Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0004201

Physical Location & Seq

Genomic Coordinates Forward (+)

71001208 .. 71025498

Gene Structure 24291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG410800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGTGTTGGTTTCATGTCTTCAGGAACGCTCAGATGGGAGGGCAAATATCTCGTCTTATGAAGATTTGTGTTCTTTCCTGTGTTTTGCTAATGTGCATCCCATCACTACCTAGTATGGTTTTGCACAGAACAGGATCCTGTGTTAGGATATCTTCAAATGCGGAATCCCTTATCTGGCGTGCTGAGAGGCTTTTCTTCCTGAATGGTGAACAGGATCTCTCAGCATTTCTACTGGTGGATTTGGGAATAGTCAAGTATCCAACTTACAAGTGCATAGTCTCACAACAAATTTTCTCAGCTCGAGATGATTTGCTTGGCTATGAAGAGGTGTCCTTTTATCTTTGTGCAAAAGAAAATGAAGGGGGCTTGCAAATTTTGAAGAGGTGGGATGTGCCTTGGGAATGGCAAACAGTGTCATTGACATCACTGGCTTGTGGACTGAGGATTGGTAGAGGCAGCAGTTTGTACGTTACGACTGCGGCCATACTTGGAGTTCTGTATACCGTTGCCGGCAAATTCCAACCGCTGCCTCAAGATATTTATCGCTACGATTGGAGGGAACCTTTCAGTCTACCGAGAGGGTGGCTTTTGTGGGCTGGGATTGGTCTTGTTGGTGCTGTAGCTGCTGTGGCATTGACAGGGGCTGCCACGTCCTTTTTCAGTGGGCAAACCCCAGAAAGAGAGAAACTGTCATCTTGTGGTTTTTCGAAGATCAAAGCTTTTGGGATGATATTGAGGATGGGCCAAGGCCTTTGGGTCCTCTTGGCTTACAACAGATCTTTTCCTGAGCAAAGACAGTGGTGGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abi

Protein Analysis

269

Amino Acids

30.31

Weight (kDa)

8.98

Isoelectric Point (pI)

39.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14270 AT1G14270 AT1G14270 AT1G14270
fragaria_vesca	FvH4_4g31430 FvH4_4g31430 FvH4_4g31430
malus_domestica	MD13G1072600.v1.1 MD16G1073400.v1.1
prunus_persica	Prupe.1G273600_v2.0.a1 Prupe.1G273600_v2.0.a1
pyrus_communis	pycom13g06510 pycom16g06350
rosa_chinensis	RchiOBHm_Chr4g0413061 RchiOBHm_Chr4g0439911
rosa_laevigata	RLG00000006227
rosa_multiflora	Rmu_sc0004020.1_g000003 Rmu_sc0022459.1_g000004
rosa_roxburghii	Rroxscaffold_1G00051590 Rroxscaffold_5G00380860 Rroxscaffold_7G00174140
rosa_rugosa	Rorug04G0322300
rosa_samantha	Rh1CG266600 Rh3CG366200 Rh4AG122400 Rh4AG373300 Rh4BG385600 Rh4CG400100 Rh4DG379900 Rh5AG410800 Rh7AG445800
rosa_wichuraiana	Rw4G031920 Rw7G025690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	500, 571
AciI	CCGC	3 cut(s)	161, 479, 524
AclWI	GGATC	3 cut(s)	129, 142, 222
AcoI	YGGCCR	1 cut(s)	480
AcsI	RAATTY	3 cut(s)	288, 372, 515
AcuI	CTGAAG	1 cut(s)	4
AfaI	GTAC	1 cut(s)	467
AfiI	CCNNNNNNNGG	2 cut(s)	144, 174
AgsI	TTSAA	2 cut(s)	156, 379
AjiI	CACGTC	1 cut(s)	651
AluBI	AGCT	3 cut(s)	299, 623, 719
AluI	AGCT	3 cut(s)	299, 623, 719
Alw26I	GTCTC	1 cut(s)	283
AlwI	GGATC	3 cut(s)	129, 142, 222
AlwNI	CAGNNNCTG	1 cut(s)	644
Ama87I	CYCGRG	1 cut(s)	300
AoxI	GGCC	3 cut(s)	480, 742, 748
ApeKI	GCWGC	4 cut(s)	456, 526, 623, 644
ApoI	RAATTY	3 cut(s)	288, 372, 515
ArsI	GACNNNNNNTTYG	2 cut(s)	37, 69
AspS9I	GGNCC	2 cut(s)	742, 757
AsuHPI	GGTGA	1 cut(s)	218
AsuII	TTCGAA	1 cut(s)	707
AvaI	CYCGRG	1 cut(s)	300
AvaII	GGWCC	1 cut(s)	757
BamHI	GGATCC	1 cut(s)	134
BbsI	GAAGAC	1 cut(s)	10
BbvI	GCAGC	4 cut(s)	468, 513, 610, 631
BccI	CCATC	3 cut(s)	28, 109, 733
BcgI	CGANNNNNNTGC	2 cut(s)	32, 66
BciVI	GTATCC	1 cut(s)	267
BcoDI	GTCTC	1 cut(s)	283
BfaI	CTAG	1 cut(s)	111
BfmI	CTRYAG	1 cut(s)	618
BfuI	GTATCC	1 cut(s)	267
BglII	AGATCT	1 cut(s)	776
BisI	GCNGC	5 cut(s)	457, 480, 527, 624, 645
BlsI	GCNGC	5 cut(s)	458, 481, 528, 625, 646
Bme18I	GGWCC	1 cut(s)	757
BmeT110I	CYCGRG	1 cut(s)	300
BmgBI	CACGTC	1 cut(s)	651
BmgT120I	GGNCC	2 cut(s)	742, 757
BmiI	GGNNCC	3 cut(s)	136, 561, 758
BmsI	GCATC	1 cut(s)	105
BpiI	GAAGAC	1 cut(s)	10
Bpu10I	CCTNAGC	1 cut(s)	786
Bpu14I	TTCGAA	1 cut(s)	707
BpuEI	CTTGAG	1 cut(s)	516
BsaBI	GATNNNNATC	1 cut(s)	540
BsaJI	CCNNGG	2 cut(s)	395, 745
Bsc4I	CCNNNNNNNGG	2 cut(s)	144, 174
Bse118I	RCCGGY	1 cut(s)	509
Bse1I	ACTGG	2 cut(s)	237, 432
Bse8I	GATNNNNATC	1 cut(s)	540
BseDI	CCNNGG	2 cut(s)	395, 745
BseGI	GGATG	4 cut(s)	96, 394, 732, 744
BseJI	GATNNNNATC	1 cut(s)	540
BseLI	CCNNNNNNNGG	2 cut(s)	144, 174
BseMII	CTCAG	6 cut(s)	44, 174, 234, 309, 431, 777
BseNI	ACTGG	2 cut(s)	237, 432
BseXI	GCAGC	4 cut(s)	468, 513, 610, 631
BseYI	CCCAGC	1 cut(s)	596
BshFI	GGCC	3 cut(s)	482, 744, 750
BsiHKCI	CYCGRG	1 cut(s)	300
BsiSI	CCGG	1 cut(s)	510
BslI	CCNNNNNNNGG	2 cut(s)	144, 174
BsmAI	GTCTC	1 cut(s)	283
BsnI	GGCC	3 cut(s)	482, 744, 750
BsoBI	CYCGRG	1 cut(s)	300
Bsp119I	TTCGAA	1 cut(s)	707
Bsp143I	GATC	4 cut(s)	134, 214, 711, 776
BspACI	CCGC	3 cut(s)	161, 479, 524
BspANI	GGCC	3 cut(s)	482, 744, 750
BspCNI	CTCAG	6 cut(s)	43, 175, 233, 308, 432, 778
BspLI	GGNNCC	3 cut(s)	136, 561, 758
BspPI	GGATC	3 cut(s)	129, 142, 222
BspT104I	TTCGAA	1 cut(s)	707
BsrFI	RCCGGY	1 cut(s)	509
BsrI	ACTGG	2 cut(s)	237, 432
BssAI	RCCGGY	1 cut(s)	509
BssECI	CCNNGG	2 cut(s)	395, 745
BssMI	GATC	4 cut(s)	134, 214, 711, 776
BssNAI	GTATAC	1 cut(s)	501
BssT1I	CCWWGG	2 cut(s)	395, 745
Bst1107I	GTATAC	1 cut(s)	501
Bst4CI	ACNGT	4 cut(s)	412, 505, 690, 798
Bst6I	CTCTTC	2 cut(s)	318, 374
BstBI	TTCGAA	1 cut(s)	707
BstC8I	GCNNGC	3 cut(s)	180, 368, 511
BstDEI	CTNAG	6 cut(s)	30, 183, 220, 295, 440, 786
BstENI	CCTNNNNNAGG	1 cut(s)	142
BstF5I	GGATG	4 cut(s)	96, 394, 732, 744
BstKTI	GATC	4 cut(s)	137, 217, 714, 779
BstMAI	GTCTC	1 cut(s)	283
BstMBI	GATC	4 cut(s)	134, 214, 711, 776
BstMWI	GCNNNNNNNGC	2 cut(s)	623, 629
BstSFI	CTRYAG	1 cut(s)	618
BstV1I	GCAGC	4 cut(s)	468, 513, 610, 631
BstV2I	GAAGAC	1 cut(s)	10
BstX2I	RGATCY	3 cut(s)	134, 214, 776
BstYI	RGATCY	3 cut(s)	134, 214, 776
BstZ17I	GTATAC	1 cut(s)	501
BsuI	GTATCC	1 cut(s)	267
BsuRI	GGCC	3 cut(s)	482, 744, 750
BtrI	CACGTC	1 cut(s)	651
BtsCI	GGATG	4 cut(s)	96, 394, 732, 744
BtsIMutI	CAGTG	4 cut(s)	417, 425, 667, 803
Cac8I	GCNNGC	3 cut(s)	180, 368, 511
CaiI	CAGNNNCTG	1 cut(s)	644
Cfr10I	RCCGGY	1 cut(s)	509
Cfr13I	GGNCC	2 cut(s)	742, 757
Csp6I	GTAC	1 cut(s)	466
CspCI	CAANNNNNGTGG	1 cut(s)	779
CviAII	CATG	1 cut(s)	14
CviQI	GTAC	1 cut(s)	466
DdeI	CTNAG	6 cut(s)	30, 183, 220, 295, 440, 786
DpnI	GATC	4 cut(s)	136, 216, 713, 778
DpnII	GATC	4 cut(s)	134, 214, 711, 776
EaeI	YGGCCR	1 cut(s)	480
Eam1104I	CTCTTC	2 cut(s)	318, 374
EarI	CTCTTC	2 cut(s)	318, 374
Eco130I	CCWWGG	2 cut(s)	395, 745
Eco147I	AGGCCT	1 cut(s)	750
Eco32I	GATATC	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	757
Eco57I	CTGAAG	1 cut(s)	4
Eco88I	CYCGRG	1 cut(s)	300
EcoNI	CCTNNNNNAGG	1 cut(s)	142
EcoO109I	RGGNCCY	1 cut(s)	757
EcoRV	GATATC	1 cut(s)	150
EcoT14I	CCWWGG	2 cut(s)	395, 745
ErhI	CCWWGG	2 cut(s)	395, 745
FaeI	CATG	1 cut(s)	17
FaiI	YATR	7 cut(s)	15, 59, 116, 275, 321, 485, 501
FatI	CATG	1 cut(s)	13
FblI	GTMKAC	2 cut(s)	500, 571
Fnu4HI	GCNGC	5 cut(s)	457, 480, 527, 624, 645
FokI	GGATG	4 cut(s)	83, 401, 739, 751
Fsp4HI	GCNGC	5 cut(s)	457, 480, 527, 624, 645
FspBI	CTAG	1 cut(s)	111
GluI	GCNGC	5 cut(s)	457, 480, 527, 624, 645
GsaI	CCCAGC	1 cut(s)	600
HaeIII	GGCC	3 cut(s)	482, 744, 750
HapII	CCGG	1 cut(s)	510
Hin1II	CATG	1 cut(s)	17
HindIII	AAGCTT	1 cut(s)	717
HinfI	GANTC	1 cut(s)	164
HpaII	CCGG	1 cut(s)	510
HphI	GGTGA	1 cut(s)	218
Hpy166II	GTNNAC	4 cut(s)	209, 437, 501, 572
Hpy188I	TCNGA	1 cut(s)	33
Hpy188III	TCNNGA	5 cut(s)	22, 199, 302, 533, 785
Hpy8I	GTNNAC	4 cut(s)	209, 437, 501, 572
HpyAV	CCTTC	1 cut(s)	353
HpyCH4III	ACNGT	4 cut(s)	412, 505, 690, 798
HpyCH4IV	ACGT	2 cut(s)	468, 650
HpyCH4V	TGCA	5 cut(s)	96, 124, 273, 347, 370
HpyF10VI	GCNNNNNNNGC	2 cut(s)	623, 629
HpyF3I	CTNAG	6 cut(s)	30, 183, 220, 295, 440, 786
HpySE526I	ACGT	2 cut(s)	468, 650
Hsp92II	CATG	1 cut(s)	17
KroI	GCCGGC	1 cut(s)	509
KroNI	GCCGGC	1 cut(s)	511
Kzo9I	GATC	4 cut(s)	134, 214, 711, 776
Lsp1109I	GCAGC	4 cut(s)	468, 513, 610, 631
LweI	GCATC	1 cut(s)	105
MaeI	CTAG	1 cut(s)	111
MaeII	ACGT	2 cut(s)	468, 650
MaeIII	GTNAC	1 cut(s)	469
MalI	GATC	4 cut(s)	136, 216, 713, 778
MboI	GATC	4 cut(s)	134, 214, 711, 776
MboII	GAAGA	7 cut(s)	10, 73, 144, 187, 335, 391, 721
MflI	RGATCY	3 cut(s)	134, 214, 776
MluCI	AATT	3 cut(s)	288, 372, 515
MmeI	TCCRAC	2 cut(s)	284, 544
MroNI	GCCGGC	1 cut(s)	509
MspA1I	CMGCKG	1 cut(s)	526
MspI	CCGG	1 cut(s)	510
MwoI	GCNNNNNNNGC	2 cut(s)	623, 629
NaeI	GCCGGC	1 cut(s)	511
NdeII	GATC	4 cut(s)	134, 214, 711, 776
NgoMIV	GCCGGC	1 cut(s)	509
NlaIII	CATG	1 cut(s)	17
NlaIV	GGNNCC	3 cut(s)	136, 561, 758
NspV	TTCGAA	1 cut(s)	707
PaeR7I	CTCGAG	1 cut(s)	300
PceI	AGGCCT	1 cut(s)	750
PdiI	GCCGGC	1 cut(s)	511
PfeI	GAWTC	1 cut(s)	164
PkrI	GCNGC	5 cut(s)	458, 481, 528, 625, 646
PpuMI	RGGWCCY	1 cut(s)	757
Psp5II	RGGWCCY	1 cut(s)	757
PspFI	CCCAGC	1 cut(s)	596
PspN4I	GGNNCC	3 cut(s)	136, 561, 758
PspPI	GGNCC	2 cut(s)	742, 757
PspPPI	RGGWCCY	1 cut(s)	757
PstNI	CAGNNNCTG	1 cut(s)	644
PsuI	RGATCY	3 cut(s)	134, 214, 776
RsaI	GTAC	1 cut(s)	467
RsaNI	GTAC	1 cut(s)	466
SatI	GCNGC	5 cut(s)	457, 480, 527, 624, 645
Sau3AI	GATC	4 cut(s)	134, 214, 711, 776
Sau96I	GGNCC	2 cut(s)	742, 757
SetI	ASST	9 cut(s)	112, 301, 330, 386, 471, 565, 625, 653, 721
SfaNI	GCATC	1 cut(s)	105
SfcI	CTRYAG	1 cut(s)	618
Sfr274I	CTCGAG	1 cut(s)	300
SfuI	TTCGAA	1 cut(s)	707
SinI	GGWCC	1 cut(s)	757
SlaI	CTCGAG	1 cut(s)	300
SmlI	CTYRAG	2 cut(s)	300, 531
SmoI	CTYRAG	2 cut(s)	300, 531
Sse9I	AATT	3 cut(s)	288, 372, 515
SseBI	AGGCCT	1 cut(s)	750
SsiI	CCGC	3 cut(s)	161, 479, 524
SspMI	CTAG	1 cut(s)	111
StuI	AGGCCT	1 cut(s)	750
StyI	CCWWGG	2 cut(s)	395, 745
TaaI	ACNGT	4 cut(s)	412, 505, 690, 798
TaiI	ACGT	2 cut(s)	471, 653
TaqI	TCGA	2 cut(s)	301, 707
TasI	AATT	3 cut(s)	288, 372, 515
TauI	GCSGC	1 cut(s)	482
TfiI	GAWTC	1 cut(s)	164
TscAI	CASTG	4 cut(s)	417, 432, 667, 803
TseI	GCWGC	4 cut(s)	456, 526, 623, 644
TspDTI	ATGAA	3 cut(s)	74, 336, 372
TspRI	CASTG	4 cut(s)	417, 432, 667, 803
VpaK11BI	GGWCC	1 cut(s)	757
XagI	CCTNNNNNAGG	1 cut(s)	142
XapI	RAATTY	3 cut(s)	288, 372, 515
XhoI	CTCGAG	1 cut(s)	300
XmiI	GTMKAC	2 cut(s)	500, 571
XspI	CTAG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.