Rmu_sc0004020.1_g000003

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004020.1
Physical Location & Seq
Reverse (-)
19308 .. 23922
4615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004020.1_g000003.1.cds

Sequence Viewer

Length: 984 bp
atgcaaacagagtcagcttacattgttcttcgaattgctgggtcaatggcgggcggatacaatctgggggttcccggcaccatctcggcgtttagctcccaccgatcagacaagtcctcggagaagctcacccacgcggccacgcctactcgaatagcttgtcctccgatcaagtccacccagccaacgactaagtccaatcaattgaatccaatcaatggcggcaccctccgattccgcgtcgtcgttcaagtcgccatcccttctgccgagggcaatgggctcaggcaagcggagaaagagagagagagagagagagagagagagagagatgaagtccaagtgagtcagtccaacccagcaagatctaaatcggcgagcggtggtaatcctccaccgttaattggcgtagatgaagtgaggatcattggagagcgagtagaagaggtcgttgatgtcactcaactgtgtgatgcatccgagtcggagcgtctcgaggacgcactcgaacaccaccacgtggcagagaatctggagcacgcctcgctgcttgtagtcgtactcctgcgccagcttgttgaggagctcggcggagacgacgaccgctccattttgtggccgatgtacaccggcacatgtccctctgggactctggtctctgagttgttgtggtgttgccggatagatgtcagatcaatggttcatgataaaacacaacatttactgaataagcttatcccatgcacgtggtgtcaatctaatggtcaaaccccaaatgggccccgccatgaaattcagcatcacactaattttgcacttcatcccatcaaacgccacgccgtacgggacgtctccggtccacgtgttcctcctagcgaagacgaccatccacgtggcgccatctgcgtcacccatctaactttgcggtgtcggagtcgccatcaactactcaaagctattaaatttttgctcacggcggggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

327

Amino Acids

36.1

Weight (kDa)

6.97

Isoelectric Point (pI)

38.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 852
AccB1I GGYRCC 3 cut(s) 77, 224, 896
AccB7I CCANNNNNTGG 3 cut(s) 218, 520, 615
AccBSI CCGCTC 2 cut(s) 381, 606
AccII CGCG 2 cut(s) 137, 240
AclWI GGATC 1 cut(s) 431
AcoI YGGCCR 2 cut(s) 138, 617
AcsI RAATTY 2 cut(s) 792, 962
AcvI CACGTG 4 cut(s) 520, 747, 863, 893
AcyI GRCGYC 2 cut(s) 849, 897
AdeI CACNNNGTG 2 cut(s) 520, 750
AfaI GTAC 3 cut(s) 561, 626, 843
AfiI CCNNNNNNNGG 5 cut(s) 218, 404, 520, 615, 777
AflIII ACRYGT 2 cut(s) 635, 862
AgsI TTSAA 2 cut(s) 208, 251
AluBI AGCT 8 cut(s) 17, 96, 127, 158, 574, 586, 733, 956
AluI AGCT 8 cut(s) 17, 96, 127, 158, 574, 586, 733, 956
Alw21I GWGCWC 2 cut(s) 540, 588
Alw26I GTCTC 4 cut(s) 497, 588, 661, 856
AlwI GGATC 1 cut(s) 431
Ama87I CYCGRG 1 cut(s) 494
AoxI GGCC 3 cut(s) 138, 617, 779
ApaI GGGCCC 1 cut(s) 783
ApeKI GCWGC 1 cut(s) 547
ApoI RAATTY 2 cut(s) 792, 962
ArsI GACNNNNNNTTYG 2 cut(s) 145, 177
AspLEI GCGC 2 cut(s) 570, 899
AspS9I GGNCC 3 cut(s) 779, 780, 857
AsuC2I CCSGG 1 cut(s) 75
AsuHPI GGTGA 2 cut(s) 121, 901
AsuII TTCGAA 1 cut(s) 31
AvaI CYCGRG 1 cut(s) 494
AvaII GGWCC 1 cut(s) 857
BaeGI GKGCMC 1 cut(s) 783
BanI GGYRCC 3 cut(s) 77, 224, 896
BanII GRGCYC 3 cut(s) 285, 588, 783
BbrPI CACGTG 4 cut(s) 520, 747, 863, 893
BbsI GAAGAC 1 cut(s) 885
Bbv12I GWGCWC 2 cut(s) 540, 588
BbvI GCAGC 1 cut(s) 534
BccI CCATC 7 cut(s) 89, 266, 833, 894, 908, 921, 948
BceAI ACGGC 1 cut(s) 824
BcgI CGANNNNNNTGC 2 cut(s) 465, 499
BciVI GTATCC 1 cut(s) 50
BcnI CCSGG 1 cut(s) 75
BcoDI GTCTC 4 cut(s) 497, 588, 661, 856
BfaI CTAG 1 cut(s) 873
BfoI RGCGCY 1 cut(s) 900
BfuI GTATCC 1 cut(s) 50
BglII AGATCT 1 cut(s) 365
BisI GCNGC 3 cut(s) 138, 223, 548
BlsI GCNGC 3 cut(s) 139, 224, 549
Bme1390I CCNGG 1 cut(s) 75
Bme18I GGWCC 1 cut(s) 857
BmeT110I CYCGRG 1 cut(s) 494
BmgT120I GGNCC 3 cut(s) 779, 780, 857
BmiI GGNNCC 6 cut(s) 72, 79, 226, 781, 782, 898
BmrFI CCNGG 1 cut(s) 75
BmsI GCATC 3 cut(s) 463, 485, 808
BoxI GACNNNNGTC 1 cut(s) 653
BpiI GAAGAC 1 cut(s) 885
BplI GAGNNNNNCTC 2 cut(s) 527, 559
BpmI CTGGAG 1 cut(s) 554
Bpu10I CCTNAGC 1 cut(s) 284
Bpu14I TTCGAA 1 cut(s) 31
BpuMI CCSGG 1 cut(s) 75
BsaAI YACGTR 4 cut(s) 520, 747, 863, 893
BsaBI GATNNNNATC 1 cut(s) 370
BsaHI GRCGYC 2 cut(s) 849, 897
BsaI GGTCTC 1 cut(s) 661
BsaJI CCNNGG 2 cut(s) 117, 270
BsaWI WCCGGW 1 cut(s) 854
BsaXI ACNNNNNCTCC 4 cut(s) 423, 453, 590, 620
Bsc4I CCNNNNNNNGG 5 cut(s) 218, 404, 520, 615, 777
Bse118I RCCGGY 1 cut(s) 629
Bse3DI GCAATG 1 cut(s) 283
Bse8I GATNNNNATC 1 cut(s) 370
BseDI CCNNGG 2 cut(s) 117, 270
BseGI GGATG 4 cut(s) 258, 476, 820, 886
BseJI GATNNNNATC 1 cut(s) 370
BseLI CCNNNNNNNGG 5 cut(s) 218, 404, 520, 615, 777
BseMI GCAATG 1 cut(s) 283
BseMII CTCAG 2 cut(s) 298, 651
BseRI GAGGAG 1 cut(s) 596
BseSI GKGCMC 1 cut(s) 783
BseXI GCAGC 1 cut(s) 534
BseYI CCCAGC 3 cut(s) 38, 180, 358
Bsh1236I CGCG 2 cut(s) 137, 240
Bsh1285I CGRYCG 1 cut(s) 604
BshFI GGCC 3 cut(s) 140, 619, 781
BshNI GGYRCC 3 cut(s) 77, 224, 896
BsiEI CGRYCG 1 cut(s) 604
BsiHKAI GWGCWC 2 cut(s) 540, 588
BsiHKCI CYCGRG 1 cut(s) 494
BsiSI CCGG 4 cut(s) 75, 630, 679, 855
BsiWI CGTACG 1 cut(s) 841
BslFI GGGAC 3 cut(s) 624, 661, 860
BslI CCNNNNNNNGG 5 cut(s) 218, 404, 520, 615, 777
BsmAI GTCTC 4 cut(s) 497, 588, 661, 856
BsmBI CGTCTC 3 cut(s) 497, 588, 856
BsmFI GGGAC 3 cut(s) 624, 661, 860
BsnI GGCC 3 cut(s) 140, 619, 781
Bso31I GGTCTC 1 cut(s) 661
BsoBI CYCGRG 1 cut(s) 494
Bsp119I TTCGAA 1 cut(s) 31
Bsp120I GGGCCC 1 cut(s) 779
Bsp1286I GDGCHC 4 cut(s) 285, 540, 588, 783
Bsp1407I TGTACA 1 cut(s) 624
Bsp143I GATC 5 cut(s) 104, 168, 365, 423, 692
BspANI GGCC 3 cut(s) 140, 619, 781
BspCNI CTCAG 2 cut(s) 297, 652
BspFNI CGCG 2 cut(s) 137, 240
BspHI TCATGA 1 cut(s) 703
BspLI GGNNCC 6 cut(s) 72, 79, 226, 781, 782, 898
BspPI GGATC 1 cut(s) 431
BspT104I TTCGAA 1 cut(s) 31
BspT107I GGYRCC 3 cut(s) 77, 224, 896
BspTNI GGTCTC 1 cut(s) 661
BsrBI CCGCTC 2 cut(s) 381, 606
BsrDI GCAATG 1 cut(s) 283
BsrFI RCCGGY 1 cut(s) 629
BsrGI TGTACA 1 cut(s) 624
BssAI RCCGGY 1 cut(s) 629
BssECI CCNNGG 2 cut(s) 117, 270
BssMI GATC 5 cut(s) 104, 168, 365, 423, 692
BssNI GRCGYC 2 cut(s) 849, 897
Bst4CI ACNGT 2 cut(s) 399, 468
Bst6I CTCTTC 1 cut(s) 438
BstACI GRCGYC 2 cut(s) 849, 897
BstAUI TGTACA 1 cut(s) 624
BstBAI YACGTR 4 cut(s) 520, 747, 863, 893
BstBI TTCGAA 1 cut(s) 31
BstC8I GCNNGC 5 cut(s) 52, 291, 379, 540, 572
BstDEI CTNAG 3 cut(s) 192, 284, 660
BstF5I GGATG 4 cut(s) 258, 476, 820, 886
BstFNI CGCG 2 cut(s) 137, 240
BstH2I RGCGCY 1 cut(s) 900
BstHHI GCGC 2 cut(s) 570, 899
BstKTI GATC 5 cut(s) 107, 171, 368, 426, 695
BstMAI GTCTC 4 cut(s) 497, 588, 661, 856
BstMBI GATC 5 cut(s) 104, 168, 365, 423, 692
BstMCI CGRYCG 1 cut(s) 604
BstMWI GCNNNNNNNGC 2 cut(s) 544, 903
BstNSI RCATGY 1 cut(s) 639
BstPAI GACNNNNGTC 1 cut(s) 653
BstSCI CCNGG 1 cut(s) 73
BstSLI GKGCMC 1 cut(s) 783
BstUI CGCG 2 cut(s) 137, 240
BstV1I GCAGC 1 cut(s) 534
BstV2I GAAGAC 1 cut(s) 885
BstX2I RGATCY 1 cut(s) 365
BstXI CCANNNNNNTGG 2 cut(s) 747, 893
BstYI RGATCY 1 cut(s) 365
BsuI GTATCC 1 cut(s) 50
BsuRI GGCC 3 cut(s) 140, 619, 781
BtsCI GGATG 4 cut(s) 258, 476, 820, 886
Cac8I GCNNGC 5 cut(s) 52, 291, 379, 540, 572
CciI TCATGA 1 cut(s) 703
CfoI GCGC 2 cut(s) 570, 899
Cfr10I RCCGGY 1 cut(s) 629
Cfr13I GGNCC 3 cut(s) 779, 780, 857
CseI GACGC 4 cut(s) 229, 479, 509, 895
Csp6I GTAC 3 cut(s) 560, 625, 842
CviAII CATG 4 cut(s) 636, 704, 741, 788
CviQI GTAC 3 cut(s) 560, 625, 842
DdeI CTNAG 3 cut(s) 192, 284, 660
DinI GGCGCC 1 cut(s) 898
DpnI GATC 5 cut(s) 106, 170, 367, 425, 694
DpnII GATC 5 cut(s) 104, 168, 365, 423, 692
DraIII CACNNNGTG 2 cut(s) 520, 750
EaeI YGGCCR 2 cut(s) 138, 617
Eam1104I CTCTTC 1 cut(s) 438
EarI CTCTTC 1 cut(s) 438
EciI GGCGGA 2 cut(s) 69, 606
Ecl136II GAGCTC 1 cut(s) 586
Eco24I GRGCYC 3 cut(s) 285, 588, 783
Eco31I GGTCTC 1 cut(s) 661
Eco47I GGWCC 1 cut(s) 857
Eco53kI GAGCTC 1 cut(s) 586
Eco72I CACGTG 4 cut(s) 520, 747, 863, 893
Eco88I CYCGRG 1 cut(s) 494
EcoICRI GAGCTC 1 cut(s) 586
EcoO109I RGGNCCY 1 cut(s) 780
EcoT22I ATGCAT 1 cut(s) 478
EcoT38I GRGCYC 3 cut(s) 285, 588, 783
EgeI GGCGCC 1 cut(s) 898
EheI GGCGCC 1 cut(s) 898
Esp3I CGTCTC 3 cut(s) 497, 588, 856
FaeI CATG 4 cut(s) 639, 707, 744, 791
FaiI YATR 4 cut(s) 637, 705, 742, 789
FaqI GGGAC 3 cut(s) 624, 661, 860
FatI CATG 4 cut(s) 635, 703, 740, 787
FauI CCCGC 3 cut(s) 43, 791, 970
Fnu4HI GCNGC 3 cut(s) 138, 223, 548
FokI GGATG 4 cut(s) 245, 463, 807, 873
FriOI GRGCYC 3 cut(s) 285, 588, 783
Fsp4HI GCNGC 3 cut(s) 138, 223, 548
FspBI CTAG 1 cut(s) 873
GlaI GCGC 2 cut(s) 569, 898
GluI GCNGC 3 cut(s) 138, 223, 548
GsaI CCCAGC 3 cut(s) 42, 184, 362
GsuI CTGGAG 1 cut(s) 554
HaeII RGCGCY 1 cut(s) 900
HaeIII GGCC 3 cut(s) 140, 619, 781
HapII CCGG 4 cut(s) 75, 630, 679, 855
HgaI GACGC 4 cut(s) 229, 479, 509, 895
HhaI GCGC 2 cut(s) 570, 899
Hin1I GRCGYC 2 cut(s) 849, 897
Hin1II CATG 4 cut(s) 639, 707, 744, 791
Hin6I GCGC 2 cut(s) 568, 897
HinP1I GCGC 2 cut(s) 568, 897
HindIII AAGCTT 1 cut(s) 731
HinfI GANTC 8 cut(s) 11, 208, 234, 346, 482, 529, 649, 934
HpaII CCGG 4 cut(s) 75, 630, 679, 855
HphI GGTGA 2 cut(s) 121, 901
Hpy166II GTNNAC 3 cut(s) 177, 627, 860
Hpy188I TCNGA 9 cut(s) 109, 121, 168, 233, 481, 487, 661, 692, 933
Hpy188III TCNNGA 3 cut(s) 494, 533, 704
Hpy8I GTNNAC 3 cut(s) 177, 627, 860
Hpy99I CGWCG 3 cut(s) 245, 248, 602
HpyAV CCTTC 1 cut(s) 273
HpyCH4III ACNGT 2 cut(s) 399, 468
HpyCH4IV ACGT 5 cut(s) 519, 746, 849, 862, 892
HpyCH4V TGCA 4 cut(s) 4, 476, 744, 815
HpyF10VI GCNNNNNNNGC 2 cut(s) 544, 903
HpyF3I CTNAG 3 cut(s) 192, 284, 660
HpySE526I ACGT 5 cut(s) 519, 746, 849, 862, 892
Hsp92I GRCGYC 2 cut(s) 849, 897
Hsp92II CATG 4 cut(s) 639, 707, 744, 791
HspAI GCGC 2 cut(s) 568, 897
KasI GGCGCC 1 cut(s) 896
Kzo9I GATC 5 cut(s) 104, 168, 365, 423, 692
LmnI GCTCC 5 cut(s) 101, 487, 535, 583, 611
Lsp1109I GCAGC 1 cut(s) 534
LweI GCATC 3 cut(s) 463, 485, 808
MaeI CTAG 1 cut(s) 873
MaeII ACGT 5 cut(s) 519, 746, 849, 862, 892
MaeIII GTNAC 2 cut(s) 457, 907
MalI GATC 5 cut(s) 106, 170, 367, 425, 694
MbiI CCGCTC 2 cut(s) 381, 606
MboI GATC 5 cut(s) 104, 168, 365, 423, 692
MboII GAAGA 3 cut(s) 20, 455, 890
MfeI CAATTG 1 cut(s) 203
MflI RGATCY 1 cut(s) 365
MhlI GDGCHC 4 cut(s) 285, 540, 588, 783
MluCI AATT 6 cut(s) 33, 203, 402, 792, 808, 962
Mly113I GGCGCC 1 cut(s) 897
MlyI GAGTC 5 cut(s) 20, 355, 491, 643, 943
MmeI TCCRAC 3 cut(s) 378, 465, 911
Mph1103I ATGCAT 1 cut(s) 478
MseI TTAA 2 cut(s) 401, 960
MslI CAYNNNNRTG 2 cut(s) 745, 891
MspI CCGG 4 cut(s) 75, 630, 679, 855
MspR9I CCNGG 1 cut(s) 75
MunI CAATTG 1 cut(s) 203
MvnI CGCG 2 cut(s) 137, 240
MwoI GCNNNNNNNGC 2 cut(s) 544, 903
NarI GGCGCC 1 cut(s) 897
NciI CCSGG 1 cut(s) 75
NdeII GATC 5 cut(s) 104, 168, 365, 423, 692
NlaIII CATG 4 cut(s) 639, 707, 744, 791
NlaIV GGNNCC 6 cut(s) 72, 79, 226, 781, 782, 898
NmeAIII GCCGAG 3 cut(s) 65, 295, 567
NmuCI GTSAC 2 cut(s) 457, 907
NsiI ATGCAT 1 cut(s) 478
NspI RCATGY 1 cut(s) 639
NspV TTCGAA 1 cut(s) 31
PaeR7I CTCGAG 1 cut(s) 494
PagI TCATGA 1 cut(s) 703
PciI ACATGT 1 cut(s) 635
PcsI WCGNNNNNNNCGW 1 cut(s) 594
PfeI GAWTC 3 cut(s) 208, 234, 529
Pfl23II CGTACG 1 cut(s) 841
PflFI GACNNNGTC 1 cut(s) 193
PflMI CCANNNNNTGG 3 cut(s) 218, 520, 615
PkrI GCNGC 3 cut(s) 139, 224, 549
PleI GAGTC 5 cut(s) 19, 354, 490, 643, 942
PluTI GGCGCC 1 cut(s) 900
PmaCI CACGTG 4 cut(s) 520, 747, 863, 893
PmlI CACGTG 4 cut(s) 520, 747, 863, 893
PpsI GAGTC 5 cut(s) 19, 354, 490, 643, 942
Ppu21I YACGTR 4 cut(s) 520, 747, 863, 893
PscI ACATGT 1 cut(s) 635
PshAI GACNNNNGTC 1 cut(s) 653
Psp124BI GAGCTC 1 cut(s) 588
PspCI CACGTG 4 cut(s) 520, 747, 863, 893
PspFI CCCAGC 3 cut(s) 38, 180, 358
PspLI CGTACG 1 cut(s) 841
PspN4I GGNNCC 6 cut(s) 72, 79, 226, 781, 782, 898
PspOMI GGGCCC 1 cut(s) 779
PspPI GGNCC 3 cut(s) 779, 780, 857
PsuI RGATCY 1 cut(s) 365
PsyI GACNNNGTC 1 cut(s) 193
RsaI GTAC 3 cut(s) 561, 626, 843
RsaNI GTAC 3 cut(s) 560, 625, 842
RseI CAYNNNNRTG 2 cut(s) 745, 891
SacI GAGCTC 1 cut(s) 588
SaqAI TTAA 2 cut(s) 401, 960
SatI GCNGC 3 cut(s) 138, 223, 548
Sau3AI GATC 5 cut(s) 104, 168, 365, 423, 692
Sau96I GGNCC 3 cut(s) 779, 780, 857
SchI GAGTC 5 cut(s) 20, 355, 491, 643, 943
ScrFI CCNGG 1 cut(s) 75
SduI GDGCHC 4 cut(s) 285, 540, 588, 783
SfaNI GCATC 3 cut(s) 463, 485, 808
SfoI GGCGCC 1 cut(s) 898
Sfr274I CTCGAG 1 cut(s) 494
SfuI TTCGAA 1 cut(s) 31
SinI GGWCC 1 cut(s) 857
SlaI CTCGAG 1 cut(s) 494
SmiMI CAYNNNNRTG 2 cut(s) 745, 891
SmlI CTYRAG 1 cut(s) 494
SmoI CTYRAG 1 cut(s) 494
Sse9I AATT 6 cut(s) 33, 203, 402, 792, 808, 962
SspDI GGCGCC 1 cut(s) 896
SspMI CTAG 1 cut(s) 873
SstI GAGCTC 1 cut(s) 588
StyD4I CCNGG 1 cut(s) 73
TaaI ACNGT 2 cut(s) 399, 468
TaiI ACGT 5 cut(s) 522, 749, 852, 865, 895
TaqI TCGA 4 cut(s) 31, 151, 495, 507
TasI AATT 6 cut(s) 33, 203, 402, 792, 808, 962
TatI WGTACW 1 cut(s) 624
TauI GCSGC 2 cut(s) 140, 225
TfiI GAWTC 3 cut(s) 208, 234, 529
Tru1I TTAA 2 cut(s) 401, 960
Tru9I TTAA 2 cut(s) 401, 960
TseFI GTSAC 2 cut(s) 457, 907
TseI GCWGC 1 cut(s) 547
Tsp45I GTSAC 2 cut(s) 457, 907
TspDTI ATGAA 5 cut(s) 348, 429, 692, 804, 809
Tth111I GACNNNGTC 1 cut(s) 193
Van91I CCANNNNNTGG 3 cut(s) 218, 520, 615
VpaK11BI GGWCC 1 cut(s) 857
XapI RAATTY 2 cut(s) 792, 962
XceI RCATGY 1 cut(s) 639
XhoI CTCGAG 1 cut(s) 494
XspI CTAG 1 cut(s) 873
ZraI GACGTC 1 cut(s) 850
Zsp2I ATGCAT 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.