCAGAAGGTCGCCTTACATTTGCTTTTTCAATGGCGGAGGAAAGCCCAAAGGCGATTTACAAGAAAAGGAAACTGGAGAGCAGTGGCAGATTTTGAAGCGATGGGAGGTGCCCTGGGAATGGCAAACAGTCTCCTTAACATCATTTGCTTGTGGACTGAGTTTTGTTTTGACAGGATTGGTAGAGACAGCAGCTATACCGTATTTAGGACTAAATATTCAAGATTTGAGTATAGATGAAAAGGCAGAGATACTGTTTCTTGATCAAAGTATTACAACTGCAGCTGTACTTGCAGTTCTGTATACTGTTGCCAGCACTTTCCAACCGTTGCCTCAAGACGTTTATCGCTATGATTTGAAGGACCCTTTCAGTCTACAGAAGGGGTGGCTTTTGTGGGCAGGGATTGGTCTTGCTGGTGCAATAGTTGCCATCGCAGTGACAGGGGCTGTCGCGTCCTTGTTCAGGGGGGAGAGCCCAGAGAGAGAGAAGGACGCTCTAGTTAGCTTGCTTCCACTGATTGGATCTTCAAGTGTCAGCACTGCTTGCTTGCTAGGCATCACTGGAGTTTTGGCTCCAATTCTTGAGGAGACTGTATTTCGGGGTTTTTTTATGGTCTCCATGACGAAGTGGGTACCTACACCAGTTGCTATTGGAATAAGTGCAGCTGTATTTGCACTTGCACATCTCACTCCCGGAGAGTTTCCACAGCTGTTTGTGCTAGGCTCTGCTCTGGGATTGTCATATGCTCAAACTCGCAACCTTTTAACCCCCATCACAATACATGCTCTCTGGAACTCAGGAGTGATATTGCTTCTAACCTTCCTTCAGCTACAAGGGTACGATATCAAGGAATTGTTGCAGACAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abi

Protein Analysis

348

Amino Acids

37.92

Weight (kDa)

6.91

Isoelectric Point (pI)

50.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14270 AT1G14270 AT1G14270 AT1G14270
fragaria_vesca	FvH4_4g31430 FvH4_4g31430 FvH4_4g31430
malus_domestica	MD13G1072600.v1.1 MD16G1073400.v1.1
prunus_persica	Prupe.1G273600_v2.0.a1 Prupe.1G273600_v2.0.a1
pyrus_communis	pycom13g06510 pycom16g06350
rosa_chinensis	RchiOBHm_Chr4g0413061 RchiOBHm_Chr4g0439911
rosa_laevigata	RLG00000006227
rosa_multiflora	Rmu_sc0004020.1_g000003 Rmu_sc0022459.1_g000004
rosa_roxburghii	Rroxscaffold_1G00051590 Rroxscaffold_5G00380860 Rroxscaffold_7G00174140
rosa_rugosa	Rorug04G0322300
rosa_samantha	Rh1CG266600 Rh3CG366200 Rh4AG122400 Rh4AG373300 Rh4BG385600 Rh4CG400100 Rh4DG379900 Rh5AG410800 Rh7AG445800
rosa_wichuraiana	Rw4G031920 Rw7G025690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	805
AccB1I	GGYRCC	2 cut(s)	283, 805
AccB7I	CCANNNNNTGG	1 cut(s)	692
AccI	GTMKAC	2 cut(s)	476, 547
AccII	CGCG	1 cut(s)	626
AciI	CCGC	1 cut(s)	210
AclWI	GGATC	1 cut(s)	703
AcuI	CTGAAG	1 cut(s)	983
AfaI	GTAC	3 cut(s)	462, 807, 1013
AfiI	CCNNNNNNNGG	4 cut(s)	294, 380, 636, 692
AgsI	TTSAA	6 cut(s)	45, 205, 271, 395, 532, 702
AjnI	CCWGG	1 cut(s)	287
Alw26I	GTCTC	4 cut(s)	310, 353, 755, 793
AlwI	GGATC	1 cut(s)	703
AlwNI	CAGNNNCTG	1 cut(s)	620
AoxI	GGCC	1 cut(s)	94
ApeKI	GCWGC	3 cut(s)	365, 455, 836
Asp718I	GGTACC	1 cut(s)	805
AspS9I	GGNCC	1 cut(s)	535
AsuC2I	CCSGG	1 cut(s)	867
AsuHPI	GGTGA	1 cut(s)	51
AvaII	GGWCC	1 cut(s)	535
BaeGI	GKGCMC	1 cut(s)	288
BanI	GGYRCC	2 cut(s)	283, 805
BanII	GRGCYC	1 cut(s)	650
BbvI	GCAGC	3 cut(s)	377, 467, 848
BccI	CCATC	3 cut(s)	270, 611, 953
BciT130I	CCWGG	1 cut(s)	289
BclI	TGATCA	1 cut(s)	436
BcnI	CCSGG	1 cut(s)	867
BcoDI	GTCTC	4 cut(s)	310, 353, 755, 793
BfaI	CTAG	4 cut(s)	26, 671, 725, 893
BfmI	CTRYAG	2 cut(s)	453, 548
BisI	GCNGC	3 cut(s)	366, 456, 837
BlsI	GCNGC	3 cut(s)	367, 457, 838
Bme1390I	CCNGG	2 cut(s)	289, 867
Bme18I	GGWCC	1 cut(s)	535
BmgT120I	GGNCC	1 cut(s)	535
BmiI	GGNNCC	4 cut(s)	285, 537, 747, 807
BmrFI	CCNGG	2 cut(s)	289, 867
BmsI	GCATC	1 cut(s)	738
BpmI	CTGGAG	2 cut(s)	270, 756
BpuEI	CTTGAG	2 cut(s)	492, 776
BpuMI	CCSGG	1 cut(s)	867
BsaI	GGTCTC	1 cut(s)	793
BsaJI	CCNNGG	3 cut(s)	91, 287, 288
Bsc4I	CCNNNNNNNGG	4 cut(s)	294, 380, 636, 692
Bse1I	ACTGG	3 cut(s)	253, 739, 815
BseBI	CCWGG	1 cut(s)	289
BseDI	CCNNGG	3 cut(s)	91, 287, 288
BseLI	CCNNNNNNNGG	4 cut(s)	294, 380, 636, 692
BseMII	CTCAG	4 cut(s)	66, 181, 323, 984
BseNI	ACTGG	3 cut(s)	253, 739, 815
BseRI	GAGGAG	1 cut(s)	773
BseSI	GKGCMC	1 cut(s)	288
BseXI	GCAGC	3 cut(s)	377, 467, 848
BseYI	CCCAGC	1 cut(s)	153
BsgI	GTGCAG	1 cut(s)	855
Bsh1236I	CGCG	1 cut(s)	626
BshFI	GGCC	1 cut(s)	96
BshNI	GGYRCC	2 cut(s)	283, 805
BsiSI	CCGG	1 cut(s)	867
BslI	CCNNNNNNNGG	4 cut(s)	294, 380, 636, 692
BsmAI	GTCTC	4 cut(s)	310, 353, 755, 793
BsnI	GGCC	1 cut(s)	96
Bso31I	GGTCTC	1 cut(s)	793
Bsp1286I	GDGCHC	2 cut(s)	288, 650
Bsp143I	GATC	2 cut(s)	436, 695
Bsp19I	CCATGG	1 cut(s)	91
BspACI	CCGC	1 cut(s)	210
BspANI	GGCC	1 cut(s)	96
BspCNI	CTCAG	4 cut(s)	65, 180, 324, 983
BspFNI	CGCG	1 cut(s)	626
BspLI	GGNNCC	4 cut(s)	285, 537, 747, 807
BspMAI	CTGCAG	1 cut(s)	457
BspPI	GGATC	1 cut(s)	703
BspT107I	GGYRCC	2 cut(s)	283, 805
BspTNI	GGTCTC	1 cut(s)	793
BsrI	ACTGG	3 cut(s)	253, 739, 815
BssECI	CCNNGG	3 cut(s)	91, 287, 288
BssMI	GATC	2 cut(s)	436, 695
BssNAI	GTATAC	1 cut(s)	477
BssT1I	CCWWGG	1 cut(s)	91
Bst1107I	GTATAC	1 cut(s)	477
Bst2UI	CCWGG	1 cut(s)	289
Bst4CI	ACNGT	6 cut(s)	304, 375, 429, 481, 501, 766
BstAPI	GCANNNNNTGC	2 cut(s)	599, 717
BstC8I	GCNNGC	4 cut(s)	487, 680, 718, 722
BstDEI	CTNAG	5 cut(s)	52, 68, 167, 332, 970
BstDSI	CCRYGG	1 cut(s)	91
BstENI	CCTNNNNNAGG	1 cut(s)	634
BstFNI	CGCG	1 cut(s)	626
BstKTI	GATC	2 cut(s)	439, 698
BstMAI	GTCTC	4 cut(s)	310, 353, 755, 793
BstMBI	GATC	2 cut(s)	436, 695
BstMWI	GCNNNNNNNGC	7 cut(s)	163, 464, 599, 717, 726, 845, 889
BstNI	CCWGG	1 cut(s)	289
BstNSI	RCATGY	1 cut(s)	959
BstSCI	CCNGG	2 cut(s)	287, 865
BstSFI	CTRYAG	2 cut(s)	453, 548
BstSLI	GKGCMC	1 cut(s)	288
BstUI	CGCG	1 cut(s)	626
BstV1I	GCAGC	3 cut(s)	377, 467, 848
BstX2I	RGATCY	1 cut(s)	695
BstXI	CCANNNNNNTGG	1 cut(s)	92
BstYI	RGATCY	1 cut(s)	695
BstZ17I	GTATAC	1 cut(s)	477
BsuRI	GGCC	1 cut(s)	96
BtgI	CCRYGG	1 cut(s)	91
BtgZI	GCGATG	2 cut(s)	289, 589
BtsI	GCAGTG	3 cut(s)	263, 615, 711
BtsIMutI	CAGTG	5 cut(s)	263, 615, 686, 711, 732
Cac8I	GCNNGC	4 cut(s)	487, 680, 718, 722
CaiI	CAGNNNCTG	1 cut(s)	620
Cfr13I	GGNCC	1 cut(s)	535
CseI	GACGC	2 cut(s)	615, 674
Csp6I	GTAC	3 cut(s)	461, 806, 1012
CviAII	CATG	3 cut(s)	92, 793, 956
CviQI	GTAC	3 cut(s)	461, 806, 1012
DdeI	CTNAG	5 cut(s)	52, 68, 167, 332, 970
DpnI	GATC	2 cut(s)	438, 697
DpnII	GATC	2 cut(s)	436, 695
EciI	GGCGGA	1 cut(s)	225
Eco130I	CCWWGG	1 cut(s)	91
Eco24I	GRGCYC	1 cut(s)	650
Eco31I	GGTCTC	1 cut(s)	793
Eco32I	GATATC	1 cut(s)	1018
Eco47I	GGWCC	1 cut(s)	535
Eco57I	CTGAAG	1 cut(s)	983
EcoNI	CCTNNNNNAGG	1 cut(s)	634
EcoO109I	RGGNCCY	1 cut(s)	535
EcoRII	CCWGG	1 cut(s)	287
EcoRV	GATATC	1 cut(s)	1018
EcoT14I	CCWWGG	1 cut(s)	91
EcoT38I	GRGCYC	1 cut(s)	650
ErhI	CCWWGG	1 cut(s)	91
FaeI	CATG	3 cut(s)	95, 796, 959
FalI	AAGNNNNNCTT	2 cut(s)	172, 204
FatI	CATG	3 cut(s)	91, 792, 955
FauNDI	CATATG	1 cut(s)	916
FbaI	TGATCA	1 cut(s)	436
FblI	GTMKAC	2 cut(s)	476, 547
Fnu4HI	GCNGC	3 cut(s)	366, 456, 837
FriOI	GRGCYC	1 cut(s)	650
Fsp4HI	GCNGC	3 cut(s)	366, 456, 837
FspBI	CTAG	4 cut(s)	26, 671, 725, 893
GluI	GCNGC	3 cut(s)	366, 456, 837
GsaI	CCCAGC	1 cut(s)	157
GsuI	CTGGAG	2 cut(s)	270, 756
HaeIII	GGCC	1 cut(s)	96
HapII	CCGG	1 cut(s)	867
HgaI	GACGC	2 cut(s)	615, 674
Hin1II	CATG	3 cut(s)	95, 796, 959
HindIII	AAGCTT	1 cut(s)	118
HinfI	GANTC	1 cut(s)	56
HpaII	CCGG	1 cut(s)	867
HphI	GGTGA	1 cut(s)	51
Hpy166II	GTNNAC	5 cut(s)	7, 18, 329, 477, 548
Hpy188I	TCNGA	3 cut(s)	55, 170, 179
Hpy188III	TCNNGA	6 cut(s)	395, 434, 509, 755, 964, 972
Hpy8I	GTNNAC	5 cut(s)	7, 18, 329, 477, 548
HpyAV	CCTTC	6 cut(s)	174, 526, 547, 655, 1003, 1007
HpyCH4III	ACNGT	6 cut(s)	304, 375, 429, 481, 501, 766
HpyCH4IV	ACGT	1 cut(s)	513
HpyCH4V	TGCA	7 cut(s)	455, 467, 593, 836, 848, 854, 1033
HpyF10VI	GCNNNNNNNGC	7 cut(s)	163, 464, 599, 717, 726, 845, 889
HpyF3I	CTNAG	5 cut(s)	52, 68, 167, 332, 970
HpySE526I	ACGT	1 cut(s)	513
Hsp92II	CATG	3 cut(s)	95, 796, 959
KpnI	GGTACC	1 cut(s)	809
Ksp22I	TGATCA	1 cut(s)	436
Kzo9I	GATC	2 cut(s)	436, 695
LmnI	GCTCC	1 cut(s)	751
Lsp1109I	GCAGC	3 cut(s)	377, 467, 848
LweI	GCATC	1 cut(s)	738
MaeI	CTAG	4 cut(s)	26, 671, 725, 893
MaeII	ACGT	1 cut(s)	513
MaeIII	GTNAC	1 cut(s)	610
MalI	GATC	2 cut(s)	438, 697
MboI	GATC	2 cut(s)	436, 695
MboII	GAAGA	2 cut(s)	27, 690
MflI	RGATCY	1 cut(s)	695
MhlI	GDGCHC	2 cut(s)	288, 650
MluCI	AATT	2 cut(s)	750, 1025
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	1 cut(s)	520
MnlI	CCTC	5 cut(s)	85, 206, 274, 516, 751
MseI	TTAA	3 cut(s)	123, 311, 938
MslI	CAYNNNNRTG	1 cut(s)	608
MspA1I	CMGCKG	3 cut(s)	458, 839, 883
MspI	CCGG	1 cut(s)	867
MspR9I	CCNGG	2 cut(s)	289, 867
MvaI	CCWGG	1 cut(s)	289
MvnI	CGCG	1 cut(s)	626
MwoI	GCNNNNNNNGC	7 cut(s)	163, 464, 599, 717, 726, 845, 889
NciI	CCSGG	1 cut(s)	867
NcoI	CCATGG	1 cut(s)	91
NdeI	CATATG	1 cut(s)	916
NdeII	GATC	2 cut(s)	436, 695
NlaIII	CATG	3 cut(s)	95, 796, 959
NlaIV	GGNNCC	4 cut(s)	285, 537, 747, 807
NmuCI	GTSAC	1 cut(s)	610
NspI	RCATGY	1 cut(s)	959
PasI	CCCWGGG	1 cut(s)	288
PflMI	CCANNNNNTGG	1 cut(s)	692
PfoI	TCCNGGA	1 cut(s)	865
PkrI	GCNGC	3 cut(s)	367, 457, 838
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
PpuMI	RGGWCCY	1 cut(s)	535
Psp5II	RGGWCCY	1 cut(s)	535
Psp6I	CCWGG	1 cut(s)	287
PspFI	CCCAGC	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	287
PspN4I	GGNNCC	4 cut(s)	285, 537, 747, 807
PspPI	GGNCC	1 cut(s)	535
PspPPI	RGGWCCY	1 cut(s)	535
PsrI	GAACNNNNNNTAC	2 cut(s)	453, 485
PstI	CTGCAG	1 cut(s)	457
PstNI	CAGNNNCTG	1 cut(s)	620
PsuI	RGATCY	1 cut(s)	695
PvuII	CAGCTG	3 cut(s)	458, 839, 883
RsaI	GTAC	3 cut(s)	462, 807, 1013
RsaNI	GTAC	3 cut(s)	461, 806, 1012
RseI	CAYNNNNRTG	1 cut(s)	608
SaqAI	TTAA	3 cut(s)	123, 311, 938
SatI	GCNGC	3 cut(s)	366, 456, 837
Sau3AI	GATC	2 cut(s)	436, 695
Sau96I	GGNCC	1 cut(s)	535
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	2 cut(s)	289, 867
SduI	GDGCHC	2 cut(s)	288, 650
SfaNI	GCATC	1 cut(s)	738
SfcI	CTRYAG	2 cut(s)	453, 548
SinI	GGWCC	1 cut(s)	535
SmiMI	CAYNNNNRTG	1 cut(s)	608
SmlI	CTYRAG	2 cut(s)	507, 755
SmoI	CTYRAG	2 cut(s)	507, 755
Sse9I	AATT	2 cut(s)	750, 1025
SsiI	CCGC	1 cut(s)	210
SspI	AATATT	1 cut(s)	391
SspMI	CTAG	4 cut(s)	26, 671, 725, 893
StyD4I	CCNGG	2 cut(s)	287, 865
StyI	CCWWGG	1 cut(s)	91
TaaI	ACNGT	6 cut(s)	304, 375, 429, 481, 501, 766
TaiI	ACGT	1 cut(s)	516
TasI	AATT	2 cut(s)	750, 1025
TatI	WGTACW	1 cut(s)	460
Tru1I	TTAA	3 cut(s)	123, 311, 938
Tru9I	TTAA	3 cut(s)	123, 311, 938
TscAI	CASTG	5 cut(s)	263, 615, 693, 718, 739
TseFI	GTSAC	1 cut(s)	610
TseI	GCWGC	3 cut(s)	365, 455, 836
Tsp45I	GTSAC	1 cut(s)	610
TspDTI	ATGAA	2 cut(s)	27, 426
TspRI	CASTG	5 cut(s)	263, 615, 693, 718, 739
Van91I	CCANNNNNTGG	1 cut(s)	692
VpaK11BI	GGWCC	1 cut(s)	535
XagI	CCTNNNNNAGG	1 cut(s)	634
XceI	RCATGY	1 cut(s)	959
XmiI	GTMKAC	2 cut(s)	476, 547
XspI	CTAG	4 cut(s)	26, 671, 725, 893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.