Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004201

Physical Location & Seq

Genomic Coordinates Forward (+)

72249863 .. 72252242

Gene Structure 2380 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00051590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGTGCATCCCATCACTACCTAGTATGGTTTTGCACAGAACAGGATCTTGTGTTAGGATATCTTCAAATGCGAAGTCCCTTATCCGGCGTGCCGAGAGGCTTTTCTTCCCGAATGGTGAACATGATCTCTCAGCATTTCTACCGGTGGATTTGGGAATAGTCAAGTATCCAACTTACAAGAAAATGAAGGGGCTTGCAAATTTTAAAGAGGTGGGATGTGCCTTGGGAATGGCAAACAGTGTCATTGACATCACTGGCTTGTGGACTGAGGTGAGATTGGTAGAGGCAGCAGTTGTACCCTATTTAGGATTGAGCATTCAGGATTTGAGTCTAGATGAGAAGGCAGAGTTTCTGTTGGTTGCTCAAGGTGTTACGACTGCAGCCATACTTGGAGTTCTGTATACCGTTGCCGGCAAATTCCAACCGCTGCCTCAAGATATTTATCGCTATGATTGGAGGGAACCTTTCAGTCTACCGAGAGGGTGGCTTTTGTGGGCTAGGATTGGTCTTGTTGGTGCTGTAGTTGCTGTGGCATTGACAGGGGCTGCCACACTAACAGAAACTGTCATCTTGTGGCTTTCCGAAGATCAAAGCTTTTGGGATGATATTGAGGATGGGCCAAGGCCTTCGGGTCCTTTTGGCTTACAACAGGCTTTAGCTTCTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abi

Protein Analysis

222

Amino Acids

24.25

Weight (kDa)

5.44

Isoelectric Point (pI)

39.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14270 AT1G14270 AT1G14270 AT1G14270
fragaria_vesca	FvH4_4g31430 FvH4_4g31430 FvH4_4g31430
malus_domestica	MD13G1072600.v1.1 MD16G1073400.v1.1
prunus_persica	Prupe.1G273600_v2.0.a1 Prupe.1G273600_v2.0.a1
pyrus_communis	pycom13g06510 pycom16g06350
rosa_chinensis	RchiOBHm_Chr4g0413061 RchiOBHm_Chr4g0439911
rosa_laevigata	RLG00000006227
rosa_multiflora	Rmu_sc0004020.1_g000003 Rmu_sc0022459.1_g000004
rosa_roxburghii	Rroxscaffold_1G00051590 Rroxscaffold_5G00380860 Rroxscaffold_7G00174140
rosa_rugosa	Rorug04G0322300
rosa_samantha	Rh1CG266600 Rh3CG366200 Rh4AG122400 Rh4AG373300 Rh4BG385600 Rh4CG400100 Rh4DG379900 Rh5AG410800 Rh7AG445800
rosa_wichuraiana	Rw4G031920 Rw7G025690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	401, 472
AciI	CCGC	1 cut(s)	425
AclWI	GGATC	1 cut(s)	52
AcsI	RAATTY	2 cut(s)	199, 416
AfaI	GTAC	1 cut(s)	297
AfiI	CCNNNNNNNGG	2 cut(s)	84, 305
AgeI	ACCGGT	1 cut(s)	142
AgsI	TTSAA	1 cut(s)	66
AluBI	AGCT	3 cut(s)	594, 659, 666
AluI	AGCT	3 cut(s)	594, 659, 666
AlwI	GGATC	1 cut(s)	52
AlwNI	CAGNNNCTG	2 cut(s)	545, 563
AoxI	GGCC	2 cut(s)	617, 623
ApeKI	GCWGC	4 cut(s)	287, 380, 427, 545
ApoI	RAATTY	2 cut(s)	199, 416
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
AsiGI	ACCGGT	1 cut(s)	142
AspS9I	GGNCC	2 cut(s)	617, 632
AsuHPI	GGTGA	2 cut(s)	128, 283
AvaII	GGWCC	1 cut(s)	632
BbvI	GCAGC	4 cut(s)	299, 392, 414, 532
BccI	CCATC	2 cut(s)	19, 608
BciVI	GTATCC	1 cut(s)	177
BfaI	CTAG	5 cut(s)	21, 332, 498, 663, 667
BfmI	CTRYAG	2 cut(s)	378, 519
BfuI	GTATCC	1 cut(s)	177
BisI	GCNGC	4 cut(s)	288, 381, 428, 546
BlsI	GCNGC	4 cut(s)	289, 382, 429, 547
Bme18I	GGWCC	1 cut(s)	632
BmgT120I	GGNCC	2 cut(s)	617, 632
BmiI	GGNNCC	2 cut(s)	462, 633
BmsI	GCATC	1 cut(s)	15
BpuEI	CTTGAG	2 cut(s)	348, 417
BsaBI	GATNNNNATC	1 cut(s)	441
BsaJI	CCNNGG	2 cut(s)	222, 620
BsaWI	WCCGGW	1 cut(s)	142
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 305
Bse118I	RCCGGY	2 cut(s)	142, 410
Bse1I	ACTGG	1 cut(s)	259
Bse8I	GATNNNNATC	1 cut(s)	441
BseDI	CCNNGG	2 cut(s)	222, 620
BseGI	GGATG	4 cut(s)	6, 221, 607, 619
BseJI	GATNNNNATC	1 cut(s)	441
BseLI	CCNNNNNNNGG	2 cut(s)	84, 305
BseMII	CTCAG	2 cut(s)	144, 258
BseNI	ACTGG	1 cut(s)	259
BseXI	GCAGC	4 cut(s)	299, 392, 414, 532
BshFI	GGCC	2 cut(s)	619, 625
BshTI	ACCGGT	1 cut(s)	142
BsiSI	CCGG	3 cut(s)	85, 143, 411
BslFI	GGGAC	1 cut(s)	61
BslI	CCNNNNNNNGG	2 cut(s)	84, 305
BsmFI	GGGAC	1 cut(s)	61
BsmI	GAATGC	1 cut(s)	315
BsnI	GGCC	2 cut(s)	619, 625
Bsp143I	GATC	3 cut(s)	44, 124, 586
BspACI	CCGC	1 cut(s)	425
BspANI	GGCC	2 cut(s)	619, 625
BspCNI	CTCAG	2 cut(s)	143, 259
BspLI	GGNNCC	2 cut(s)	462, 633
BspMAI	CTGCAG	1 cut(s)	382
BspPI	GGATC	1 cut(s)	52
BsrFI	RCCGGY	2 cut(s)	142, 410
BsrI	ACTGG	1 cut(s)	259
BssAI	RCCGGY	2 cut(s)	142, 410
BssECI	CCNNGG	2 cut(s)	222, 620
BssMI	GATC	3 cut(s)	44, 124, 586
BssNAI	GTATAC	1 cut(s)	402
BssT1I	CCWWGG	2 cut(s)	222, 620
Bst1107I	GTATAC	1 cut(s)	402
Bst4CI	ACNGT	3 cut(s)	239, 406, 565
BstC8I	GCNNGC	3 cut(s)	90, 195, 412
BstDEI	CTNAG	2 cut(s)	130, 267
BstF5I	GGATG	4 cut(s)	6, 221, 607, 619
BstKTI	GATC	3 cut(s)	47, 127, 589
BstMBI	GATC	3 cut(s)	44, 124, 586
BstMWI	GCNNNNNNNGC	1 cut(s)	524
BstSFI	CTRYAG	2 cut(s)	378, 519
BstV1I	GCAGC	4 cut(s)	299, 392, 414, 532
BstX2I	RGATCY	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	44
BstZ17I	GTATAC	1 cut(s)	402
BsuI	GTATCC	1 cut(s)	177
BsuRI	GGCC	2 cut(s)	619, 625
BtsCI	GGATG	4 cut(s)	6, 221, 607, 619
BtsIMutI	CAGTG	2 cut(s)	244, 252
Cac8I	GCNNGC	3 cut(s)	90, 195, 412
CaiI	CAGNNNCTG	2 cut(s)	545, 563
Cfr10I	RCCGGY	2 cut(s)	142, 410
Cfr13I	GGNCC	2 cut(s)	617, 632
Csp6I	GTAC	1 cut(s)	296
CspAI	ACCGGT	1 cut(s)	142
CviAII	CATG	1 cut(s)	122
CviQI	GTAC	1 cut(s)	296
DdeI	CTNAG	2 cut(s)	130, 267
DpnI	GATC	3 cut(s)	46, 126, 588
DpnII	GATC	3 cut(s)	44, 124, 586
DraI	TTTAAA	1 cut(s)	205
Eco130I	CCWWGG	2 cut(s)	222, 620
Eco147I	AGGCCT	1 cut(s)	625
Eco32I	GATATC	1 cut(s)	60
Eco47I	GGWCC	1 cut(s)	632
EcoO109I	RGGNCCY	1 cut(s)	632
EcoRV	GATATC	1 cut(s)	60
EcoT14I	CCWWGG	2 cut(s)	222, 620
ErhI	CCWWGG	2 cut(s)	222, 620
FaeI	CATG	1 cut(s)	125
FaiI	YATR	5 cut(s)	26, 123, 386, 402, 450
FaqI	GGGAC	1 cut(s)	61
FatI	CATG	1 cut(s)	121
FblI	GTMKAC	2 cut(s)	401, 472
Fnu4HI	GCNGC	4 cut(s)	288, 381, 428, 546
FokI	GGATG	3 cut(s)	228, 614, 626
Fsp4HI	GCNGC	4 cut(s)	288, 381, 428, 546
FspBI	CTAG	5 cut(s)	21, 332, 498, 663, 667
GluI	GCNGC	4 cut(s)	288, 381, 428, 546
HaeIII	GGCC	2 cut(s)	619, 625
HapII	CCGG	3 cut(s)	85, 143, 411
Hin1II	CATG	1 cut(s)	125
HindIII	AAGCTT	1 cut(s)	592
HinfI	GANTC	1 cut(s)	328
HpaII	CCGG	3 cut(s)	85, 143, 411
HphI	GGTGA	2 cut(s)	128, 283
Hpy166II	GTNNAC	4 cut(s)	119, 264, 402, 473
Hpy188I	TCNGA	1 cut(s)	583
Hpy188III	TCNNGA	4 cut(s)	109, 320, 332, 434
Hpy8I	GTNNAC	4 cut(s)	119, 264, 402, 473
HpyAV	CCTTC	3 cut(s)	181, 334, 636
HpyCH4III	ACNGT	3 cut(s)	239, 406, 565
HpyCH4V	TGCA	4 cut(s)	6, 34, 197, 380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	524
HpyF3I	CTNAG	2 cut(s)	130, 267
Hsp92II	CATG	1 cut(s)	125
KroI	GCCGGC	1 cut(s)	410
KroNI	GCCGGC	1 cut(s)	412
Kzo9I	GATC	3 cut(s)	44, 124, 586
LpnPI	CCDG	8 cut(s)	27, 98, 156, 240, 305, 424, 525, 635
Lsp1109I	GCAGC	4 cut(s)	299, 392, 414, 532
LweI	GCATC	1 cut(s)	15
MaeI	CTAG	5 cut(s)	21, 332, 498, 663, 667
MaeIII	GTNAC	1 cut(s)	370
MalI	GATC	3 cut(s)	46, 126, 588
MboI	GATC	3 cut(s)	44, 124, 586
MboII	GAAGA	3 cut(s)	54, 97, 596
MflI	RGATCY	1 cut(s)	44
MluCI	AATT	2 cut(s)	199, 416
MlyI	GAGTC	1 cut(s)	337
MmeI	TCCRAC	2 cut(s)	194, 445
MnlI	CCTC	8 cut(s)	90, 202, 262, 277, 441, 450, 473, 604
MroNI	GCCGGC	1 cut(s)	410
MseI	TTAA	1 cut(s)	204
MspA1I	CMGCKG	1 cut(s)	427
MspI	CCGG	3 cut(s)	85, 143, 411
Mva1269I	GAATGC	1 cut(s)	315
MwoI	GCNNNNNNNGC	1 cut(s)	524
NaeI	GCCGGC	1 cut(s)	412
NdeII	GATC	3 cut(s)	44, 124, 586
NgoMIV	GCCGGC	1 cut(s)	410
NlaIII	CATG	1 cut(s)	125
NlaIV	GGNNCC	2 cut(s)	462, 633
NmeAIII	GCCGAG	1 cut(s)	118
PceI	AGGCCT	1 cut(s)	625
PctI	GAATGC	1 cut(s)	315
PdiI	GCCGGC	1 cut(s)	412
PinAI	ACCGGT	1 cut(s)	142
PkrI	GCNGC	4 cut(s)	289, 382, 429, 547
PleI	GAGTC	1 cut(s)	336
PpsI	GAGTC	1 cut(s)	336
PpuMI	RGGWCCY	1 cut(s)	632
Psp5II	RGGWCCY	1 cut(s)	632
PspN4I	GGNNCC	2 cut(s)	462, 633
PspPI	GGNCC	2 cut(s)	617, 632
PspPPI	RGGWCCY	1 cut(s)	632
PstI	CTGCAG	1 cut(s)	382
PstNI	CAGNNNCTG	2 cut(s)	545, 563
PsuI	RGATCY	1 cut(s)	44
RsaI	GTAC	1 cut(s)	297
RsaNI	GTAC	1 cut(s)	296
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	4 cut(s)	288, 381, 428, 546
Sau3AI	GATC	3 cut(s)	44, 124, 586
Sau96I	GGNCC	2 cut(s)	617, 632
SchI	GAGTC	1 cut(s)	337
SetI	ASST	8 cut(s)	22, 213, 273, 370, 466, 596, 661, 668
SfaNI	GCATC	1 cut(s)	15
SfcI	CTRYAG	2 cut(s)	378, 519
SinI	GGWCC	1 cut(s)	632
SmlI	CTYRAG	2 cut(s)	363, 432
SmoI	CTYRAG	2 cut(s)	363, 432
Sse9I	AATT	2 cut(s)	199, 416
SseBI	AGGCCT	1 cut(s)	625
SsiI	CCGC	1 cut(s)	425
SspMI	CTAG	5 cut(s)	21, 332, 498, 663, 667
StuI	AGGCCT	1 cut(s)	625
StyI	CCWWGG	2 cut(s)	222, 620
TaaI	ACNGT	3 cut(s)	239, 406, 565
TasI	AATT	2 cut(s)	199, 416
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TscAI	CASTG	2 cut(s)	244, 259
TseI	GCWGC	4 cut(s)	287, 380, 427, 545
TspDTI	ATGAA	1 cut(s)	200
TspRI	CASTG	2 cut(s)	244, 259
VpaK11BI	GGWCC	1 cut(s)	632
XapI	RAATTY	2 cut(s)	199, 416
XbaI	TCTAGA	1 cut(s)	331
XmiI	GTMKAC	2 cut(s)	401, 472
XspI	CTAG	5 cut(s)	21, 332, 498, 663, 667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.