Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0004201

Physical Location & Seq

Genomic Coordinates Reverse (-)

60531762 .. 60532010

Gene Structure 249 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG445800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGAACTACTCTCATAACCTCTTCGGCGCTCAGTCCGGGCACCATCTCTTGATTAGCTTCGATCGATCCAACAAGTCCTCGGAGAAGCTCACCCACGTGGCCATGCCTACTCGAATAGCTTGTTCTCTGATCGAGTCCACCCAGTCGACTACTGAGTCCAATCAGTTGAATCCAATCAATGGCGGCACCCTCCGATTCCGGATTGCCGTCACCTCTGCCGAGGCCAATGGGCTCGGGCAACTAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

82

Amino Acids

8.89

Weight (kDa)

6.9

Isoelectric Point (pI)

53.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14270 AT1G14270 AT1G14270 AT1G14270
fragaria_vesca	FvH4_4g31430 FvH4_4g31430 FvH4_4g31430
malus_domestica	MD13G1072600.v1.1 MD16G1073400.v1.1
prunus_persica	Prupe.1G273600_v2.0.a1 Prupe.1G273600_v2.0.a1
pyrus_communis	pycom13g06510 pycom16g06350
rosa_chinensis	RchiOBHm_Chr4g0413061 RchiOBHm_Chr4g0439911
rosa_laevigata	RLG00000006227
rosa_multiflora	Rmu_sc0004020.1_g000003 Rmu_sc0022459.1_g000004
rosa_roxburghii	Rroxscaffold_1G00051590 Rroxscaffold_5G00380860 Rroxscaffold_7G00174140
rosa_rugosa	Rorug04G0322300
rosa_samantha	Rh1CG266600 Rh3CG366200 Rh4AG122400 Rh4AG373300 Rh4BG385600 Rh4CG400100 Rh4DG379900 Rh5AG410800 Rh7AG445800
rosa_wichuraiana	Rw4G031920 Rw7G025690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	154
AccB1I	GGYRCC	2 cut(s)	39, 185
AccB7I	CCANNNNNTGG	1 cut(s)	179
AccI	GTMKAC	1 cut(s)	146
AccIII	TCCGGA	1 cut(s)	198
AciI	CCGC	1 cut(s)	183
AclWI	GGATC	1 cut(s)	60
AcoI	YGGCCR	1 cut(s)	99
AcvI	CACGTG	1 cut(s)	97
AfiI	CCNNNNNNNGG	1 cut(s)	179
AgsI	TTSAA	1 cut(s)	169
AleI	CACNNNNGTG	1 cut(s)	95
AluBI	AGCT	3 cut(s)	57, 88, 119
AluI	AGCT	3 cut(s)	57, 88, 119
AlwI	GGATC	1 cut(s)	60
Ama87I	CYCGRG	1 cut(s)	233
Aor13HI	TCCGGA	1 cut(s)	198
AoxI	GGCC	2 cut(s)	99, 222
AspLEI	GCGC	1 cut(s)	29
AsuC2I	CCSGG	1 cut(s)	37
AsuHPI	GGTGA	2 cut(s)	82, 202
AvaI	CYCGRG	1 cut(s)	233
BaeGI	GKGCMC	1 cut(s)	42
BalI	TGGCCA	1 cut(s)	101
BanI	GGYRCC	2 cut(s)	39, 185
BanII	GRGCYC	1 cut(s)	234
BbrPI	CACGTG	1 cut(s)	97
BccI	CCATC	1 cut(s)	51
BceAI	ACGGC	1 cut(s)	191
BcnI	CCSGG	1 cut(s)	37
BfaI	CTAG	1 cut(s)	242
BfoI	RGCGCY	1 cut(s)	30
BisI	GCNGC	1 cut(s)	184
BlsI	GCNGC	1 cut(s)	185
Bme1390I	CCNGG	1 cut(s)	37
BmeT110I	CYCGRG	1 cut(s)	233
BmiI	GGNNCC	2 cut(s)	41, 187
BmrFI	CCNGG	1 cut(s)	37
BmrI	ACTGGG	1 cut(s)	136
BmuI	ACTGGG	1 cut(s)	136
BpuMI	CCSGG	1 cut(s)	37
Bsa29I	ATCGAT	1 cut(s)	64
BsaAI	YACGTR	1 cut(s)	97
BsaJI	CCNNGG	2 cut(s)	78, 219
BsaWI	WCCGGW	1 cut(s)	198
Bsc4I	CCNNNNNNNGG	1 cut(s)	179
Bse1I	ACTGG	1 cut(s)	142
BseAI	TCCGGA	1 cut(s)	198
BseCI	ATCGAT	1 cut(s)	64
BseDI	CCNNGG	2 cut(s)	78, 219
BseLI	CCNNNNNNNGG	1 cut(s)	179
BseMII	CTCAG	2 cut(s)	44, 144
BseNI	ACTGG	1 cut(s)	142
BseSI	GKGCMC	1 cut(s)	42
Bsh1285I	CGRYCG	1 cut(s)	64
BshFI	GGCC	2 cut(s)	101, 224
BshNI	GGYRCC	2 cut(s)	39, 185
BshVI	ATCGAT	1 cut(s)	64
BsiEI	CGRYCG	1 cut(s)	64
BsiHKCI	CYCGRG	1 cut(s)	233
BsiSI	CCGG	2 cut(s)	36, 199
BslI	CCNNNNNNNGG	1 cut(s)	179
BsnI	GGCC	2 cut(s)	101, 224
BsoBI	CYCGRG	1 cut(s)	233
Bsp1286I	GDGCHC	2 cut(s)	42, 234
Bsp13I	TCCGGA	1 cut(s)	198
Bsp143I	GATC	3 cut(s)	61, 65, 129
BspACI	CCGC	1 cut(s)	183
BspANI	GGCC	2 cut(s)	101, 224
BspCNI	CTCAG	2 cut(s)	43, 145
BspDI	ATCGAT	1 cut(s)	64
BspEI	TCCGGA	1 cut(s)	198
BspLI	GGNNCC	2 cut(s)	41, 187
BspPI	GGATC	1 cut(s)	60
BspT107I	GGYRCC	2 cut(s)	39, 185
BsrI	ACTGG	1 cut(s)	142
BssECI	CCNNGG	2 cut(s)	78, 219
BssMI	GATC	3 cut(s)	61, 65, 129
Bst6I	CTCTTC	1 cut(s)	26
BstBAI	YACGTR	1 cut(s)	97
BstDEI	CTNAG	2 cut(s)	30, 153
BstH2I	RGCGCY	1 cut(s)	30
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	3 cut(s)	64, 68, 132
BstMBI	GATC	3 cut(s)	61, 65, 129
BstMCI	CGRYCG	1 cut(s)	64
BstSCI	CCNGG	1 cut(s)	35
BstSLI	GKGCMC	1 cut(s)	42
Bsu15I	ATCGAT	1 cut(s)	64
BsuRI	GGCC	2 cut(s)	101, 224
BsuTUI	ATCGAT	1 cut(s)	64
CfoI	GCGC	1 cut(s)	29
ClaI	ATCGAT	1 cut(s)	64
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	6 cut(s)	57, 88, 101, 119, 224, 232
CviKI_1	RGCY	6 cut(s)	57, 88, 101, 119, 224, 232
DdeI	CTNAG	2 cut(s)	30, 153
DpnI	GATC	3 cut(s)	63, 67, 131
DpnII	GATC	3 cut(s)	61, 65, 129
DrdI	GACNNNNNNGTC	1 cut(s)	154
DseDI	GACNNNNNNGTC	1 cut(s)	154
EaeI	YGGCCR	1 cut(s)	99
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
Eco24I	GRGCYC	1 cut(s)	234
Eco72I	CACGTG	1 cut(s)	97
Eco88I	CYCGRG	1 cut(s)	233
EcoT38I	GRGCYC	1 cut(s)	234
FaeI	CATG	1 cut(s)	106
FaiI	YATR	2 cut(s)	15, 104
FatI	CATG	1 cut(s)	102
FblI	GTMKAC	1 cut(s)	146
Fnu4HI	GCNGC	1 cut(s)	184
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	1 cut(s)	184
FspBI	CTAG	1 cut(s)	242
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	1 cut(s)	184
HaeII	RGCGCY	1 cut(s)	30
HaeIII	GGCC	2 cut(s)	101, 224
HapII	CCGG	2 cut(s)	36, 199
HhaI	GCGC	1 cut(s)	29
Hin1II	CATG	1 cut(s)	106
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HincII	GTYRAC	1 cut(s)	147
HindII	GTYRAC	1 cut(s)	147
HinfI	GANTC	4 cut(s)	134, 155, 169, 195
HpaII	CCGG	2 cut(s)	36, 199
HphI	GGTGA	2 cut(s)	82, 202
Hpy166II	GTNNAC	2 cut(s)	138, 147
Hpy188I	TCNGA	3 cut(s)	82, 129, 194
Hpy188III	TCNNGA	2 cut(s)	49, 199
Hpy8I	GTNNAC	2 cut(s)	138, 147
HpyCH4IV	ACGT	1 cut(s)	96
HpyF3I	CTNAG	2 cut(s)	30, 153
HpySE526I	ACGT	1 cut(s)	96
Hsp92II	CATG	1 cut(s)	106
HspAI	GCGC	1 cut(s)	27
Kpn2I	TCCGGA	1 cut(s)	198
Kzo9I	GATC	3 cut(s)	61, 65, 129
LpnPI	CCDG	3 cut(s)	49, 155, 212
MaeI	CTAG	1 cut(s)	242
MaeII	ACGT	1 cut(s)	96
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	3 cut(s)	63, 67, 131
MboI	GATC	3 cut(s)	61, 65, 129
MboII	GAAGA	1 cut(s)	13
MhlI	GDGCHC	2 cut(s)	42, 234
MlsI	TGGCCA	1 cut(s)	101
MluNI	TGGCCA	1 cut(s)	101
MlyI	GAGTC	2 cut(s)	143, 164
MmeI	TCCRAC	1 cut(s)	93
MnlI	CCTC	5 cut(s)	29, 88, 200, 214, 223
Mox20I	TGGCCA	1 cut(s)	101
MroI	TCCGGA	1 cut(s)	198
MscI	TGGCCA	1 cut(s)	101
MslI	CAYNNNNRTG	1 cut(s)	95
Msp20I	TGGCCA	1 cut(s)	101
MspI	CCGG	2 cut(s)	36, 199
MspR9I	CCNGG	1 cut(s)	37
NciI	CCSGG	1 cut(s)	37
NdeII	GATC	3 cut(s)	61, 65, 129
NlaIII	CATG	1 cut(s)	106
NlaIV	GGNNCC	2 cut(s)	41, 187
NmeAIII	GCCGAG	1 cut(s)	244
NmuCI	GTSAC	1 cut(s)	208
OliI	CACNNNNGTG	1 cut(s)	95
PfeI	GAWTC	2 cut(s)	169, 195
PflMI	CCANNNNNTGG	1 cut(s)	179
PkrI	GCNGC	1 cut(s)	185
Ple19I	CGATCG	1 cut(s)	64
PleI	GAGTC	2 cut(s)	142, 163
PmaCI	CACGTG	1 cut(s)	97
PmlI	CACGTG	1 cut(s)	97
PpsI	GAGTC	2 cut(s)	142, 163
Ppu21I	YACGTR	1 cut(s)	97
PspCI	CACGTG	1 cut(s)	97
PspN4I	GGNNCC	2 cut(s)	41, 187
PvuI	CGATCG	1 cut(s)	64
RseI	CAYNNNNRTG	1 cut(s)	95
SalI	GTCGAC	1 cut(s)	145
SatI	GCNGC	1 cut(s)	184
Sau3AI	GATC	3 cut(s)	61, 65, 129
SchI	GAGTC	2 cut(s)	143, 164
ScrFI	CCNGG	1 cut(s)	37
SduI	GDGCHC	2 cut(s)	42, 234
SetI	ASST	6 cut(s)	21, 59, 90, 99, 121, 215
SmiMI	CAYNNNNRTG	1 cut(s)	95
SsiI	CCGC	1 cut(s)	183
SspMI	CTAG	1 cut(s)	242
StyD4I	CCNGG	1 cut(s)	35
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	5 cut(s)	60, 64, 112, 132, 146
TauI	GCSGC	1 cut(s)	186
TfiI	GAWTC	2 cut(s)	169, 195
TseFI	GTSAC	1 cut(s)	208
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	1 cut(s)	17
Van91I	CCANNNNNTGG	1 cut(s)	179
XmiI	GTMKAC	1 cut(s)	146
XspI	CTAG	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.