Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0004201

Physical Location & Seq

Genomic Coordinates Forward (+)

53188485 .. 53197054

Gene Structure 8570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG266600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGTGCATCCCATCACTACCTAGTATGGTTTTGCACAGAACAGGATCCTGTGTTAGGATATCTTCAAATGCGAAGTCCCTTATCTGGCGTGCTGAGAGGCTTTTCTTCCTGAATGGTGAACATGATCTCTCAGCATTTCTACTGGTGGATTTGGGAATAGTCAAGTATCCAACTTACAAGTGCATAGTCTCACAACAAATTTTCTCAGCTCGAGATGATTTGCTTGGCTATGAAGAGGTGTCCTTTTATCTTTGTGCAAAAGAAAATGAAGGGGGCTTGCAAATTTTAAAGAGGTGGGATGTGCCTTGGGAATGGAAAACAGTGTCATTGACATCACTGGCTTGTGGACTGAGTTTTGTTTTGACAGGATTGGTAGAGGCAGCAGTTGTACCCTATTTAGGATTGAGCATTCAGGATTTGAGTCTAGATGAGAAGGCAGAGTTTTTGTTGGTTGCTCAAGGTGTTACGACTGCAGCCATACTTGGAGTTCTGTATACCATTGCCGGCAAATTCCAACCGTTGCCTCAAGATATTTATCGCTATGATTGGAGGGAACCTTTCAGTCTACCGAAAGGGTGGCTTTTGTGGGCTGGGATTGGTCTTGTTGGTGCTGTAGTTGCTGTGGCATTGACAGGGGCTGCCACGTCCTTTTTCAGTGGGCAAACCCCAGAAAGAGAGAAACTGTCATCTTGTGGCTTTCCGAAGATCAAAGCTTTTGGGATGATATTGAGGATGGGCCAAGGCCTTTGGGTCCTTTTGGCTTACAACAGCTCCCACACCATCTTGAAGTGGCCTAGGCGCCTCGATGATCTTCATTCTCGAAGCTCTATGGCCGGATGCATGGATGCTAACACAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abi

Protein Analysis

286

Amino Acids

31.69

Weight (kDa)

8.12

Isoelectric Point (pI)

36.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14270 AT1G14270 AT1G14270 AT1G14270
fragaria_vesca	FvH4_4g31430 FvH4_4g31430 FvH4_4g31430
malus_domestica	MD13G1072600.v1.1 MD16G1073400.v1.1
prunus_persica	Prupe.1G273600_v2.0.a1 Prupe.1G273600_v2.0.a1
pyrus_communis	pycom13g06510 pycom16g06350
rosa_chinensis	RchiOBHm_Chr4g0413061 RchiOBHm_Chr4g0439911
rosa_laevigata	RLG00000006227
rosa_multiflora	Rmu_sc0004020.1_g000003 Rmu_sc0022459.1_g000004
rosa_roxburghii	Rroxscaffold_1G00051590 Rroxscaffold_5G00380860 Rroxscaffold_7G00174140
rosa_rugosa	Rorug04G0322300
rosa_samantha	Rh1CG266600 Rh3CG366200 Rh4AG122400 Rh4AG373300 Rh4BG385600 Rh4CG400100 Rh4DG379900 Rh5AG410800 Rh7AG445800
rosa_wichuraiana	Rw4G031920 Rw7G025690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	798
AccI	GTMKAC	2 cut(s)	494, 565
AclWI	GGATC	2 cut(s)	39, 52
AcoI	YGGCCR	1 cut(s)	831
AcsI	RAATTY	3 cut(s)	198, 282, 509
AcyI	GRCGYC	1 cut(s)	799
AdeI	CACNNNGTG	1 cut(s)	858
AfaI	GTAC	1 cut(s)	390
AfiI	CCNNNNNNNGG	3 cut(s)	54, 84, 398
AgsI	TTSAA	2 cut(s)	66, 787
AjiI	CACGTC	1 cut(s)	645
AluBI	AGCT	4 cut(s)	209, 713, 771, 825
AluI	AGCT	4 cut(s)	209, 713, 771, 825
Alw26I	GTCTC	1 cut(s)	193
AlwI	GGATC	2 cut(s)	39, 52
AlwNI	CAGNNNCTG	1 cut(s)	638
Ama87I	CYCGRG	1 cut(s)	210
AoxI	GGCC	4 cut(s)	736, 742, 791, 831
ApeKI	GCWGC	3 cut(s)	380, 473, 638
ApoI	RAATTY	3 cut(s)	198, 282, 509
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
AspA2I	CCTAGG	1 cut(s)	794
AspLEI	GCGC	1 cut(s)	801
AspS9I	GGNCC	2 cut(s)	736, 751
AsuHPI	GGTGA	1 cut(s)	128
AvaI	CYCGRG	1 cut(s)	210
AvaII	GGWCC	1 cut(s)	751
AvrII	CCTAGG	1 cut(s)	794
BamHI	GGATCC	1 cut(s)	44
BanI	GGYRCC	1 cut(s)	798
BbvI	GCAGC	3 cut(s)	392, 485, 625
BccI	CCATC	3 cut(s)	19, 727, 788
BciVI	GTATCC	1 cut(s)	177
BcoDI	GTCTC	1 cut(s)	193
BfaI	CTAG	3 cut(s)	21, 425, 795
BfmI	CTRYAG	2 cut(s)	471, 612
BfoI	RGCGCY	1 cut(s)	802
BfuI	GTATCC	1 cut(s)	177
BisI	GCNGC	3 cut(s)	381, 474, 639
BlnI	CCTAGG	1 cut(s)	794
BlsI	GCNGC	3 cut(s)	382, 475, 640
Bme18I	GGWCC	1 cut(s)	751
BmeT110I	CYCGRG	1 cut(s)	210
BmgBI	CACGTC	1 cut(s)	645
BmgT120I	GGNCC	2 cut(s)	736, 751
BmiI	GGNNCC	4 cut(s)	46, 555, 752, 800
BmsI	GCATC	3 cut(s)	15, 827, 835
BpuEI	CTTGAG	2 cut(s)	441, 510
BsaBI	GATNNNNATC	1 cut(s)	534
BsaHI	GRCGYC	1 cut(s)	799
BsaJI	CCNNGG	3 cut(s)	305, 739, 794
BsaXI	ACNNNNNCTCC	2 cut(s)	755, 785
Bsc4I	CCNNNNNNNGG	3 cut(s)	54, 84, 398
Bse118I	RCCGGY	1 cut(s)	503
Bse1I	ACTGG	2 cut(s)	147, 342
Bse3DI	GCAATG	1 cut(s)	498
Bse8I	GATNNNNATC	1 cut(s)	534
BseDI	CCNNGG	3 cut(s)	305, 739, 794
BseGI	GGATG	6 cut(s)	6, 304, 726, 738, 842, 850
BseJI	GATNNNNATC	1 cut(s)	534
BseLI	CCNNNNNNNGG	3 cut(s)	54, 84, 398
BseMI	GCAATG	1 cut(s)	498
BseMII	CTCAG	4 cut(s)	84, 144, 219, 341
BseNI	ACTGG	2 cut(s)	147, 342
BseXI	GCAGC	3 cut(s)	392, 485, 625
BseYI	CCCAGC	1 cut(s)	590
BshFI	GGCC	4 cut(s)	738, 744, 793, 833
BshNI	GGYRCC	1 cut(s)	798
BsiHKCI	CYCGRG	1 cut(s)	210
BsiSI	CCGG	2 cut(s)	504, 834
BslFI	GGGAC	1 cut(s)	61
BslI	CCNNNNNNNGG	3 cut(s)	54, 84, 398
BsmAI	GTCTC	1 cut(s)	193
BsmFI	GGGAC	1 cut(s)	61
BsmI	GAATGC	1 cut(s)	408
BsnI	GGCC	4 cut(s)	738, 744, 793, 833
BsoBI	CYCGRG	1 cut(s)	210
Bsp143I	GATC	4 cut(s)	44, 124, 705, 808
BspANI	GGCC	4 cut(s)	738, 744, 793, 833
BspCNI	CTCAG	4 cut(s)	85, 143, 218, 342
BspLI	GGNNCC	4 cut(s)	46, 555, 752, 800
BspMAI	CTGCAG	1 cut(s)	475
BspPI	GGATC	2 cut(s)	39, 52
BspT107I	GGYRCC	1 cut(s)	798
BsrDI	GCAATG	1 cut(s)	498
BsrFI	RCCGGY	1 cut(s)	503
BsrI	ACTGG	2 cut(s)	147, 342
BssAI	RCCGGY	1 cut(s)	503
BssECI	CCNNGG	3 cut(s)	305, 739, 794
BssMI	GATC	4 cut(s)	44, 124, 705, 808
BssNAI	GTATAC	1 cut(s)	495
BssNI	GRCGYC	1 cut(s)	799
BssT1I	CCWWGG	3 cut(s)	305, 739, 794
Bst1107I	GTATAC	1 cut(s)	495
Bst4CI	ACNGT	3 cut(s)	322, 519, 684
Bst6I	CTCTTC	1 cut(s)	228
BstACI	GRCGYC	1 cut(s)	799
BstC8I	GCNNGC	3 cut(s)	90, 278, 505
BstDEI	CTNAG	4 cut(s)	93, 130, 205, 350
BstENI	CCTNNNNNAGG	1 cut(s)	52
BstF5I	GGATG	6 cut(s)	6, 304, 726, 738, 842, 850
BstH2I	RGCGCY	1 cut(s)	802
BstHHI	GCGC	1 cut(s)	801
BstKTI	GATC	4 cut(s)	47, 127, 708, 811
BstMAI	GTCTC	1 cut(s)	193
BstMBI	GATC	4 cut(s)	44, 124, 705, 808
BstMWI	GCNNNNNNNGC	1 cut(s)	617
BstSFI	CTRYAG	2 cut(s)	471, 612
BstV1I	GCAGC	3 cut(s)	392, 485, 625
BstX2I	RGATCY	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	44
BstZ17I	GTATAC	1 cut(s)	495
BsuI	GTATCC	1 cut(s)	177
BsuRI	GGCC	4 cut(s)	738, 744, 793, 833
BtrI	CACGTC	1 cut(s)	645
BtsCI	GGATG	6 cut(s)	6, 304, 726, 738, 842, 850
BtsIMutI	CAGTG	3 cut(s)	327, 335, 661
Cac8I	GCNNGC	3 cut(s)	90, 278, 505
CaiI	CAGNNNCTG	1 cut(s)	638
CfoI	GCGC	1 cut(s)	801
Cfr10I	RCCGGY	1 cut(s)	503
Cfr13I	GGNCC	2 cut(s)	736, 751
Csp6I	GTAC	1 cut(s)	389
CviAII	CATG	2 cut(s)	122, 841
CviQI	GTAC	1 cut(s)	389
DdeI	CTNAG	4 cut(s)	93, 130, 205, 350
DinI	GGCGCC	1 cut(s)	800
DpnI	GATC	4 cut(s)	46, 126, 707, 810
DpnII	GATC	4 cut(s)	44, 124, 705, 808
DraI	TTTAAA	1 cut(s)	288
DraIII	CACNNNGTG	1 cut(s)	858
EaeI	YGGCCR	1 cut(s)	831
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
Eco130I	CCWWGG	3 cut(s)	305, 739, 794
Eco147I	AGGCCT	1 cut(s)	744
Eco32I	GATATC	1 cut(s)	60
Eco47I	GGWCC	1 cut(s)	751
Eco88I	CYCGRG	1 cut(s)	210
EcoNI	CCTNNNNNAGG	1 cut(s)	52
EcoO109I	RGGNCCY	1 cut(s)	751
EcoRV	GATATC	1 cut(s)	60
EcoT14I	CCWWGG	3 cut(s)	305, 739, 794
EcoT22I	ATGCAT	1 cut(s)	842
EgeI	GGCGCC	1 cut(s)	800
EheI	GGCGCC	1 cut(s)	800
ErhI	CCWWGG	3 cut(s)	305, 739, 794
FaeI	CATG	2 cut(s)	125, 844
FaiI	YATR	9 cut(s)	26, 123, 185, 231, 479, 495, 543, 830, 842
FalI	AAGNNNNNCTT	2 cut(s)	564, 596
FaqI	GGGAC	1 cut(s)	61
FatI	CATG	2 cut(s)	121, 840
FblI	GTMKAC	2 cut(s)	494, 565
Fnu4HI	GCNGC	3 cut(s)	381, 474, 639
FokI	GGATG	5 cut(s)	311, 733, 745, 849, 857
Fsp4HI	GCNGC	3 cut(s)	381, 474, 639
FspBI	CTAG	3 cut(s)	21, 425, 795
GlaI	GCGC	1 cut(s)	800
GluI	GCNGC	3 cut(s)	381, 474, 639
GsaI	CCCAGC	1 cut(s)	594
HaeII	RGCGCY	1 cut(s)	802
HaeIII	GGCC	4 cut(s)	738, 744, 793, 833
HapII	CCGG	2 cut(s)	504, 834
HhaI	GCGC	1 cut(s)	801
Hin1I	GRCGYC	1 cut(s)	799
Hin1II	CATG	2 cut(s)	125, 844
Hin6I	GCGC	1 cut(s)	799
HinP1I	GCGC	1 cut(s)	799
HindIII	AAGCTT	1 cut(s)	711
HinfI	GANTC	1 cut(s)	421
HpaII	CCGG	2 cut(s)	504, 834
HphI	GGTGA	1 cut(s)	128
Hpy166II	GTNNAC	4 cut(s)	119, 347, 495, 566
Hpy188I	TCNGA	1 cut(s)	702
Hpy188III	TCNNGA	7 cut(s)	109, 212, 413, 425, 527, 784, 819
Hpy8I	GTNNAC	4 cut(s)	119, 347, 495, 566
HpyAV	CCTTC	2 cut(s)	263, 427
HpyCH4III	ACNGT	3 cut(s)	322, 519, 684
HpyCH4IV	ACGT	1 cut(s)	644
HpyCH4V	TGCA	7 cut(s)	6, 34, 183, 257, 280, 473, 840
HpyF10VI	GCNNNNNNNGC	1 cut(s)	617
HpyF3I	CTNAG	4 cut(s)	93, 130, 205, 350
HpySE526I	ACGT	1 cut(s)	644
Hsp92I	GRCGYC	1 cut(s)	799
Hsp92II	CATG	2 cut(s)	125, 844
HspAI	GCGC	1 cut(s)	799
KasI	GGCGCC	1 cut(s)	798
KroI	GCCGGC	1 cut(s)	503
KroNI	GCCGGC	1 cut(s)	505
Kzo9I	GATC	4 cut(s)	44, 124, 705, 808
LmnI	GCTCC	1 cut(s)	776
Lsp1109I	GCAGC	3 cut(s)	392, 485, 625
LweI	GCATC	3 cut(s)	15, 827, 835
MaeI	CTAG	3 cut(s)	21, 425, 795
MaeII	ACGT	1 cut(s)	644
MaeIII	GTNAC	1 cut(s)	463
MalI	GATC	4 cut(s)	46, 126, 707, 810
MboI	GATC	4 cut(s)	44, 124, 705, 808
MboII	GAAGA	5 cut(s)	54, 97, 245, 715, 803
MflI	RGATCY	1 cut(s)	44
MluCI	AATT	3 cut(s)	198, 282, 509
Mly113I	GGCGCC	1 cut(s)	799
MlyI	GAGTC	1 cut(s)	430
MmeI	TCCRAC	2 cut(s)	194, 538
MnlI	CCTC	8 cut(s)	90, 229, 285, 370, 534, 543, 723, 812
Mph1103I	ATGCAT	1 cut(s)	842
MroNI	GCCGGC	1 cut(s)	503
MseI	TTAA	1 cut(s)	287
MspI	CCGG	2 cut(s)	504, 834
Mva1269I	GAATGC	1 cut(s)	408
MwoI	GCNNNNNNNGC	1 cut(s)	617
NaeI	GCCGGC	1 cut(s)	505
NarI	GGCGCC	1 cut(s)	799
NdeII	GATC	4 cut(s)	44, 124, 705, 808
NgoMIV	GCCGGC	1 cut(s)	503
NlaIII	CATG	2 cut(s)	125, 844
NlaIV	GGNNCC	4 cut(s)	46, 555, 752, 800
NsiI	ATGCAT	1 cut(s)	842
PaeR7I	CTCGAG	1 cut(s)	210
PceI	AGGCCT	1 cut(s)	744
PctI	GAATGC	1 cut(s)	408
PdiI	GCCGGC	1 cut(s)	505
PkrI	GCNGC	3 cut(s)	382, 475, 640
PleI	GAGTC	1 cut(s)	429
PluTI	GGCGCC	1 cut(s)	802
PpsI	GAGTC	1 cut(s)	429
PpuMI	RGGWCCY	1 cut(s)	751
Psp5II	RGGWCCY	1 cut(s)	751
PspFI	CCCAGC	1 cut(s)	590
PspN4I	GGNNCC	4 cut(s)	46, 555, 752, 800
PspPI	GGNCC	2 cut(s)	736, 751
PspPPI	RGGWCCY	1 cut(s)	751
PstI	CTGCAG	1 cut(s)	475
PstNI	CAGNNNCTG	1 cut(s)	638
PsuI	RGATCY	1 cut(s)	44
RsaI	GTAC	1 cut(s)	390
RsaNI	GTAC	1 cut(s)	389
SaqAI	TTAA	1 cut(s)	287
SatI	GCNGC	3 cut(s)	381, 474, 639
Sau3AI	GATC	4 cut(s)	44, 124, 705, 808
Sau96I	GGNCC	2 cut(s)	736, 751
SchI	GAGTC	1 cut(s)	430
SfaNI	GCATC	3 cut(s)	15, 827, 835
SfcI	CTRYAG	2 cut(s)	471, 612
SfoI	GGCGCC	1 cut(s)	800
Sfr274I	CTCGAG	1 cut(s)	210
SinI	GGWCC	1 cut(s)	751
SlaI	CTCGAG	1 cut(s)	210
SmlI	CTYRAG	3 cut(s)	210, 456, 525
SmoI	CTYRAG	3 cut(s)	210, 456, 525
Sse9I	AATT	3 cut(s)	198, 282, 509
SseBI	AGGCCT	1 cut(s)	744
SspDI	GGCGCC	1 cut(s)	798
SspMI	CTAG	3 cut(s)	21, 425, 795
StuI	AGGCCT	1 cut(s)	744
StyI	CCWWGG	3 cut(s)	305, 739, 794
TaaI	ACNGT	3 cut(s)	322, 519, 684
TaiI	ACGT	1 cut(s)	647
TaqI	TCGA	3 cut(s)	211, 804, 820
TasI	AATT	3 cut(s)	198, 282, 509
Tru1I	TTAA	1 cut(s)	287
Tru9I	TTAA	1 cut(s)	287
TscAI	CASTG	3 cut(s)	327, 342, 661
TseI	GCWGC	3 cut(s)	380, 473, 638
TspDTI	ATGAA	3 cut(s)	246, 282, 803
TspRI	CASTG	3 cut(s)	327, 342, 661
VpaK11BI	GGWCC	1 cut(s)	751
XagI	CCTNNNNNAGG	1 cut(s)	52
XapI	RAATTY	3 cut(s)	198, 282, 509
XbaI	TCTAGA	1 cut(s)	424
XhoI	CTCGAG	1 cut(s)	210
XmaJI	CCTAGG	1 cut(s)	794
XmiI	GTMKAC	2 cut(s)	494, 565
XspI	CTAG	3 cut(s)	21, 425, 795
Zsp2I	ATGCAT	1 cut(s)	842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.