Rh3CG366200

CAAX protease self-immunity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0004201
Physical Location & Seq
Reverse (-)
46087832 .. 46089820
1989 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG366200.1

Sequence Viewer

Length: 387 bp
ATGATGCCTCCAGATATAAAGAGCTTTGCTTCAGTAGGATTCAATAGTTGCAGCAAGATTGGCTGTGAGAGGTGTTACGACTGCAGCCATACTATGTTATCGGCAAATTCCAACCGCTGCCTCAAGATATTTATCGCTATGGTACTAGTCCTTTATTGGAGGGAACCTTTCAGTCTACCGAGAGGGTGGCTTTTGTGGGCTGGGATTGGTCTTGTTGGTGTTGTAGTTGCTGTGGCATTGACAGGGGCTGCCACGTCCTTTTTCAGTGGGCAAACCCCAGAAAGAGAGAAACTGTCATCTTGTGGCTTTCCGAAGATCAAAGCTTTTGGGATGATATTGAGGATGGGCCAAGGCCTTTGGGTCCTTTTGGCTTACAACAGGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abi

Protein Analysis

128

Amino Acids

14.1

Weight (kDa)

9.38

Isoelectric Point (pI)

27.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 175
AciI CCGC 1 cut(s) 115
AcsI RAATTY 1 cut(s) 106
AcuI CTGAAG 1 cut(s) 15
AfaI GTAC 1 cut(s) 144
AgsI TTSAA 1 cut(s) 43
AhlI ACTAGT 1 cut(s) 145
AjiI CACGTC 1 cut(s) 255
AluBI AGCT 2 cut(s) 24, 323
AluI AGCT 2 cut(s) 24, 323
AlwNI CAGNNNCTG 1 cut(s) 248
AoxI GGCC 2 cut(s) 346, 352
ApeKI GCWGC 4 cut(s) 51, 84, 117, 248
ApoI RAATTY 1 cut(s) 106
AspS9I GGNCC 2 cut(s) 346, 361
AvaII GGWCC 1 cut(s) 361
BbvI GCAGC 4 cut(s) 63, 96, 104, 235
BccI CCATC 1 cut(s) 337
BcuI ACTAGT 1 cut(s) 145
BfaI CTAG 1 cut(s) 146
BfmI CTRYAG 1 cut(s) 82
BisI GCNGC 4 cut(s) 52, 85, 118, 249
BlsI GCNGC 4 cut(s) 53, 86, 119, 250
Bme18I GGWCC 1 cut(s) 361
BmgBI CACGTC 1 cut(s) 255
BmgT120I GGNCC 2 cut(s) 346, 361
BmiI GGNNCC 2 cut(s) 165, 362
BpuEI CTTGAG 1 cut(s) 107
BsaBI GATNNNNATC 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 349
Bse8I GATNNNNATC 1 cut(s) 131
BseDI CCNNGG 1 cut(s) 349
BseGI GGATG 2 cut(s) 336, 348
BseJI GATNNNNATC 1 cut(s) 131
BseXI GCAGC 4 cut(s) 63, 96, 104, 235
BseYI CCCAGC 1 cut(s) 200
BshFI GGCC 2 cut(s) 348, 354
BsnI GGCC 2 cut(s) 348, 354
Bsp143I GATC 1 cut(s) 315
BspACI CCGC 1 cut(s) 115
BspANI GGCC 2 cut(s) 348, 354
BspLI GGNNCC 2 cut(s) 165, 362
BspMAI CTGCAG 1 cut(s) 86
BssECI CCNNGG 1 cut(s) 349
BssMI GATC 1 cut(s) 315
BssT1I CCWWGG 1 cut(s) 349
Bst4CI ACNGT 1 cut(s) 294
BstF5I GGATG 2 cut(s) 336, 348
BstKTI GATC 1 cut(s) 318
BstMBI GATC 1 cut(s) 315
BstMWI GCNNNNNNNGC 1 cut(s) 60
BstSFI CTRYAG 1 cut(s) 82
BstV1I GCAGC 4 cut(s) 63, 96, 104, 235
BsuRI GGCC 2 cut(s) 348, 354
BtrI CACGTC 1 cut(s) 255
BtsCI GGATG 2 cut(s) 336, 348
BtsIMutI CAGTG 1 cut(s) 271
CaiI CAGNNNCTG 1 cut(s) 248
Cfr13I GGNCC 2 cut(s) 346, 361
Csp6I GTAC 1 cut(s) 143
CviQI GTAC 1 cut(s) 143
DpnI GATC 1 cut(s) 317
DpnII GATC 1 cut(s) 315
Eco130I CCWWGG 1 cut(s) 349
Eco147I AGGCCT 1 cut(s) 354
Eco47I GGWCC 1 cut(s) 361
Eco57I CTGAAG 1 cut(s) 15
EcoO109I RGGNCCY 1 cut(s) 361
EcoT14I CCWWGG 1 cut(s) 349
ErhI CCWWGG 1 cut(s) 349
FaiI YATR 4 cut(s) 17, 90, 95, 140
FblI GTMKAC 1 cut(s) 175
Fnu4HI GCNGC 4 cut(s) 52, 85, 118, 249
FokI GGATG 2 cut(s) 343, 355
Fsp4HI GCNGC 4 cut(s) 52, 85, 118, 249
FspBI CTAG 1 cut(s) 146
GluI GCNGC 4 cut(s) 52, 85, 118, 249
GsaI CCCAGC 1 cut(s) 204
HaeIII GGCC 2 cut(s) 348, 354
HindIII AAGCTT 1 cut(s) 321
HinfI GANTC 1 cut(s) 39
Hpy166II GTNNAC 1 cut(s) 176
Hpy188I TCNGA 1 cut(s) 312
Hpy188III TCNNGA 2 cut(s) 11, 124
Hpy8I GTNNAC 1 cut(s) 176
HpyCH4III ACNGT 1 cut(s) 294
HpyCH4IV ACGT 1 cut(s) 254
HpyCH4V TGCA 2 cut(s) 51, 84
HpyF10VI GCNNNNNNNGC 1 cut(s) 60
HpySE526I ACGT 1 cut(s) 254
Kzo9I GATC 1 cut(s) 315
LpnPI CCDG 5 cut(s) 24, 186, 228, 291, 364
Lsp1109I GCAGC 4 cut(s) 63, 96, 104, 235
MaeI CTAG 1 cut(s) 146
MaeII ACGT 1 cut(s) 254
MaeIII GTNAC 1 cut(s) 74
MalI GATC 1 cut(s) 317
MboI GATC 1 cut(s) 315
MboII GAAGA 1 cut(s) 325
MluCI AATT 1 cut(s) 106
MmeI TCCRAC 1 cut(s) 135
MnlI CCTC 6 cut(s) 18, 63, 131, 153, 176, 333
MspA1I CMGCKG 1 cut(s) 117
MwoI GCNNNNNNNGC 1 cut(s) 60
NdeII GATC 1 cut(s) 315
NlaIV GGNNCC 2 cut(s) 165, 362
PceI AGGCCT 1 cut(s) 354
PfeI GAWTC 1 cut(s) 39
PkrI GCNGC 4 cut(s) 53, 86, 119, 250
PpuMI RGGWCCY 1 cut(s) 361
Psp5II RGGWCCY 1 cut(s) 361
PspFI CCCAGC 1 cut(s) 200
PspN4I GGNNCC 2 cut(s) 165, 362
PspPI GGNCC 2 cut(s) 346, 361
PspPPI RGGWCCY 1 cut(s) 361
PstI CTGCAG 1 cut(s) 86
PstNI CAGNNNCTG 1 cut(s) 248
RsaI GTAC 1 cut(s) 144
RsaNI GTAC 1 cut(s) 143
SatI GCNGC 4 cut(s) 52, 85, 118, 249
Sau3AI GATC 1 cut(s) 315
Sau96I GGNCC 2 cut(s) 346, 361
SetI ASST 5 cut(s) 26, 74, 169, 257, 325
SfcI CTRYAG 1 cut(s) 82
SinI GGWCC 1 cut(s) 361
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
SpeI ACTAGT 1 cut(s) 145
Sse9I AATT 1 cut(s) 106
SseBI AGGCCT 1 cut(s) 354
SsiI CCGC 1 cut(s) 115
SspMI CTAG 1 cut(s) 146
StuI AGGCCT 1 cut(s) 354
StyI CCWWGG 1 cut(s) 349
TaaI ACNGT 1 cut(s) 294
TaiI ACGT 1 cut(s) 257
TasI AATT 1 cut(s) 106
TfiI GAWTC 1 cut(s) 39
TscAI CASTG 1 cut(s) 271
TseI GCWGC 4 cut(s) 51, 84, 117, 248
TspRI CASTG 1 cut(s) 271
VpaK11BI GGWCC 1 cut(s) 361
XapI RAATTY 1 cut(s) 106
XmiI GTMKAC 1 cut(s) 175
XspI CTAG 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.