Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0004201

Physical Location & Seq

Genomic Coordinates Reverse (-)

59783209 .. 59787075

Gene Structure 3867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG379900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGTTTACACCCTCTTCACATCTCTAGCTCAATCCCCCCTTCCCACTTTCTCACACACCCCCTACTTAAATCCCTCCAAAACCTTCCTCAAGCGAACCCACACACTTTTCCTCAATGGTCACACCAGGTCAAACCACCTCTCACGGCTCAGAACCACCAGGCCGCCGCCTCATGTCTGCTTTTTCAGCGGCGGAGGAAGACCCAGACCCGATTTCCAAGAAAAGGAAAATGAAGGGGGCTTGCAAATTTTGAAGAGGTGGGATGTGCCTTGGGAATGGCAAACAGTGTCATTGACATCACTGGCTTGTGGGCTGAGTTTTGTTTTGACAGGATTGGTAGAGGCAGCACTTGTACCCTATTTAGGATTGAGCATTCAGGATTTGAGTCTTGATGAGAAGGCAGAGTTTCTGTTGGTTGCTCAAGGTGTTACGACTGCAGCCATACTTGGAGTTCTGTATACCGTTGCCGGCAAATTCCAACCGCTGCCTCAAGATATTTATCGCTATGATTGGAGGGAACCTTTCAGTCTACAGAGAGGGTGGCTTTTGTGGGCTGGGATTGGTCTTGTTGGTGCTGTTGCTGCTGTGGCATTGACAGGGGCTGCCACGTCCTTTTTCAGTGGGCAAACCCCAGAAAGAGAGGTTTGGAGTGTTCATCTGATAATTTCTTTTTTCATTATAAAGTGCAGTGCACTCAATTCCTTATTCGCTCATGAAAGTGAATTGTCACTGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abi

Protein Analysis

245

Amino Acids

27.2

Weight (kDa)

7.79

Isoelectric Point (pI)

38.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14270 AT1G14270 AT1G14270 AT1G14270
fragaria_vesca	FvH4_4g31430 FvH4_4g31430 FvH4_4g31430
malus_domestica	MD13G1072600.v1.1 MD16G1073400.v1.1
prunus_persica	Prupe.1G273600_v2.0.a1 Prupe.1G273600_v2.0.a1
pyrus_communis	pycom13g06510 pycom16g06350
rosa_chinensis	RchiOBHm_Chr4g0413061 RchiOBHm_Chr4g0439911
rosa_laevigata	RLG00000006227
rosa_multiflora	Rmu_sc0004020.1_g000003 Rmu_sc0022459.1_g000004
rosa_roxburghii	Rroxscaffold_1G00051590 Rroxscaffold_5G00380860 Rroxscaffold_7G00174140
rosa_rugosa	Rorug04G0322300
rosa_samantha	Rh1CG266600 Rh3CG366200 Rh4AG122400 Rh4AG373300 Rh4BG385600 Rh4CG400100 Rh4DG379900 Rh5AG410800 Rh7AG445800
rosa_wichuraiana	Rw4G031920 Rw7G025690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	680
AccI	GTMKAC	2 cut(s)	458, 529
AciI	CCGC	5 cut(s)	164, 167, 189, 192, 482
AcsI	RAATTY	2 cut(s)	246, 473
AfaI	GTAC	1 cut(s)	354
AfiI	CCNNNNNNNGG	2 cut(s)	223, 362
AgsI	TTSAA	1 cut(s)	253
AjiI	CACGTC	1 cut(s)	609
AjnI	CCWGG	2 cut(s)	125, 158
AluBI	AGCT	1 cut(s)	29
AluI	AGCT	1 cut(s)	29
Alw21I	GWGCWC	1 cut(s)	694
Alw44I	GTGCAC	1 cut(s)	690
AlwNI	CAGNNNCTG	1 cut(s)	602
AoxI	GGCC	1 cut(s)	161
ApaLI	GTGCAC	1 cut(s)	690
ApeKI	GCWGC	5 cut(s)	344, 437, 484, 581, 602
ApoI	RAATTY	2 cut(s)	246, 473
BaeGI	GKGCMC	1 cut(s)	694
BbsI	GAAGAC	1 cut(s)	205
Bbv12I	GWGCWC	1 cut(s)	694
BbvI	GCAGC	5 cut(s)	356, 449, 471, 568, 589
BceAI	ACGGC	1 cut(s)	161
BciT130I	CCWGG	2 cut(s)	127, 160
BfaI	CTAG	1 cut(s)	26
BfmI	CTRYAG	2 cut(s)	435, 530
BisI	GCNGC	8 cut(s)	164, 167, 190, 345, 438, 485, 582, 603
BlsI	GCNGC	8 cut(s)	165, 168, 191, 346, 439, 486, 583, 604
Bme1390I	CCNGG	2 cut(s)	127, 160
BmgBI	CACGTC	1 cut(s)	609
BmiI	GGNNCC	1 cut(s)	519
BmrFI	CCNGG	2 cut(s)	127, 160
BpiI	GAAGAC	1 cut(s)	205
BpuEI	CTTGAG	3 cut(s)	74, 405, 474
BsaBI	GATNNNNATC	1 cut(s)	498
BsaJI	CCNNGG	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	2 cut(s)	223, 362
Bse118I	RCCGGY	1 cut(s)	467
Bse1I	ACTGG	1 cut(s)	306
Bse8I	GATNNNNATC	1 cut(s)	498
BseBI	CCWGG	2 cut(s)	127, 160
BseDI	CCNNGG	1 cut(s)	269
BseGI	GGATG	1 cut(s)	268
BseJI	GATNNNNATC	1 cut(s)	498
BseLI	CCNNNNNNNGG	2 cut(s)	223, 362
BseMII	CTCAG	3 cut(s)	163, 305, 722
BseNI	ACTGG	1 cut(s)	306
BseSI	GKGCMC	1 cut(s)	694
BseXI	GCAGC	5 cut(s)	356, 449, 471, 568, 589
BseYI	CCCAGC	1 cut(s)	554
BsgI	GTGCAG	1 cut(s)	706
BshFI	GGCC	1 cut(s)	163
BsiHKAI	GWGCWC	1 cut(s)	694
BsiSI	CCGG	1 cut(s)	468
BslI	CCNNNNNNNGG	2 cut(s)	223, 362
BsmI	GAATGC	1 cut(s)	372
BsnI	GGCC	1 cut(s)	163
Bsp1286I	GDGCHC	1 cut(s)	694
BspACI	CCGC	5 cut(s)	164, 167, 189, 192, 482
BspANI	GGCC	1 cut(s)	163
BspCNI	CTCAG	3 cut(s)	162, 306, 723
BspHI	TCATGA	1 cut(s)	712
BspLI	GGNNCC	1 cut(s)	519
BspMAI	CTGCAG	1 cut(s)	439
BsrFI	RCCGGY	1 cut(s)	467
BsrI	ACTGG	1 cut(s)	306
BssAI	RCCGGY	1 cut(s)	467
BssECI	CCNNGG	1 cut(s)	269
BssNAI	GTATAC	1 cut(s)	459
BssT1I	CCWWGG	1 cut(s)	269
Bst1107I	GTATAC	1 cut(s)	459
Bst2UI	CCWGG	2 cut(s)	127, 160
Bst4CI	ACNGT	2 cut(s)	286, 463
Bst6I	CTCTTC	2 cut(s)	20, 248
BstC8I	GCNNGC	2 cut(s)	242, 469
BstDEI	CTNAG	3 cut(s)	149, 314, 731
BstF5I	GGATG	1 cut(s)	268
BstMWI	GCNNNNNNNGC	3 cut(s)	186, 581, 587
BstNI	CCWGG	2 cut(s)	127, 160
BstSCI	CCNGG	2 cut(s)	125, 158
BstSFI	CTRYAG	2 cut(s)	435, 530
BstSLI	GKGCMC	1 cut(s)	694
BstV1I	GCAGC	5 cut(s)	356, 449, 471, 568, 589
BstV2I	GAAGAC	1 cut(s)	205
BstZ17I	GTATAC	1 cut(s)	459
BsuRI	GGCC	1 cut(s)	163
BtrI	CACGTC	1 cut(s)	609
BtsCI	GGATG	1 cut(s)	268
BtsI	GCAGTG	1 cut(s)	694
BtsIMutI	CAGTG	5 cut(s)	291, 299, 625, 694, 728
Cac8I	GCNNGC	2 cut(s)	242, 469
CaiI	CAGNNNCTG	1 cut(s)	602
CciI	TCATGA	1 cut(s)	712
Cfr10I	RCCGGY	1 cut(s)	467
CsiI	ACCWGGT	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	353
CviAII	CATG	2 cut(s)	173, 713
CviQI	GTAC	1 cut(s)	353
DdeI	CTNAG	3 cut(s)	149, 314, 731
Eam1104I	CTCTTC	2 cut(s)	20, 248
EarI	CTCTTC	2 cut(s)	20, 248
EciI	GGCGGA	1 cut(s)	207
Eco130I	CCWWGG	1 cut(s)	269
EcoRII	CCWGG	2 cut(s)	125, 158
EcoT14I	CCWWGG	1 cut(s)	269
ErhI	CCWWGG	1 cut(s)	269
FaeI	CATG	2 cut(s)	176, 716
FaiI	YATR	6 cut(s)	174, 443, 459, 507, 680, 714
FatI	CATG	2 cut(s)	172, 712
FblI	GTMKAC	2 cut(s)	458, 529
Fnu4HI	GCNGC	8 cut(s)	164, 167, 190, 345, 438, 485, 582, 603
FokI	GGATG	1 cut(s)	275
Fsp4HI	GCNGC	8 cut(s)	164, 167, 190, 345, 438, 485, 582, 603
FspBI	CTAG	1 cut(s)	26
GluI	GCNGC	8 cut(s)	164, 167, 190, 345, 438, 485, 582, 603
GsaI	CCCAGC	1 cut(s)	558
HaeIII	GGCC	1 cut(s)	163
HapII	CCGG	1 cut(s)	468
Hin1II	CATG	2 cut(s)	176, 716
HinfI	GANTC	1 cut(s)	385
HpaII	CCGG	1 cut(s)	468
Hpy166II	GTNNAC	4 cut(s)	7, 459, 530, 692
Hpy188I	TCNGA	2 cut(s)	152, 660
Hpy188III	TCNNGA	4 cut(s)	377, 389, 491, 713
Hpy8I	GTNNAC	4 cut(s)	7, 459, 530, 692
HpyAV	CCTTC	4 cut(s)	50, 94, 227, 391
HpyCH4III	ACNGT	2 cut(s)	286, 463
HpyCH4IV	ACGT	1 cut(s)	608
HpyCH4V	TGCA	4 cut(s)	244, 437, 687, 692
HpyF10VI	GCNNNNNNNGC	3 cut(s)	186, 581, 587
HpyF3I	CTNAG	3 cut(s)	149, 314, 731
HpySE526I	ACGT	1 cut(s)	608
Hsp92II	CATG	2 cut(s)	176, 716
KroI	GCCGGC	1 cut(s)	467
KroNI	GCCGGC	1 cut(s)	469
Lsp1109I	GCAGC	5 cut(s)	356, 449, 471, 568, 589
MabI	ACCWGGT	1 cut(s)	125
MaeI	CTAG	1 cut(s)	26
MaeII	ACGT	1 cut(s)	608
MaeIII	GTNAC	3 cut(s)	119, 427, 726
MboII	GAAGA	3 cut(s)	7, 210, 265
MhlI	GDGCHC	1 cut(s)	694
MluCI	AATT	5 cut(s)	246, 473, 663, 697, 722
MlyI	GAGTC	1 cut(s)	394
MmeI	TCCRAC	1 cut(s)	502
MroNI	GCCGGC	1 cut(s)	467
MseI	TTAA	1 cut(s)	68
MslI	CAYNNNNRTG	1 cut(s)	717
MspA1I	CMGCKG	2 cut(s)	189, 484
MspI	CCGG	1 cut(s)	468
MspR9I	CCNGG	2 cut(s)	127, 160
Mva1269I	GAATGC	1 cut(s)	372
MvaI	CCWGG	2 cut(s)	127, 160
MwoI	GCNNNNNNNGC	3 cut(s)	186, 581, 587
NaeI	GCCGGC	1 cut(s)	469
NgoMIV	GCCGGC	1 cut(s)	467
NlaIII	CATG	2 cut(s)	176, 716
NlaIV	GGNNCC	1 cut(s)	519
NmuCI	GTSAC	2 cut(s)	119, 726
PagI	TCATGA	1 cut(s)	712
PctI	GAATGC	1 cut(s)	372
PdiI	GCCGGC	1 cut(s)	469
PkrI	GCNGC	8 cut(s)	165, 168, 191, 346, 439, 486, 583, 604
PleI	GAGTC	1 cut(s)	393
PpsI	GAGTC	1 cut(s)	393
PsiI	TTATAA	1 cut(s)	680
Psp6I	CCWGG	2 cut(s)	125, 158
PspFI	CCCAGC	1 cut(s)	554
PspGI	CCWGG	2 cut(s)	125, 158
PspN4I	GGNNCC	1 cut(s)	519
PstI	CTGCAG	1 cut(s)	439
PstNI	CAGNNNCTG	1 cut(s)	602
RsaI	GTAC	1 cut(s)	354
RsaNI	GTAC	1 cut(s)	353
RseI	CAYNNNNRTG	1 cut(s)	717
SaqAI	TTAA	1 cut(s)	68
SatI	GCNGC	8 cut(s)	164, 167, 190, 345, 438, 485, 582, 603
SchI	GAGTC	1 cut(s)	394
ScrFI	CCNGG	2 cut(s)	127, 160
SduI	GDGCHC	1 cut(s)	694
SetI	ASST	9 cut(s)	31, 86, 131, 141, 260, 427, 523, 611, 645
SexAI	ACCWGGT	1 cut(s)	125
SfcI	CTRYAG	2 cut(s)	435, 530
SmiMI	CAYNNNNRTG	1 cut(s)	717
SmlI	CTYRAG	3 cut(s)	89, 420, 489
SmoI	CTYRAG	3 cut(s)	89, 420, 489
Sse9I	AATT	5 cut(s)	246, 473, 663, 697, 722
SsiI	CCGC	5 cut(s)	164, 167, 189, 192, 482
SspMI	CTAG	1 cut(s)	26
StyD4I	CCNGG	2 cut(s)	125, 158
StyI	CCWWGG	1 cut(s)	269
TaaI	ACNGT	2 cut(s)	286, 463
TaiI	ACGT	1 cut(s)	611
TasI	AATT	5 cut(s)	246, 473, 663, 697, 722
TauI	GCSGC	3 cut(s)	166, 169, 192
Tru1I	TTAA	1 cut(s)	68
Tru9I	TTAA	1 cut(s)	68
TscAI	CASTG	5 cut(s)	291, 306, 625, 694, 735
TseFI	GTSAC	2 cut(s)	119, 726
TseI	GCWGC	5 cut(s)	344, 437, 484, 581, 602
Tsp45I	GTSAC	2 cut(s)	119, 726
TspDTI	ATGAA	4 cut(s)	246, 644, 664, 729
TspRI	CASTG	5 cut(s)	291, 306, 625, 694, 735
VneI	GTGCAC	1 cut(s)	690
XapI	RAATTY	2 cut(s)	246, 473
XmiI	GTMKAC	2 cut(s)	458, 529
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.