Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0004201

Physical Location & Seq

Genomic Coordinates Forward (+)

26522583 .. 26531858

Gene Structure 9276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG122400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGTGCATCCCATCACTACCTAGTATGGTTTTGCACAGAACAGGATCCTGTGTTAGGATATCTTCAAATGCGGAGTCCCTTATCTGGCGTGCTGAGAGGCTTTTCTTCCTGAATGGTGAACAGGATCTCTCAGCATTTCTACTGGAAAATGAAGGGGGCTTGCAAATTTTGAAGAGGTGGGATGTGCCTTGGGAATGGCAAACAGTGTCATTGACATCACTGGCTTGTGGACTGAGTTTTGTTTTGACAGGATTGGTAGAGGCAGCAGTTGTACCCTATTTAGGATTGAGCATTCAGGATTTGAGTCTAGATGAGAAGGCAGAGTTTCTGTTGGTTGCTCAAGGTGTTACGACTGCAGCCATACTTGGAGTTCTGTATACCGTTGCTGGCAAATTCCAACCGCTGCCTCAAGATATTTATCGCTATGATTGGAGGGAACCTTTCAGTCTACCGAGAGGGTGGCTTTTGTGGGCTGGGATTGGTCTTGTTGGTGCTGTAGTTGCTGTGGCATTGACAGGGGCTGCCACGTCCTTTTTCAGTGGGCAAACCCCAGAAAGAGAGAAACTGTCATCTTGTGGCTTTCCGAAGATCAAAGCTTTTGGGACGATATTGAGGATGGGCCAAGGCCTTTGGGTCCTTTTGGCTTACAACAGTCCCGGCACCATCTCAGCGATTAGCTCCCATCGATCCGACAAGTCCTCGGAGAAGCTCACCCACACGGCCACGCCTACTCGAATAGCTTGTCCTCCGATCGAGTCCACCCAGCCGATGACTGAGTCCAATCAGTTGAATCCAATCAATGGCGGCACCCTCCGATTCCGGGTCACCGTTGCCTCTACCGAGGCCAATGGGCTTGGGCAACTAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abi

Protein Analysis

289

Amino Acids

31.34

Weight (kDa)

5.98

Isoelectric Point (pI)

39.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14270 AT1G14270 AT1G14270 AT1G14270
fragaria_vesca	FvH4_4g31430 FvH4_4g31430 FvH4_4g31430
malus_domestica	MD13G1072600.v1.1 MD16G1073400.v1.1
prunus_persica	Prupe.1G273600_v2.0.a1 Prupe.1G273600_v2.0.a1
pyrus_communis	pycom13g06510 pycom16g06350
rosa_chinensis	RchiOBHm_Chr4g0413061 RchiOBHm_Chr4g0439911
rosa_laevigata	RLG00000006227
rosa_multiflora	Rmu_sc0004020.1_g000003 Rmu_sc0022459.1_g000004
rosa_roxburghii	Rroxscaffold_1G00051590 Rroxscaffold_5G00380860 Rroxscaffold_7G00174140
rosa_rugosa	Rorug04G0322300
rosa_samantha	Rh1CG266600 Rh3CG366200 Rh4AG122400 Rh4AG373300 Rh4BG385600 Rh4CG400100 Rh4DG379900 Rh5AG410800 Rh7AG445800
rosa_wichuraiana	Rw4G031920 Rw7G025690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	659, 806
AccB7I	CCANNNNNTGG	1 cut(s)	800
AccI	GTMKAC	2 cut(s)	377, 448
AciI	CCGC	3 cut(s)	71, 401, 804
AclWI	GGATC	4 cut(s)	39, 52, 132, 681
AcoI	YGGCCR	1 cut(s)	720
AcsI	RAATTY	2 cut(s)	165, 392
AfaI	GTAC	1 cut(s)	273
AfiI	CCNNNNNNNGG	5 cut(s)	54, 84, 281, 800, 820
AgsI	TTSAA	3 cut(s)	66, 172, 790
AjiI	CACGTC	1 cut(s)	528
AluBI	AGCT	4 cut(s)	596, 678, 709, 740
AluI	AGCT	4 cut(s)	596, 678, 709, 740
AlwI	GGATC	4 cut(s)	39, 52, 132, 681
AlwNI	CAGNNNCTG	1 cut(s)	521
AoxI	GGCC	4 cut(s)	619, 625, 720, 843
ApeKI	GCWGC	4 cut(s)	263, 356, 403, 521
ApoI	RAATTY	2 cut(s)	165, 392
ArsI	GACNNNNNNTTYG	4 cut(s)	59, 91, 727, 759
AspS9I	GGNCC	2 cut(s)	619, 634
AsuC2I	CCSGG	2 cut(s)	657, 821
AsuHPI	GGTGA	3 cut(s)	128, 703, 817
AvaII	GGWCC	1 cut(s)	634
BamHI	GGATCC	1 cut(s)	44
BanI	GGYRCC	2 cut(s)	659, 806
BbvI	GCAGC	4 cut(s)	275, 368, 390, 508
BccI	CCATC	4 cut(s)	19, 610, 671, 690
BceAI	ACGGC	1 cut(s)	735
BcnI	CCSGG	2 cut(s)	657, 821
BfaI	CTAG	3 cut(s)	21, 308, 863
BfmI	CTRYAG	2 cut(s)	354, 495
BisI	GCNGC	5 cut(s)	264, 357, 404, 522, 805
BlsI	GCNGC	5 cut(s)	265, 358, 405, 523, 806
Bme1390I	CCNGG	2 cut(s)	657, 821
Bme18I	GGWCC	1 cut(s)	634
BmgBI	CACGTC	1 cut(s)	528
BmgT120I	GGNCC	2 cut(s)	619, 634
BmiI	GGNNCC	5 cut(s)	46, 438, 635, 661, 808
BmrFI	CCNGG	2 cut(s)	657, 821
BmsI	GCATC	1 cut(s)	15
BpuEI	CTTGAG	2 cut(s)	324, 393
BpuMI	CCSGG	2 cut(s)	657, 821
Bsa29I	ATCGAT	1 cut(s)	685
BsaBI	GATNNNNATC	1 cut(s)	417
BsaJI	CCNNGG	4 cut(s)	188, 622, 699, 840
Bsc4I	CCNNNNNNNGG	5 cut(s)	54, 84, 281, 800, 820
Bse1I	ACTGG	2 cut(s)	147, 225
Bse8I	GATNNNNATC	1 cut(s)	417
BseCI	ATCGAT	1 cut(s)	685
BseDI	CCNNGG	4 cut(s)	188, 622, 699, 840
BseGI	GGATG	3 cut(s)	6, 187, 621
BseJI	GATNNNNATC	1 cut(s)	417
BseLI	CCNNNNNNNGG	5 cut(s)	54, 84, 281, 800, 820
BseMII	CTCAG	5 cut(s)	84, 144, 224, 681, 765
BseNI	ACTGG	2 cut(s)	147, 225
BseXI	GCAGC	4 cut(s)	275, 368, 390, 508
BseYI	CCCAGC	2 cut(s)	473, 762
Bsh1285I	CGRYCG	1 cut(s)	753
BshFI	GGCC	4 cut(s)	621, 627, 722, 845
BshNI	GGYRCC	2 cut(s)	659, 806
BshVI	ATCGAT	1 cut(s)	685
BsiEI	CGRYCG	1 cut(s)	753
BsiSI	CCGG	2 cut(s)	657, 820
BslFI	GGGAC	3 cut(s)	61, 616, 639
BslI	CCNNNNNNNGG	5 cut(s)	54, 84, 281, 800, 820
BsmFI	GGGAC	3 cut(s)	61, 616, 639
BsmI	GAATGC	1 cut(s)	291
BsnI	GGCC	4 cut(s)	621, 627, 722, 845
Bsp143I	GATC	5 cut(s)	44, 124, 588, 686, 750
BspACI	CCGC	3 cut(s)	71, 401, 804
BspANI	GGCC	4 cut(s)	621, 627, 722, 845
BspCNI	CTCAG	5 cut(s)	85, 143, 225, 680, 766
BspDI	ATCGAT	1 cut(s)	685
BspLI	GGNNCC	5 cut(s)	46, 438, 635, 661, 808
BspMAI	CTGCAG	1 cut(s)	358
BspPI	GGATC	4 cut(s)	39, 52, 132, 681
BspT107I	GGYRCC	2 cut(s)	659, 806
BsrI	ACTGG	2 cut(s)	147, 225
BssECI	CCNNGG	4 cut(s)	188, 622, 699, 840
BssMI	GATC	5 cut(s)	44, 124, 588, 686, 750
BssNAI	GTATAC	1 cut(s)	378
BssT1I	CCWWGG	2 cut(s)	188, 622
Bst1107I	GTATAC	1 cut(s)	378
Bst4CI	ACNGT	5 cut(s)	205, 382, 567, 653, 829
Bst6I	CTCTTC	1 cut(s)	167
BstC8I	GCNNGC	3 cut(s)	90, 161, 388
BstDEI	CTNAG	5 cut(s)	93, 130, 233, 667, 774
BstEII	GGTNACC	1 cut(s)	823
BstENI	CCTNNNNNAGG	1 cut(s)	52
BstF5I	GGATG	3 cut(s)	6, 187, 621
BstKTI	GATC	5 cut(s)	47, 127, 591, 689, 753
BstMBI	GATC	5 cut(s)	44, 124, 588, 686, 750
BstMCI	CGRYCG	1 cut(s)	753
BstMWI	GCNNNNNNNGC	1 cut(s)	500
BstPI	GGTNACC	1 cut(s)	823
BstSCI	CCNGG	2 cut(s)	655, 819
BstSFI	CTRYAG	2 cut(s)	354, 495
BstV1I	GCAGC	4 cut(s)	275, 368, 390, 508
BstX2I	RGATCY	2 cut(s)	44, 124
BstYI	RGATCY	2 cut(s)	44, 124
BstZ17I	GTATAC	1 cut(s)	378
Bsu15I	ATCGAT	1 cut(s)	685
BsuRI	GGCC	4 cut(s)	621, 627, 722, 845
BsuTUI	ATCGAT	1 cut(s)	685
BtrI	CACGTC	1 cut(s)	528
BtsCI	GGATG	3 cut(s)	6, 187, 621
BtsIMutI	CAGTG	3 cut(s)	210, 218, 544
Cac8I	GCNNGC	3 cut(s)	90, 161, 388
CaiI	CAGNNNCTG	1 cut(s)	521
Cfr13I	GGNCC	2 cut(s)	619, 634
ClaI	ATCGAT	1 cut(s)	685
Csp6I	GTAC	1 cut(s)	272
CviQI	GTAC	1 cut(s)	272
DdeI	CTNAG	5 cut(s)	93, 130, 233, 667, 774
DpnI	GATC	5 cut(s)	46, 126, 590, 688, 752
DpnII	GATC	5 cut(s)	44, 124, 588, 686, 750
EaeI	YGGCCR	1 cut(s)	720
Eam1104I	CTCTTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	167
Eco130I	CCWWGG	2 cut(s)	188, 622
Eco147I	AGGCCT	1 cut(s)	627
Eco32I	GATATC	1 cut(s)	60
Eco47I	GGWCC	1 cut(s)	634
Eco91I	GGTNACC	1 cut(s)	823
EcoNI	CCTNNNNNAGG	1 cut(s)	52
EcoO109I	RGGNCCY	1 cut(s)	634
EcoO65I	GGTNACC	1 cut(s)	823
EcoRV	GATATC	1 cut(s)	60
EcoT14I	CCWWGG	2 cut(s)	188, 622
ErhI	CCWWGG	2 cut(s)	188, 622
FaiI	YATR	4 cut(s)	26, 362, 378, 426
FaqI	GGGAC	3 cut(s)	61, 616, 639
FblI	GTMKAC	2 cut(s)	377, 448
Fnu4HI	GCNGC	5 cut(s)	264, 357, 404, 522, 805
FokI	GGATG	2 cut(s)	194, 628
Fsp4HI	GCNGC	5 cut(s)	264, 357, 404, 522, 805
FspBI	CTAG	3 cut(s)	21, 308, 863
GluI	GCNGC	5 cut(s)	264, 357, 404, 522, 805
GsaI	CCCAGC	2 cut(s)	477, 766
HaeIII	GGCC	4 cut(s)	621, 627, 722, 845
HapII	CCGG	2 cut(s)	657, 820
HindIII	AAGCTT	1 cut(s)	594
HinfI	GANTC	6 cut(s)	74, 304, 755, 776, 790, 816
HpaII	CCGG	2 cut(s)	657, 820
HphI	GGTGA	3 cut(s)	128, 703, 817
Hpy166II	GTNNAC	5 cut(s)	119, 230, 378, 449, 759
Hpy188I	TCNGA	5 cut(s)	585, 691, 703, 750, 815
Hpy188III	TCNNGA	4 cut(s)	109, 296, 308, 410
Hpy8I	GTNNAC	5 cut(s)	119, 230, 378, 449, 759
HpyAV	CCTTC	2 cut(s)	146, 310
HpyCH4III	ACNGT	5 cut(s)	205, 382, 567, 653, 829
HpyCH4IV	ACGT	1 cut(s)	527
HpyCH4V	TGCA	4 cut(s)	6, 34, 163, 356
HpyF10VI	GCNNNNNNNGC	1 cut(s)	500
HpyF3I	CTNAG	5 cut(s)	93, 130, 233, 667, 774
HpySE526I	ACGT	1 cut(s)	527
Kzo9I	GATC	5 cut(s)	44, 124, 588, 686, 750
LmnI	GCTCC	1 cut(s)	683
Lsp1109I	GCAGC	4 cut(s)	275, 368, 390, 508
LweI	GCATC	1 cut(s)	15
MaeI	CTAG	3 cut(s)	21, 308, 863
MaeII	ACGT	1 cut(s)	527
MaeIII	GTNAC	2 cut(s)	346, 823
MalI	GATC	5 cut(s)	46, 126, 590, 688, 752
MboI	GATC	5 cut(s)	44, 124, 588, 686, 750
MboII	GAAGA	4 cut(s)	54, 97, 184, 598
MflI	RGATCY	2 cut(s)	44, 124
MluCI	AATT	2 cut(s)	165, 392
MlyI	GAGTC	4 cut(s)	83, 313, 764, 785
MmeI	TCCRAC	2 cut(s)	421, 714
MspA1I	CMGCKG	1 cut(s)	403
MspI	CCGG	2 cut(s)	657, 820
MspR9I	CCNGG	2 cut(s)	657, 821
Mva1269I	GAATGC	1 cut(s)	291
MwoI	GCNNNNNNNGC	1 cut(s)	500
NciI	CCSGG	2 cut(s)	657, 821
NdeII	GATC	5 cut(s)	44, 124, 588, 686, 750
NlaIV	GGNNCC	5 cut(s)	46, 438, 635, 661, 808
NmuCI	GTSAC	1 cut(s)	823
PceI	AGGCCT	1 cut(s)	627
PctI	GAATGC	1 cut(s)	291
PfeI	GAWTC	2 cut(s)	790, 816
PflFI	GACNNNGTC	1 cut(s)	775
PflMI	CCANNNNNTGG	1 cut(s)	800
PkrI	GCNGC	5 cut(s)	265, 358, 405, 523, 806
Ple19I	CGATCG	1 cut(s)	753
PleI	GAGTC	4 cut(s)	82, 312, 763, 784
PpsI	GAGTC	4 cut(s)	82, 312, 763, 784
PpuMI	RGGWCCY	1 cut(s)	634
Psp5II	RGGWCCY	1 cut(s)	634
PspEI	GGTNACC	1 cut(s)	823
PspFI	CCCAGC	2 cut(s)	473, 762
PspN4I	GGNNCC	5 cut(s)	46, 438, 635, 661, 808
PspPI	GGNCC	2 cut(s)	619, 634
PspPPI	RGGWCCY	1 cut(s)	634
PstI	CTGCAG	1 cut(s)	358
PstNI	CAGNNNCTG	1 cut(s)	521
PsuI	RGATCY	2 cut(s)	44, 124
PsyI	GACNNNGTC	1 cut(s)	775
PvuI	CGATCG	1 cut(s)	753
RsaI	GTAC	1 cut(s)	273
RsaNI	GTAC	1 cut(s)	272
SatI	GCNGC	5 cut(s)	264, 357, 404, 522, 805
Sau3AI	GATC	5 cut(s)	44, 124, 588, 686, 750
Sau96I	GGNCC	2 cut(s)	619, 634
SchI	GAGTC	4 cut(s)	83, 313, 764, 785
ScrFI	CCNGG	2 cut(s)	657, 821
SetI	ASST	9 cut(s)	22, 179, 346, 442, 530, 598, 680, 711, 742
SfaNI	GCATC	1 cut(s)	15
SfcI	CTRYAG	2 cut(s)	354, 495
SinI	GGWCC	1 cut(s)	634
SmlI	CTYRAG	2 cut(s)	339, 408
SmoI	CTYRAG	2 cut(s)	339, 408
Sse9I	AATT	2 cut(s)	165, 392
SseBI	AGGCCT	1 cut(s)	627
SsiI	CCGC	3 cut(s)	71, 401, 804
SspMI	CTAG	3 cut(s)	21, 308, 863
StuI	AGGCCT	1 cut(s)	627
StyD4I	CCNGG	2 cut(s)	655, 819
StyI	CCWWGG	2 cut(s)	188, 622
TaaI	ACNGT	5 cut(s)	205, 382, 567, 653, 829
TaiI	ACGT	1 cut(s)	530
TaqI	TCGA	3 cut(s)	685, 733, 753
TasI	AATT	2 cut(s)	165, 392
TauI	GCSGC	1 cut(s)	807
TfiI	GAWTC	2 cut(s)	790, 816
TscAI	CASTG	3 cut(s)	210, 225, 544
TseFI	GTSAC	1 cut(s)	823
TseI	GCWGC	4 cut(s)	263, 356, 403, 521
Tsp45I	GTSAC	1 cut(s)	823
TspDTI	ATGAA	1 cut(s)	165
TspRI	CASTG	3 cut(s)	210, 225, 544
Tth111I	GACNNNGTC	1 cut(s)	775
Van91I	CCANNNNNTGG	1 cut(s)	800
VpaK11BI	GGWCC	1 cut(s)	634
XagI	CCTNNNNNAGG	1 cut(s)	52
XapI	RAATTY	2 cut(s)	165, 392
XbaI	TCTAGA	1 cut(s)	307
XmiI	GTMKAC	2 cut(s)	377, 448
XspI	CTAG	3 cut(s)	21, 308, 863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.