Rroxscaffold_7G00174140

CAAX protease self-immunity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0004201
Physical Location & Seq
Reverse (-)
13899899 .. 13902721
2823 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00174140.1

Sequence Viewer

Length: 438 bp
ATGCATCACAACATGCCATTTTTCTCTTTGCCAAGATCCCGCAGATATGGCAGAACTTTTCTAGCAGCCGTTGCACAGAATTGTTTGATGTTTGTTCCCAAAAATAATAAGGAAGATGTGGCGTTTTGGATTCCCTTTAGAATGATGCATCTTCTTTTTGCATCTCAATACTGGCAACCCCAGAAAGAGATGTTTCAAGATGATTGGAGGGAACCTTTCCGTCTACCGAGAGGGTGGCTTTTGTGGGCTGGGATTGGTCTTGTTGGTGCTGTAGTTGCTGTGGCATTGACAGGGGCTGCCACGTCCTTTTTCAGTGGGCAAACCCCAGAAAGAGAGAAACTGTCATCTTGTGGCTTTCCGAAGATCAAAGCTTTTGGGATGATATTGAGGATGGGCCAAGGCCTTTGGGTCCTTTTGGCTTACAACAGTGGGCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abi

Protein Analysis

145

Amino Acids

16.68

Weight (kDa)

10.28

Isoelectric Point (pI)

53.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 223
AciI CCGC 2 cut(s) 40, 433
AclWI GGATC 1 cut(s) 30
AgsI TTSAA 1 cut(s) 197
AjiI CACGTC 1 cut(s) 303
AluBI AGCT 1 cut(s) 371
AluI AGCT 1 cut(s) 371
AlwI GGATC 1 cut(s) 30
AlwNI CAGNNNCTG 1 cut(s) 296
AoxI GGCC 2 cut(s) 394, 400
ApeKI GCWGC 2 cut(s) 65, 296
AspS9I GGNCC 2 cut(s) 394, 409
AvaII GGWCC 1 cut(s) 409
BbvI GCAGC 2 cut(s) 77, 283
BccI CCATC 1 cut(s) 385
BceAI ACGGC 1 cut(s) 53
BfaI CTAG 1 cut(s) 62
BfmI CTRYAG 1 cut(s) 270
BisI GCNGC 2 cut(s) 66, 297
BlsI GCNGC 2 cut(s) 67, 298
Bme18I GGWCC 1 cut(s) 409
BmgBI CACGTC 1 cut(s) 303
BmgT120I GGNCC 2 cut(s) 394, 409
BmiI GGNNCC 2 cut(s) 213, 410
BmsI GCATC 4 cut(s) 13, 135, 157, 170
BsaJI CCNNGG 1 cut(s) 397
Bse1I ACTGG 1 cut(s) 176
BseDI CCNNGG 1 cut(s) 397
BseGI GGATG 2 cut(s) 384, 396
BseNI ACTGG 1 cut(s) 176
BseXI GCAGC 2 cut(s) 77, 283
BseYI CCCAGC 1 cut(s) 248
BshFI GGCC 2 cut(s) 396, 402
BsnI GGCC 2 cut(s) 396, 402
Bsp143I GATC 2 cut(s) 35, 363
BspACI CCGC 2 cut(s) 40, 433
BspANI GGCC 2 cut(s) 396, 402
BspLI GGNNCC 2 cut(s) 213, 410
BspPI GGATC 1 cut(s) 30
BsrI ACTGG 1 cut(s) 176
BssECI CCNNGG 1 cut(s) 397
BssMI GATC 2 cut(s) 35, 363
BssT1I CCWWGG 1 cut(s) 397
Bst4CI ACNGT 2 cut(s) 342, 428
BstAPI GCANNNNNTGC 1 cut(s) 71
BstF5I GGATG 2 cut(s) 384, 396
BstKTI GATC 2 cut(s) 38, 366
BstMBI GATC 2 cut(s) 35, 363
BstMWI GCNNNNNNNGC 3 cut(s) 48, 71, 275
BstNSI RCATGY 1 cut(s) 16
BstSFI CTRYAG 1 cut(s) 270
BstV1I GCAGC 2 cut(s) 77, 283
BstX2I RGATCY 1 cut(s) 35
BstYI RGATCY 1 cut(s) 35
BsuRI GGCC 2 cut(s) 396, 402
BtrI CACGTC 1 cut(s) 303
BtsCI GGATG 2 cut(s) 384, 396
BtsIMutI CAGTG 2 cut(s) 319, 433
CaiI CAGNNNCTG 1 cut(s) 296
Cfr13I GGNCC 2 cut(s) 394, 409
CviAII CATG 1 cut(s) 13
CviJI RGCY 9 cut(s) 68, 238, 248, 296, 354, 371, 396, 402, 419
CviKI_1 RGCY 9 cut(s) 68, 238, 248, 296, 354, 371, 396, 402, 419
DpnI GATC 2 cut(s) 37, 365
DpnII GATC 2 cut(s) 35, 363
Eco130I CCWWGG 1 cut(s) 397
Eco147I AGGCCT 1 cut(s) 402
Eco47I GGWCC 1 cut(s) 409
EcoO109I RGGNCCY 1 cut(s) 409
EcoT14I CCWWGG 1 cut(s) 397
EcoT22I ATGCAT 2 cut(s) 6, 150
ErhI CCWWGG 1 cut(s) 397
FaeI CATG 1 cut(s) 16
FaiI YATR 2 cut(s) 14, 48
FatI CATG 1 cut(s) 12
FauI CCCGC 1 cut(s) 47
FblI GTMKAC 1 cut(s) 223
Fnu4HI GCNGC 2 cut(s) 66, 297
FokI GGATG 2 cut(s) 391, 403
Fsp4HI GCNGC 2 cut(s) 66, 297
FspBI CTAG 1 cut(s) 62
GluI GCNGC 2 cut(s) 66, 297
GsaI CCCAGC 1 cut(s) 252
HaeIII GGCC 2 cut(s) 396, 402
Hin1II CATG 1 cut(s) 16
HindIII AAGCTT 1 cut(s) 369
HinfI GANTC 1 cut(s) 130
Hpy166II GTNNAC 1 cut(s) 224
Hpy188I TCNGA 1 cut(s) 360
Hpy188III TCNNGA 1 cut(s) 197
Hpy8I GTNNAC 1 cut(s) 224
HpyCH4III ACNGT 2 cut(s) 342, 428
HpyCH4IV ACGT 1 cut(s) 302
HpyCH4V TGCA 4 cut(s) 4, 74, 148, 161
HpyF10VI GCNNNNNNNGC 3 cut(s) 48, 71, 275
HpySE526I ACGT 1 cut(s) 302
Hsp92II CATG 1 cut(s) 16
Kzo9I GATC 2 cut(s) 35, 363
LpnPI CCDG 5 cut(s) 157, 194, 234, 276, 339
Lsp1109I GCAGC 2 cut(s) 77, 283
LweI GCATC 4 cut(s) 13, 135, 157, 170
MaeI CTAG 1 cut(s) 62
MaeII ACGT 1 cut(s) 302
MalI GATC 2 cut(s) 37, 365
MboI GATC 2 cut(s) 35, 363
MboII GAAGA 3 cut(s) 125, 143, 373
MflI RGATCY 1 cut(s) 35
MluCI AATT 1 cut(s) 79
MnlI CCTC 3 cut(s) 201, 224, 381
Mph1103I ATGCAT 2 cut(s) 6, 150
MwoI GCNNNNNNNGC 3 cut(s) 48, 71, 275
NdeII GATC 2 cut(s) 35, 363
NlaIII CATG 1 cut(s) 16
NlaIV GGNNCC 2 cut(s) 213, 410
NsiI ATGCAT 2 cut(s) 6, 150
NspI RCATGY 1 cut(s) 16
PceI AGGCCT 1 cut(s) 402
PfeI GAWTC 1 cut(s) 130
PkrI GCNGC 2 cut(s) 67, 298
PpuMI RGGWCCY 1 cut(s) 409
Psp5II RGGWCCY 1 cut(s) 409
PspFI CCCAGC 1 cut(s) 248
PspN4I GGNNCC 2 cut(s) 213, 410
PspPI GGNCC 2 cut(s) 394, 409
PspPPI RGGWCCY 1 cut(s) 409
PstNI CAGNNNCTG 1 cut(s) 296
PsuI RGATCY 1 cut(s) 35
SatI GCNGC 2 cut(s) 66, 297
Sau3AI GATC 2 cut(s) 35, 363
Sau96I GGNCC 2 cut(s) 394, 409
SetI ASST 3 cut(s) 217, 305, 373
SfaNI GCATC 4 cut(s) 13, 135, 157, 170
SfcI CTRYAG 1 cut(s) 270
SinI GGWCC 1 cut(s) 409
Sse9I AATT 1 cut(s) 79
SseBI AGGCCT 1 cut(s) 402
SsiI CCGC 2 cut(s) 40, 433
SspMI CTAG 1 cut(s) 62
StuI AGGCCT 1 cut(s) 402
StyI CCWWGG 1 cut(s) 397
TaaI ACNGT 2 cut(s) 342, 428
TaiI ACGT 1 cut(s) 305
TasI AATT 1 cut(s) 79
TfiI GAWTC 1 cut(s) 130
TscAI CASTG 2 cut(s) 319, 433
TseI GCWGC 2 cut(s) 65, 296
TspGWI ACGGA 1 cut(s) 209
TspRI CASTG 2 cut(s) 319, 433
VpaK11BI GGWCC 1 cut(s) 409
XceI RCATGY 1 cut(s) 16
XmiI GTMKAC 1 cut(s) 223
XspI CTAG 1 cut(s) 62
Zsp2I ATGCAT 2 cut(s) 6, 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.