Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022459.1

Orthogroup ID

OG0004201

Physical Location & Seq

Genomic Coordinates Forward (+)

15862 .. 18802

Gene Structure 2941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022459.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

atggtttacaccctcttcacatctctagctcaatccccacttcccactttctcacacaccccttacttaaatccctccaaaaccttcctcaagcgaacccacacacttttcctcaatggtcacaccaggtcaaaccacctctcacggctcagaaccaccaggccgccgcctcatgtctgcttttccagcggcggaggaaaacccagacccgatttccaagaaaaggaaaatgaagggggcttgcaaattttgaagaggtgggatgtgccttgggaatggcaaacagtgtcattgacatcactggcttgtgggctgagttttgttttgacaggattggtagaggcagcagttgtaccctatttaggattgagcattcaggatttgagtctagatgagaaggcagagtttctgttggttgctcaaggtgttacgactgcagccatacttggagttttgtataccgttgccggcaagttccaaccgctgcctcaagatatttatcgctatgattggagggaacctttcagtctacagagagggtggcttttgtgggctgggattggtcttgttggtgctgtagctgctgtggcattgacaggggctgccacgtcctttttcagtgggcaaaccccagaaagagagaaggacgctctagttagcttgctcccattaattggatcatcaagtattagcactgcttgcttgttaggcatcactggagttttggctccaattcttgaggaaactgtgttccgtgggttttttatggtctccatgactaagtgggtacctacaccagttgctgttgtaattagtgcagctgtatttgctcttgcacatctcactcctggagagtttccccagctgtttgtgctaggcgctgctatgggattgtcgtatgctcaaactcgcaaccttttgacccccatcacaatacatgctttctggaactcgggagttatattgcttctgaccttccttcagcttcaagggtacgatatcaaggaattgttgcaggcaacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abi

Protein Analysis

341

Amino Acids

37.19

Weight (kDa)

7.76

Isoelectric Point (pI)

41.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14270 AT1G14270 AT1G14270 AT1G14270
fragaria_vesca	FvH4_4g31430 FvH4_4g31430 FvH4_4g31430
malus_domestica	MD13G1072600.v1.1 MD16G1073400.v1.1
prunus_persica	Prupe.1G273600_v2.0.a1 Prupe.1G273600_v2.0.a1
pyrus_communis	pycom13g06510 pycom16g06350
rosa_chinensis	RchiOBHm_Chr4g0413061 RchiOBHm_Chr4g0439911
rosa_laevigata	RLG00000006227
rosa_multiflora	Rmu_sc0004020.1_g000003 Rmu_sc0022459.1_g000004
rosa_roxburghii	Rroxscaffold_1G00051590 Rroxscaffold_5G00380860 Rroxscaffold_7G00174140
rosa_rugosa	Rorug04G0322300
rosa_samantha	Rh1CG266600 Rh3CG366200 Rh4AG122400 Rh4AG373300 Rh4BG385600 Rh4CG400100 Rh4DG379900 Rh5AG410800 Rh7AG445800
rosa_wichuraiana	Rw4G031920 Rw7G025690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	787
AccB1I	GGYRCC	1 cut(s)	787
AccB7I	CCANNNNNTGG	1 cut(s)	674
AccI	GTMKAC	2 cut(s)	458, 529
AciI	CCGC	5 cut(s)	164, 167, 189, 192, 482
AclWI	GGATC	1 cut(s)	685
AcsI	RAATTY	1 cut(s)	246
AcuI	CTGAAG	1 cut(s)	965
AfaI	GTAC	3 cut(s)	354, 789, 995
AfiI	CCNNNNNNNGG	3 cut(s)	223, 362, 674
AgsI	TTSAA	2 cut(s)	253, 989
AjiI	CACGTC	1 cut(s)	609
AjnI	CCWGG	3 cut(s)	125, 158, 847
AloI	GAACNNNNNNTCC	2 cut(s)	734, 766
AluBI	AGCT	6 cut(s)	29, 581, 660, 821, 865, 985
AluI	AGCT	6 cut(s)	29, 581, 660, 821, 865, 985
Alw26I	GTCTC	1 cut(s)	775
AlwI	GGATC	1 cut(s)	685
AlwNI	CAGNNNCTG	2 cut(s)	602, 803
Ama87I	CYCGRG	1 cut(s)	952
AoxI	GGCC	1 cut(s)	161
ApeKI	GCWGC	7 cut(s)	344, 437, 484, 581, 602, 818, 881
ApoI	RAATTY	1 cut(s)	246
AseI	ATTAAT	1 cut(s)	671
Asp718I	GGTACC	1 cut(s)	787
AspLEI	GCGC	1 cut(s)	881
AvaI	CYCGRG	1 cut(s)	952
BanI	GGYRCC	1 cut(s)	787
BbvI	GCAGC	7 cut(s)	356, 449, 471, 568, 589, 830, 868
BccI	CCATC	1 cut(s)	935
BceAI	ACGGC	1 cut(s)	161
BciT130I	CCWGG	3 cut(s)	127, 160, 849
BcoDI	GTCTC	1 cut(s)	775
BfaI	CTAG	4 cut(s)	26, 389, 653, 875
BfmI	CTRYAG	3 cut(s)	435, 530, 576
BfoI	RGCGCY	1 cut(s)	882
Bme1390I	CCNGG	3 cut(s)	127, 160, 849
BmeT110I	CYCGRG	1 cut(s)	952
BmgBI	CACGTC	1 cut(s)	609
BmiI	GGNNCC	3 cut(s)	519, 729, 789
BmrFI	CCNGG	3 cut(s)	127, 160, 849
BmsI	GCATC	1 cut(s)	720
BpmI	CTGGAG	2 cut(s)	738, 870
BpuEI	CTTGAG	4 cut(s)	74, 405, 474, 758
BsaBI	GATNNNNATC	1 cut(s)	498
BsaI	GGTCTC	1 cut(s)	775
BsaJI	CCNNGG	2 cut(s)	269, 754
Bsc4I	CCNNNNNNNGG	3 cut(s)	223, 362, 674
Bse118I	RCCGGY	1 cut(s)	467
Bse1I	ACTGG	3 cut(s)	306, 721, 797
Bse8I	GATNNNNATC	1 cut(s)	498
BseBI	CCWGG	3 cut(s)	127, 160, 849
BseDI	CCNNGG	2 cut(s)	269, 754
BseGI	GGATG	1 cut(s)	268
BseJI	GATNNNNATC	1 cut(s)	498
BseLI	CCNNNNNNNGG	3 cut(s)	223, 362, 674
BseMII	CTCAG	2 cut(s)	163, 305
BseNI	ACTGG	3 cut(s)	306, 721, 797
BseXI	GCAGC	7 cut(s)	356, 449, 471, 568, 589, 830, 868
BseYI	CCCAGC	2 cut(s)	554, 861
BsgI	GTGCAG	1 cut(s)	837
BshFI	GGCC	1 cut(s)	163
BshNI	GGYRCC	1 cut(s)	787
BsiHKCI	CYCGRG	1 cut(s)	952
BsiSI	CCGG	1 cut(s)	468
BslI	CCNNNNNNNGG	3 cut(s)	223, 362, 674
BsmAI	GTCTC	1 cut(s)	775
BsmI	GAATGC	1 cut(s)	372
BsnI	GGCC	1 cut(s)	163
Bso31I	GGTCTC	1 cut(s)	775
BsoBI	CYCGRG	1 cut(s)	952
Bsp143I	GATC	1 cut(s)	677
BspACI	CCGC	5 cut(s)	164, 167, 189, 192, 482
BspANI	GGCC	1 cut(s)	163
BspCNI	CTCAG	2 cut(s)	162, 306
BspLI	GGNNCC	3 cut(s)	519, 729, 789
BspMAI	CTGCAG	1 cut(s)	439
BspPI	GGATC	1 cut(s)	685
BspT107I	GGYRCC	1 cut(s)	787
BspTNI	GGTCTC	1 cut(s)	775
BsrFI	RCCGGY	1 cut(s)	467
BsrI	ACTGG	3 cut(s)	306, 721, 797
BssAI	RCCGGY	1 cut(s)	467
BssECI	CCNNGG	2 cut(s)	269, 754
BssMI	GATC	1 cut(s)	677
BssNAI	GTATAC	1 cut(s)	459
BssT1I	CCWWGG	1 cut(s)	269
Bst1107I	GTATAC	1 cut(s)	459
Bst2UI	CCWGG	3 cut(s)	127, 160, 849
Bst4CI	ACNGT	3 cut(s)	286, 463, 748
Bst6I	CTCTTC	2 cut(s)	20, 248
BstAPI	GCANNNNNTGC	1 cut(s)	699
BstC8I	GCNNGC	5 cut(s)	242, 469, 662, 700, 1017
BstDEI	CTNAG	3 cut(s)	149, 314, 780
BstDSI	CCRYGG	1 cut(s)	754
BstF5I	GGATG	1 cut(s)	268
BstH2I	RGCGCY	1 cut(s)	882
BstHHI	GCGC	1 cut(s)	881
BstKTI	GATC	1 cut(s)	680
BstMAI	GTCTC	1 cut(s)	775
BstMBI	GATC	1 cut(s)	677
BstMWI	GCNNNNNNNGC	7 cut(s)	186, 581, 587, 699, 708, 827, 871
BstNI	CCWGG	3 cut(s)	127, 160, 849
BstNSI	RCATGY	1 cut(s)	941
BstSCI	CCNGG	3 cut(s)	125, 158, 847
BstSFI	CTRYAG	3 cut(s)	435, 530, 576
BstV1I	GCAGC	7 cut(s)	356, 449, 471, 568, 589, 830, 868
BstZ17I	GTATAC	1 cut(s)	459
BsuRI	GGCC	1 cut(s)	163
BtgI	CCRYGG	1 cut(s)	754
BtrI	CACGTC	1 cut(s)	609
BtsCI	GGATG	1 cut(s)	268
BtsI	GCAGTG	1 cut(s)	693
BtsIMutI	CAGTG	5 cut(s)	291, 299, 625, 693, 714
Cac8I	GCNNGC	5 cut(s)	242, 469, 662, 700, 1017
CaiI	CAGNNNCTG	2 cut(s)	602, 803
CfoI	GCGC	1 cut(s)	881
Cfr10I	RCCGGY	1 cut(s)	467
CseI	GACGC	1 cut(s)	656
CsiI	ACCWGGT	1 cut(s)	125
Csp6I	GTAC	3 cut(s)	353, 788, 994
CviAII	CATG	3 cut(s)	173, 775, 938
CviQI	GTAC	3 cut(s)	353, 788, 994
DdeI	CTNAG	3 cut(s)	149, 314, 780
DpnI	GATC	1 cut(s)	679
DpnII	GATC	1 cut(s)	677
Eam1104I	CTCTTC	2 cut(s)	20, 248
EarI	CTCTTC	2 cut(s)	20, 248
EciI	GGCGGA	1 cut(s)	207
Eco130I	CCWWGG	1 cut(s)	269
Eco31I	GGTCTC	1 cut(s)	775
Eco32I	GATATC	1 cut(s)	1000
Eco57I	CTGAAG	1 cut(s)	965
Eco88I	CYCGRG	1 cut(s)	952
EcoRII	CCWGG	3 cut(s)	125, 158, 847
EcoRV	GATATC	1 cut(s)	1000
EcoT14I	CCWWGG	1 cut(s)	269
ErhI	CCWWGG	1 cut(s)	269
FaeI	CATG	3 cut(s)	176, 778, 941
FatI	CATG	3 cut(s)	172, 774, 937
FblI	GTMKAC	2 cut(s)	458, 529
FokI	GGATG	1 cut(s)	275
FspBI	CTAG	4 cut(s)	26, 389, 653, 875
GlaI	GCGC	1 cut(s)	880
GsaI	CCCAGC	2 cut(s)	558, 865
GsuI	CTGGAG	2 cut(s)	738, 870
HaeII	RGCGCY	1 cut(s)	882
HaeIII	GGCC	1 cut(s)	163
HapII	CCGG	1 cut(s)	468
HgaI	GACGC	1 cut(s)	656
HhaI	GCGC	1 cut(s)	881
Hin1II	CATG	3 cut(s)	176, 778, 941
Hin6I	GCGC	1 cut(s)	879
HinP1I	GCGC	1 cut(s)	879
HinfI	GANTC	1 cut(s)	385
HpaII	CCGG	1 cut(s)	468
Hpy166II	GTNNAC	3 cut(s)	7, 459, 530
Hpy188I	TCNGA	2 cut(s)	152, 972
Hpy188III	TCNNGA	6 cut(s)	377, 389, 491, 737, 946, 954
Hpy8I	GTNNAC	3 cut(s)	7, 459, 530
HpyAV	CCTTC	6 cut(s)	94, 227, 391, 637, 985, 989
HpyCH4III	ACNGT	3 cut(s)	286, 463, 748
HpyCH4IV	ACGT	1 cut(s)	608
HpyCH4V	TGCA	5 cut(s)	244, 437, 818, 836, 1015
HpyF10VI	GCNNNNNNNGC	7 cut(s)	186, 581, 587, 699, 708, 827, 871
HpyF3I	CTNAG	3 cut(s)	149, 314, 780
HpySE526I	ACGT	1 cut(s)	608
Hsp92II	CATG	3 cut(s)	176, 778, 941
HspAI	GCGC	1 cut(s)	879
KpnI	GGTACC	1 cut(s)	791
KroI	GCCGGC	1 cut(s)	467
KroNI	GCCGGC	1 cut(s)	469
Kzo9I	GATC	1 cut(s)	677
LmnI	GCTCC	2 cut(s)	669, 733
Lsp1109I	GCAGC	7 cut(s)	356, 449, 471, 568, 589, 830, 868
LweI	GCATC	1 cut(s)	720
MabI	ACCWGGT	1 cut(s)	125
MaeI	CTAG	4 cut(s)	26, 389, 653, 875
MaeII	ACGT	1 cut(s)	608
MaeIII	GTNAC	2 cut(s)	119, 427
MalI	GATC	1 cut(s)	679
MboI	GATC	1 cut(s)	677
MboII	GAAGA	2 cut(s)	7, 265
MluCI	AATT	5 cut(s)	246, 672, 732, 810, 1007
MlyI	GAGTC	1 cut(s)	394
MmeI	TCCRAC	1 cut(s)	502
MroNI	GCCGGC	1 cut(s)	467
MseI	TTAA	2 cut(s)	68, 671
MspA1I	CMGCKG	4 cut(s)	189, 484, 821, 865
MspI	CCGG	1 cut(s)	468
MspR9I	CCNGG	3 cut(s)	127, 160, 849
Mva1269I	GAATGC	1 cut(s)	372
MvaI	CCWGG	3 cut(s)	127, 160, 849
MwoI	GCNNNNNNNGC	7 cut(s)	186, 581, 587, 699, 708, 827, 871
NaeI	GCCGGC	1 cut(s)	469
NdeII	GATC	1 cut(s)	677
NgoMIV	GCCGGC	1 cut(s)	467
NlaIII	CATG	3 cut(s)	176, 778, 941
NlaIV	GGNNCC	3 cut(s)	519, 729, 789
NmuCI	GTSAC	1 cut(s)	119
NspI	RCATGY	1 cut(s)	941
PctI	GAATGC	1 cut(s)	372
PdiI	GCCGGC	1 cut(s)	469
PflMI	CCANNNNNTGG	1 cut(s)	674
PfoI	TCCNGGA	1 cut(s)	847
PleI	GAGTC	1 cut(s)	393
PpsI	GAGTC	1 cut(s)	393
PshBI	ATTAAT	1 cut(s)	671
Psp6I	CCWGG	3 cut(s)	125, 158, 847
PspFI	CCCAGC	2 cut(s)	554, 861
PspGI	CCWGG	3 cut(s)	125, 158, 847
PspN4I	GGNNCC	3 cut(s)	519, 729, 789
PstI	CTGCAG	1 cut(s)	439
PstNI	CAGNNNCTG	2 cut(s)	602, 803
PvuII	CAGCTG	2 cut(s)	821, 865
RsaI	GTAC	3 cut(s)	354, 789, 995
RsaNI	GTAC	3 cut(s)	353, 788, 994
SaqAI	TTAA	2 cut(s)	68, 671
Sau3AI	GATC	1 cut(s)	677
SchI	GAGTC	1 cut(s)	394
ScrFI	CCNGG	3 cut(s)	127, 160, 849
SexAI	ACCWGGT	1 cut(s)	125
SfaNI	GCATC	1 cut(s)	720
SfcI	CTRYAG	3 cut(s)	435, 530, 576
SmlI	CTYRAG	4 cut(s)	89, 420, 489, 737
SmoI	CTYRAG	4 cut(s)	89, 420, 489, 737
Sse9I	AATT	5 cut(s)	246, 672, 732, 810, 1007
SsiI	CCGC	5 cut(s)	164, 167, 189, 192, 482
SspMI	CTAG	4 cut(s)	26, 389, 653, 875
StyD4I	CCNGG	3 cut(s)	125, 158, 847
StyI	CCWWGG	1 cut(s)	269
TaaI	ACNGT	3 cut(s)	286, 463, 748
TaiI	ACGT	1 cut(s)	611
TasI	AATT	5 cut(s)	246, 672, 732, 810, 1007
TauI	GCSGC	3 cut(s)	166, 169, 192
Tru1I	TTAA	2 cut(s)	68, 671
Tru9I	TTAA	2 cut(s)	68, 671
TscAI	CASTG	5 cut(s)	291, 306, 625, 700, 721
TseFI	GTSAC	1 cut(s)	119
TseI	GCWGC	7 cut(s)	344, 437, 484, 581, 602, 818, 881
Tsp45I	GTSAC	1 cut(s)	119
TspDTI	ATGAA	1 cut(s)	246
TspGWI	ACGGA	1 cut(s)	743
TspRI	CASTG	5 cut(s)	291, 306, 625, 700, 721
Van91I	CCANNNNNTGG	1 cut(s)	674
VspI	ATTAAT	1 cut(s)	671
XapI	RAATTY	1 cut(s)	246
XbaI	TCTAGA	1 cut(s)	388
XceI	RCATGY	1 cut(s)	941
XmiI	GTMKAC	2 cut(s)	458, 529
XspI	CTAG	4 cut(s)	26, 389, 653, 875

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.