Rh4AG373300

CAAX protease self-immunity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0004201
Physical Location & Seq
Reverse (-)
68105973 .. 68109535
3563 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG373300.1

Sequence Viewer

Length: 720 bp
ATGTTCAGACTTCAAATTTTTGGTCTTTTTTTCTGGCTCCAACCAAAATGCTTATTTCACATACTTTGTGTATTTAGAAATTCCCAAGGGTCTAATTGGTTCTGTTCTTGTTTGGTTAGTGTTACGACTGCAGCCATACTTGGAGTTCTGTATACCGTTGCCGGCAAATTCCAACCGCTGCCTCAAGATATTTATCGCTATGATTGGAGGGAACCTTTCAGTCTACAGAGAGGGTGGCTTTTGTGGGCTGGGATTGGTCTTGTTGCTGCTGTTGCTGCTGTGGCATTGACAGGGGCTGCCATGTCCTTTTTCAGTGGGCAAACCCCAGAAAGAGAGAAGGACGCTCTAGTTAGCTTGCTCCCATTAATTGGATCATCAAGTATTAGCACTGCTTGCTTGTTAGGCATCACTGGAGTTTTGGCTCCAATTCTTGAGGAAACTGTGTTCCGCGGGTTTTTTATGGTCTCCATGACTAAGTGGGTACCTACACCAGTTGCTGTTGTAATTAGTGCAGCTGTATTTGCACTTGCACATCTCACTCCTGGAGAGTTTCCCCAGCTGTTTGTGCTAGGTGCTGCTATGGGATTGTCGTATGCTCAAACTCGCAACCTTTTGACCCCCATCACAATACATGCTTTCTGGAACTCGGGAGTTATATTGCTTCTGACCTTCCTTCAGCTTCAAGGGTACGATATCAAGGAATTGTTGCAGGCAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abi

Protein Analysis

239

Amino Acids

26.22

Weight (kDa)

8.32

Isoelectric Point (pI)

45.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rce1-like PF02517 131 - 216 2.8e-21 Type II CAAX prenyl endopeptidase Rce1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 481
AccB1I GGYRCC 1 cut(s) 481
AccB7I CCANNNNNTGG 1 cut(s) 368
AccI GTMKAC 2 cut(s) 152, 223
AccII CGCG 1 cut(s) 450
AciI CCGC 3 cut(s) 176, 448, 450
AclWI GGATC 1 cut(s) 379
AcsI RAATTY 3 cut(s) 15, 79, 167
AcuI CTGAAG 1 cut(s) 659
AfaI GTAC 2 cut(s) 483, 689
AfiI CCNNNNNNNGG 1 cut(s) 368
AgsI TTSAA 2 cut(s) 14, 683
AjnI CCWGG 1 cut(s) 541
AloI GAACNNNNNNTCC 2 cut(s) 428, 460
AluBI AGCT 4 cut(s) 354, 515, 559, 679
AluI AGCT 4 cut(s) 354, 515, 559, 679
Alw26I GTCTC 1 cut(s) 469
AlwI GGATC 1 cut(s) 379
AlwNI CAGNNNCTG 2 cut(s) 296, 497
Ama87I CYCGRG 1 cut(s) 646
ApeKI GCWGC 7 cut(s) 131, 178, 266, 275, 296, 512, 575
ApoI RAATTY 3 cut(s) 15, 79, 167
ArsI GACNNNNNNTTYG 2 cut(s) 7, 39
AseI ATTAAT 1 cut(s) 365
Asp718I GGTACC 1 cut(s) 481
AvaI CYCGRG 1 cut(s) 646
BanI GGYRCC 1 cut(s) 481
BbvI GCAGC 7 cut(s) 143, 165, 253, 262, 283, 524, 562
BccI CCATC 1 cut(s) 629
BciT130I CCWGG 1 cut(s) 543
BcoDI GTCTC 1 cut(s) 469
BfaI CTAG 2 cut(s) 347, 569
BfmI CTRYAG 2 cut(s) 129, 224
BisI GCNGC 7 cut(s) 132, 179, 267, 276, 297, 513, 576
BlsI GCNGC 7 cut(s) 133, 180, 268, 277, 298, 514, 577
Bme1390I CCNGG 1 cut(s) 543
BmeT110I CYCGRG 1 cut(s) 646
BmiI GGNNCC 4 cut(s) 38, 213, 423, 483
BmrFI CCNGG 1 cut(s) 543
BmsI GCATC 1 cut(s) 414
BpmI CTGGAG 2 cut(s) 432, 564
BpuEI CTTGAG 2 cut(s) 168, 452
BsaBI GATNNNNATC 1 cut(s) 192
BsaI GGTCTC 1 cut(s) 469
BsaJI CCNNGG 2 cut(s) 85, 448
Bsc4I CCNNNNNNNGG 1 cut(s) 368
Bse118I RCCGGY 1 cut(s) 161
Bse1I ACTGG 2 cut(s) 415, 491
Bse8I GATNNNNATC 1 cut(s) 192
BseBI CCWGG 1 cut(s) 543
BseDI CCNNGG 2 cut(s) 85, 448
BseJI GATNNNNATC 1 cut(s) 192
BseLI CCNNNNNNNGG 1 cut(s) 368
BseNI ACTGG 2 cut(s) 415, 491
BseXI GCAGC 7 cut(s) 143, 165, 253, 262, 283, 524, 562
BseYI CCCAGC 2 cut(s) 248, 555
BsgI GTGCAG 1 cut(s) 531
Bsh1236I CGCG 1 cut(s) 450
BshNI GGYRCC 1 cut(s) 481
BsiHKCI CYCGRG 1 cut(s) 646
BsiSI CCGG 1 cut(s) 162
BslI CCNNNNNNNGG 1 cut(s) 368
BsmAI GTCTC 1 cut(s) 469
Bso31I GGTCTC 1 cut(s) 469
BsoBI CYCGRG 1 cut(s) 646
Bsp143I GATC 1 cut(s) 371
BspACI CCGC 3 cut(s) 176, 448, 450
BspFNI CGCG 1 cut(s) 450
BspLI GGNNCC 4 cut(s) 38, 213, 423, 483
BspMAI CTGCAG 1 cut(s) 133
BspPI GGATC 1 cut(s) 379
BspT107I GGYRCC 1 cut(s) 481
BspTNI GGTCTC 1 cut(s) 469
BsrFI RCCGGY 1 cut(s) 161
BsrI ACTGG 2 cut(s) 415, 491
BssAI RCCGGY 1 cut(s) 161
BssECI CCNNGG 2 cut(s) 85, 448
BssMI GATC 1 cut(s) 371
BssNAI GTATAC 1 cut(s) 153
BssT1I CCWWGG 1 cut(s) 85
Bst1107I GTATAC 1 cut(s) 153
Bst2UI CCWGG 1 cut(s) 543
Bst4CI ACNGT 2 cut(s) 157, 442
BstAPI GCANNNNNTGC 1 cut(s) 393
BstC8I GCNNGC 4 cut(s) 163, 356, 394, 711
BstDEI CTNAG 1 cut(s) 474
BstDSI CCRYGG 1 cut(s) 448
BstFNI CGCG 1 cut(s) 450
BstKTI GATC 1 cut(s) 374
BstMAI GTCTC 1 cut(s) 469
BstMBI GATC 1 cut(s) 371
BstMWI GCNNNNNNNGC 7 cut(s) 272, 275, 281, 393, 402, 521, 565
BstNI CCWGG 1 cut(s) 543
BstNSI RCATGY 1 cut(s) 635
BstSCI CCNGG 1 cut(s) 541
BstSFI CTRYAG 2 cut(s) 129, 224
BstUI CGCG 1 cut(s) 450
BstV1I GCAGC 7 cut(s) 143, 165, 253, 262, 283, 524, 562
BstZ17I GTATAC 1 cut(s) 153
BtgI CCRYGG 1 cut(s) 448
BtsI GCAGTG 1 cut(s) 387
BtsIMutI CAGTG 3 cut(s) 319, 387, 408
Cac8I GCNNGC 4 cut(s) 163, 356, 394, 711
CaiI CAGNNNCTG 2 cut(s) 296, 497
Cfr10I RCCGGY 1 cut(s) 161
Cfr42I CCGCGG 1 cut(s) 451
CseI GACGC 1 cut(s) 350
Csp6I GTAC 2 cut(s) 482, 688
CviAII CATG 3 cut(s) 301, 469, 632
CviQI GTAC 2 cut(s) 482, 688
DdeI CTNAG 1 cut(s) 474
DpnI GATC 1 cut(s) 373
DpnII GATC 1 cut(s) 371
Eco130I CCWWGG 1 cut(s) 85
Eco31I GGTCTC 1 cut(s) 469
Eco32I GATATC 1 cut(s) 694
Eco57I CTGAAG 1 cut(s) 659
Eco88I CYCGRG 1 cut(s) 646
EcoRII CCWGG 1 cut(s) 541
EcoRV GATATC 1 cut(s) 694
EcoT14I CCWWGG 1 cut(s) 85
ErhI CCWWGG 1 cut(s) 85
FaeI CATG 3 cut(s) 304, 472, 635
FatI CATG 3 cut(s) 300, 468, 631
FauI CCCGC 1 cut(s) 443
FblI GTMKAC 2 cut(s) 152, 223
Fnu4HI GCNGC 7 cut(s) 132, 179, 267, 276, 297, 513, 576
Fsp4HI GCNGC 7 cut(s) 132, 179, 267, 276, 297, 513, 576
FspBI CTAG 2 cut(s) 347, 569
GluI GCNGC 7 cut(s) 132, 179, 267, 276, 297, 513, 576
GsaI CCCAGC 2 cut(s) 252, 559
GsuI CTGGAG 2 cut(s) 432, 564
HapII CCGG 1 cut(s) 162
HgaI GACGC 1 cut(s) 350
Hin1II CATG 3 cut(s) 304, 472, 635
HpaII CCGG 1 cut(s) 162
Hpy166II GTNNAC 2 cut(s) 153, 224
Hpy188I TCNGA 2 cut(s) 8, 666
Hpy188III TCNNGA 4 cut(s) 185, 431, 640, 648
Hpy8I GTNNAC 2 cut(s) 153, 224
HpyAV CCTTC 3 cut(s) 331, 679, 683
HpyCH4III ACNGT 2 cut(s) 157, 442
HpyCH4V TGCA 5 cut(s) 131, 512, 524, 530, 709
HpyF10VI GCNNNNNNNGC 7 cut(s) 272, 275, 281, 393, 402, 521, 565
HpyF3I CTNAG 1 cut(s) 474
Hsp92II CATG 3 cut(s) 304, 472, 635
KpnI GGTACC 1 cut(s) 485
KroI GCCGGC 1 cut(s) 161
KroNI GCCGGC 1 cut(s) 163
KspI CCGCGG 1 cut(s) 451
Kzo9I GATC 1 cut(s) 371
LmnI GCTCC 3 cut(s) 42, 363, 427
Lsp1109I GCAGC 7 cut(s) 143, 165, 253, 262, 283, 524, 562
LweI GCATC 1 cut(s) 414
MaeI CTAG 2 cut(s) 347, 569
MaeIII GTNAC 1 cut(s) 121
MalI GATC 1 cut(s) 373
MboI GATC 1 cut(s) 371
MluCI AATT 8 cut(s) 15, 79, 94, 167, 366, 426, 504, 701
MmeI TCCRAC 2 cut(s) 64, 196
MnlI CCTC 4 cut(s) 192, 201, 224, 427
MroNI GCCGGC 1 cut(s) 161
MseI TTAA 1 cut(s) 365
MspA1I CMGCKG 4 cut(s) 178, 450, 515, 559
MspI CCGG 1 cut(s) 162
MspR9I CCNGG 1 cut(s) 543
MvaI CCWGG 1 cut(s) 543
MvnI CGCG 1 cut(s) 450
MwoI GCNNNNNNNGC 7 cut(s) 272, 275, 281, 393, 402, 521, 565
NaeI GCCGGC 1 cut(s) 163
NdeII GATC 1 cut(s) 371
NgoMIV GCCGGC 1 cut(s) 161
NlaIII CATG 3 cut(s) 304, 472, 635
NlaIV GGNNCC 4 cut(s) 38, 213, 423, 483
NspI RCATGY 1 cut(s) 635
PdiI GCCGGC 1 cut(s) 163
PflMI CCANNNNNTGG 1 cut(s) 368
PfoI TCCNGGA 1 cut(s) 541
PkrI GCNGC 7 cut(s) 133, 180, 268, 277, 298, 514, 577
PshBI ATTAAT 1 cut(s) 365
Psp6I CCWGG 1 cut(s) 541
PspFI CCCAGC 2 cut(s) 248, 555
PspGI CCWGG 1 cut(s) 541
PspN4I GGNNCC 4 cut(s) 38, 213, 423, 483
PstI CTGCAG 1 cut(s) 133
PstNI CAGNNNCTG 2 cut(s) 296, 497
PvuII CAGCTG 2 cut(s) 515, 559
RsaI GTAC 2 cut(s) 483, 689
RsaNI GTAC 2 cut(s) 482, 688
SacII CCGCGG 1 cut(s) 451
SaqAI TTAA 1 cut(s) 365
SatI GCNGC 7 cut(s) 132, 179, 267, 276, 297, 513, 576
Sau3AI GATC 1 cut(s) 371
ScrFI CCNGG 1 cut(s) 543
SfaNI GCATC 1 cut(s) 414
SfcI CTRYAG 2 cut(s) 129, 224
Sfr303I CCGCGG 1 cut(s) 451
SgrBI CCGCGG 1 cut(s) 451
SmlI CTYRAG 2 cut(s) 183, 431
SmoI CTYRAG 2 cut(s) 183, 431
Sse9I AATT 8 cut(s) 15, 79, 94, 167, 366, 426, 504, 701
SsiI CCGC 3 cut(s) 176, 448, 450
SspMI CTAG 2 cut(s) 347, 569
StyD4I CCNGG 1 cut(s) 541
StyI CCWWGG 1 cut(s) 85
TaaI ACNGT 2 cut(s) 157, 442
TasI AATT 8 cut(s) 15, 79, 94, 167, 366, 426, 504, 701
Tru1I TTAA 1 cut(s) 365
Tru9I TTAA 1 cut(s) 365
TscAI CASTG 3 cut(s) 319, 394, 415
TseI GCWGC 7 cut(s) 131, 178, 266, 275, 296, 512, 575
TspRI CASTG 3 cut(s) 319, 394, 415
Van91I CCANNNNNTGG 1 cut(s) 368
VspI ATTAAT 1 cut(s) 365
XapI RAATTY 3 cut(s) 15, 79, 167
XceI RCATGY 1 cut(s) 635
XmiI GTMKAC 2 cut(s) 152, 223
XspI CTAG 2 cut(s) 347, 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.