Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0004201

Physical Location & Seq

Genomic Coordinates Reverse (-)

4079654 .. 4082450

Gene Structure 2797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g06350.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGGAGGAGTCCATCAATAGTGCAGCCAAACGGGTAACAAGTAATATTACGGAAACCTCAGGCCAGCCTTATCCCTCTGGGCTCTGCGCAACGGTCGTAAGTCTCGCTGCTCAGCAATTCTGCATGCTCAAAAGTTCGAATACAATATCAAAACCAGCAATGGTGTACACGCTGTTCACATCTGTAGCTCAATCTTCTTTCTCCAGCTTCTCAGACTCAACCAATCTAACTTCTTCCAGAACCCAAATTCCCTCCCTTTTTCTCGACGGCCGCAGAAGCTTCACAGCCACCTTCTCGCCGCGCCGACTAACCCAGCTTTCAAGGCTCAGAAAAGTCAGAAATCCGCCGTGCATTTGCTTTTTCAGCGGCGGAGGAAAGCCCAAAGGCGATTTCCAAGAAAAGGAAAATGAGTCGAAGTGGCGGATTTTGAAGCGGTGGGATGTGCCCTGGGAATGGCAAACGGCGTCGTTAACATCGCTTGCTTGTGGACTGAGTTTTGTTTTGACAGGACTGGTAGAGGCAGCAGCTATACCGTATTTAGGAATTCGAATTCCGGAATTGAGTTTGGATGAAAAGGCAGAGATACTGATTCTCGATCAAGGTTTTACAACTGCAGCTGTACTTGCTGTTCTATATGCTGTTGCCAGCACTTACCAACCACTGCCTGAAGATGTTTATCGCTACGATTTAAGGGAACCTTTCAATCTACAGAAGGGATGGCTATTGTGGGCAGGGATTGGTATTGTTGGTGCCATAGCTGCTATTGCAGTGACAGGGGCTGCATTGTCCTTGTTGAGGGGGGAGAGCCCAGAACGAGAGAAGGACGCTCTAGTTAGCTTGCTTCCACTGATTGGATCATCCGGTATTAGCACTGCTTGCTTGCTAGGCATCACTGGAGTTTTGGCGCCAATTCTTGAAGAAACTGTGTTTCGCGGGTTTTTTATGGTATCCATGACCAAGTGGGTACCTACACCAGTGGCTATTGTAATAAGTGCAGCTGTATTTGCACTTGCACATCTCACTCCGGGGGAGTTTCCCCAGCTTTTTGTGCTAGGCACTGCTCTGGGATTGTCATATGCTCAAACTCGCAACCTTGTAACCCCCATCACAATACATGCTCTCTGGAACTCAGGAGTGATCTTGCTTCTGACCTTCCTTCAGCTACAAGGGTACGATATCAAGGAACTGTTGCAGACAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abi

Protein Analysis

401

Amino Acids

43.44

Weight (kDa)

8.16

Isoelectric Point (pI)

46.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14270 AT1G14270 AT1G14270 AT1G14270
fragaria_vesca	FvH4_4g31430 FvH4_4g31430 FvH4_4g31430
malus_domestica	MD13G1072600.v1.1 MD16G1073400.v1.1
prunus_persica	Prupe.1G273600_v2.0.a1 Prupe.1G273600_v2.0.a1
pyrus_communis	pycom13g06510 pycom16g06350
rosa_chinensis	RchiOBHm_Chr4g0413061 RchiOBHm_Chr4g0439911
rosa_laevigata	RLG00000006227
rosa_multiflora	Rmu_sc0004020.1_g000003 Rmu_sc0022459.1_g000004
rosa_roxburghii	Rroxscaffold_1G00051590 Rroxscaffold_5G00380860 Rroxscaffold_7G00174140
rosa_rugosa	Rorug04G0322300
rosa_samantha	Rh1CG266600 Rh3CG366200 Rh4AG122400 Rh4AG373300 Rh4BG385600 Rh4CG400100 Rh4DG379900 Rh5AG410800 Rh7AG445800
rosa_wichuraiana	Rw4G031920 Rw7G025690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	88
Acc65I	GGTACC	1 cut(s)	964
AccB1I	GGYRCC	3 cut(s)	749, 904, 964
AccB7I	CCANNNNNTGG	1 cut(s)	851
AccII	CGCG	2 cut(s)	301, 933
AccIII	TCCGGA	1 cut(s)	553
AciI	CCGC	8 cut(s)	271, 299, 344, 366, 369, 421, 433, 933
AclWI	GGATC	1 cut(s)	862
AcoI	YGGCCR	1 cut(s)	268
AcsI	RAATTY	3 cut(s)	246, 543, 549
AcuI	CTGAAG	2 cut(s)	687, 1142
AcyI	GRCGYC	2 cut(s)	464, 905
AfaI	GTAC	4 cut(s)	167, 621, 966, 1172
AfiI	CCNNNNNNNGG	5 cut(s)	400, 453, 539, 795, 851
AgsI	TTSAA	4 cut(s)	321, 430, 703, 917
AjnI	CCWGG	1 cut(s)	446
AjuI	GAANNNNNNNTTGG	2 cut(s)	374, 406
AloI	GAACNNNNNNTCC	2 cut(s)	232, 264
Alw26I	GTCTC	1 cut(s)	107
AlwI	GGATC	1 cut(s)	862
AlwNI	CAGNNNCTG	1 cut(s)	779
Aor13HI	TCCGGA	1 cut(s)	553
AoxI	GGCC	2 cut(s)	61, 268
ApeKI	GCWGC	8 cut(s)	23, 107, 521, 524, 614, 758, 779, 995
ApoI	RAATTY	3 cut(s)	246, 543, 549
Asp718I	GGTACC	1 cut(s)	964
AspLEI	GCGC	3 cut(s)	89, 303, 907
AsuC2I	CCSGG	1 cut(s)	1026
AsuII	TTCGAA	2 cut(s)	137, 547
AxyI	CCTNAGG	1 cut(s)	58
BaeGI	GKGCMC	1 cut(s)	447
BanI	GGYRCC	3 cut(s)	749, 904, 964
BanII	GRGCYC	2 cut(s)	84, 809
BbvI	GCAGC	8 cut(s)	35, 94, 533, 536, 626, 745, 766, 1007
BccI	CCATC	3 cut(s)	20, 711, 1112
BceAI	ACGGC	3 cut(s)	283, 331, 477
BciT130I	CCWGG	1 cut(s)	448
BciVI	GTATCC	1 cut(s)	958
BcnI	CCSGG	1 cut(s)	1026
BcoDI	GTCTC	1 cut(s)	107
BfaI	CTAG	3 cut(s)	830, 884, 1052
BfmI	CTRYAG	3 cut(s)	183, 612, 707
BfoI	RGCGCY	1 cut(s)	908
BfuI	GTATCC	1 cut(s)	958
BlpI	GCTNAGC	1 cut(s)	111
Bme1390I	CCNGG	2 cut(s)	448, 1026
BmiI	GGNNCC	4 cut(s)	696, 751, 906, 966
BmrFI	CCNGG	2 cut(s)	448, 1026
BmsI	GCATC	1 cut(s)	897
BpmI	CTGGAG	2 cut(s)	187, 915
Bpu1102I	GCTNAGC	1 cut(s)	111
Bpu14I	TTCGAA	2 cut(s)	137, 547
BpuMI	CCSGG	1 cut(s)	1026
BsaBI	GATNNNNATC	1 cut(s)	675
BsaHI	GRCGYC	2 cut(s)	464, 905
BsaJI	CCNNGG	3 cut(s)	446, 447, 1025
BsaWI	WCCGGW	2 cut(s)	553, 860
Bsc4I	CCNNNNNNNGG	5 cut(s)	400, 453, 539, 795, 851
Bse1I	ACTGG	3 cut(s)	516, 898, 974
Bse21I	CCTNAGG	1 cut(s)	58
Bse3DI	GCAATG	1 cut(s)	165
Bse8I	GATNNNNATC	1 cut(s)	675
BseAI	TCCGGA	1 cut(s)	553
BseBI	CCWGG	1 cut(s)	448
BseDI	CCNNGG	3 cut(s)	446, 447, 1025
BseGI	GGATG	4 cut(s)	445, 574, 722, 857
BseJI	GATNNNNATC	1 cut(s)	675
BseLI	CCNNNNNNNGG	5 cut(s)	400, 453, 539, 795, 851
BseMI	GCAATG	1 cut(s)	165
BseMII	CTCAG	6 cut(s)	72, 125, 225, 340, 482, 1143
BseNI	ACTGG	3 cut(s)	516, 898, 974
BseRI	GAGGAG	1 cut(s)	20
BseSI	GKGCMC	1 cut(s)	447
BseX3I	CGGCCG	1 cut(s)	268
BseXI	GCAGC	8 cut(s)	35, 94, 533, 536, 626, 745, 766, 1007
BseYI	CCCAGC	2 cut(s)	312, 1038
BsgI	GTGCAG	2 cut(s)	42, 1014
Bsh1236I	CGCG	2 cut(s)	301, 933
Bsh1285I	CGRYCG	2 cut(s)	96, 271
BshFI	GGCC	2 cut(s)	63, 270
BshNI	GGYRCC	3 cut(s)	749, 904, 964
BsiEI	CGRYCG	2 cut(s)	96, 271
BsiSI	CCGG	3 cut(s)	554, 861, 1025
BslI	CCNNNNNNNGG	5 cut(s)	400, 453, 539, 795, 851
BsmAI	GTCTC	1 cut(s)	107
BsnI	GGCC	2 cut(s)	63, 270
Bsp119I	TTCGAA	2 cut(s)	137, 547
Bsp1286I	GDGCHC	3 cut(s)	84, 447, 809
Bsp13I	TCCGGA	1 cut(s)	553
Bsp1407I	TGTACA	1 cut(s)	165
Bsp143I	GATC	3 cut(s)	595, 854, 1137
Bsp1720I	GCTNAGC	1 cut(s)	111
BspACI	CCGC	8 cut(s)	271, 299, 344, 366, 369, 421, 433, 933
BspANI	GGCC	2 cut(s)	63, 270
BspCNI	CTCAG	6 cut(s)	71, 124, 224, 339, 483, 1142
BspEI	TCCGGA	1 cut(s)	553
BspFNI	CGCG	2 cut(s)	301, 933
BspLI	GGNNCC	4 cut(s)	696, 751, 906, 966
BspMAI	CTGCAG	1 cut(s)	616
BspPI	GGATC	1 cut(s)	862
BspT104I	TTCGAA	2 cut(s)	137, 547
BspT107I	GGYRCC	3 cut(s)	749, 904, 964
BsrDI	GCAATG	1 cut(s)	165
BsrGI	TGTACA	1 cut(s)	165
BsrI	ACTGG	3 cut(s)	516, 898, 974
BssECI	CCNNGG	3 cut(s)	446, 447, 1025
BssMI	GATC	3 cut(s)	595, 854, 1137
BssNI	GRCGYC	2 cut(s)	464, 905
Bst2UI	CCWGG	1 cut(s)	448
Bst4CI	ACNGT	4 cut(s)	94, 534, 925, 1188
BstACI	GRCGYC	2 cut(s)	464, 905
BstAPI	GCANNNNNTGC	1 cut(s)	876
BstAUI	TGTACA	1 cut(s)	165
BstBI	TTCGAA	2 cut(s)	137, 547
BstC8I	GCNNGC	7 cut(s)	65, 125, 480, 646, 839, 877, 881
BstDEI	CTNAG	6 cut(s)	58, 111, 211, 326, 491, 1129
BstENI	CCTNNNNNAGG	1 cut(s)	793
BstF5I	GGATG	4 cut(s)	445, 574, 722, 857
BstFNI	CGCG	2 cut(s)	301, 933
BstH2I	RGCGCY	1 cut(s)	908
BstHHI	GCGC	3 cut(s)	89, 303, 907
BstKTI	GATC	3 cut(s)	598, 857, 1140
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	3 cut(s)	595, 854, 1137
BstMCI	CGRYCG	2 cut(s)	96, 271
BstNI	CCWGG	1 cut(s)	448
BstNSI	RCATGY	2 cut(s)	127, 1118
BstSCI	CCNGG	2 cut(s)	446, 1024
BstSFI	CTRYAG	3 cut(s)	183, 612, 707
BstSLI	GKGCMC	1 cut(s)	447
BstUI	CGCG	2 cut(s)	301, 933
BstV1I	GCAGC	8 cut(s)	35, 94, 533, 536, 626, 745, 766, 1007
BstZI	CGGCCG	1 cut(s)	268
Bsu36I	CCTNAGG	1 cut(s)	58
BsuI	GTATCC	1 cut(s)	958
BsuRI	GGCC	2 cut(s)	63, 270
BtgZI	GCGATG	1 cut(s)	459
BtsCI	GGATG	4 cut(s)	445, 574, 722, 857
BtsI	GCAGTG	4 cut(s)	659, 774, 870, 1056
BtsIMutI	CAGTG	7 cut(s)	659, 774, 845, 870, 891, 981, 1056
Cac8I	GCNNGC	7 cut(s)	65, 125, 480, 646, 839, 877, 881
CaiI	CAGNNNCTG	1 cut(s)	779
CfoI	GCGC	3 cut(s)	89, 303, 907
CseI	GACGC	2 cut(s)	453, 833
Csp6I	GTAC	4 cut(s)	166, 620, 965, 1171
CviAII	CATG	3 cut(s)	124, 952, 1115
CviQI	GTAC	4 cut(s)	166, 620, 965, 1171
DdeI	CTNAG	6 cut(s)	58, 111, 211, 326, 491, 1129
DinI	GGCGCC	1 cut(s)	906
DpnI	GATC	3 cut(s)	597, 856, 1139
DpnII	GATC	3 cut(s)	595, 854, 1137
EaeI	YGGCCR	1 cut(s)	268
EagI	CGGCCG	1 cut(s)	268
EciI	GGCGGA	3 cut(s)	333, 384, 436
EclXI	CGGCCG	1 cut(s)	268
Eco24I	GRGCYC	2 cut(s)	84, 809
Eco32I	GATATC	1 cut(s)	1177
Eco52I	CGGCCG	1 cut(s)	268
Eco57I	CTGAAG	2 cut(s)	687, 1142
Eco81I	CCTNAGG	1 cut(s)	58
EcoNI	CCTNNNNNAGG	1 cut(s)	793
EcoRI	GAATTC	2 cut(s)	543, 549
EcoRII	CCWGG	1 cut(s)	446
EcoRV	GATATC	1 cut(s)	1177
EcoT38I	GRGCYC	2 cut(s)	84, 809
EgeI	GGCGCC	1 cut(s)	906
EheI	GGCGCC	1 cut(s)	906
FaeI	CATG	3 cut(s)	127, 955, 1118
FalI	AAGNNNNNCTT	2 cut(s)	682, 714
FatI	CATG	3 cut(s)	123, 951, 1114
FauI	CCCGC	1 cut(s)	926
FauNDI	CATATG	1 cut(s)	1075
FokI	GGATG	4 cut(s)	452, 581, 729, 844
FriOI	GRGCYC	2 cut(s)	84, 809
FspBI	CTAG	3 cut(s)	830, 884, 1052
FspI	TGCGCA	1 cut(s)	88
GlaI	GCGC	3 cut(s)	88, 302, 906
GsaI	CCCAGC	2 cut(s)	316, 1042
GsuI	CTGGAG	2 cut(s)	187, 915
HaeII	RGCGCY	1 cut(s)	908
HaeIII	GGCC	2 cut(s)	63, 270
HapII	CCGG	3 cut(s)	554, 861, 1025
HgaI	GACGC	2 cut(s)	453, 833
HhaI	GCGC	3 cut(s)	89, 303, 907
Hin1I	GRCGYC	2 cut(s)	464, 905
Hin1II	CATG	3 cut(s)	127, 955, 1118
Hin6I	GCGC	3 cut(s)	87, 301, 905
HinP1I	GCGC	3 cut(s)	87, 301, 905
HincII	GTYRAC	1 cut(s)	471
HindII	GTYRAC	1 cut(s)	471
HindIII	AAGCTT	1 cut(s)	277
HinfI	GANTC	4 cut(s)	8, 215, 410, 589
HpaI	GTTAAC	1 cut(s)	471
HpaII	CCGG	3 cut(s)	554, 861, 1025
Hpy166II	GTNNAC	5 cut(s)	166, 168, 177, 471, 488
Hpy188I	TCNGA	4 cut(s)	214, 329, 338, 1149
Hpy188III	TCNNGA	7 cut(s)	237, 263, 554, 593, 914, 1123, 1131
Hpy8I	GTNNAC	5 cut(s)	166, 168, 177, 471, 488
Hpy99I	CGWCG	2 cut(s)	269, 469
HpyAV	CCTTC	5 cut(s)	301, 706, 814, 1162, 1166
HpyCH4III	ACNGT	4 cut(s)	94, 534, 925, 1188
HpyF3I	CTNAG	6 cut(s)	58, 111, 211, 326, 491, 1129
Hsp92I	GRCGYC	2 cut(s)	464, 905
Hsp92II	CATG	3 cut(s)	127, 955, 1118
HspAI	GCGC	3 cut(s)	87, 301, 905
KasI	GGCGCC	1 cut(s)	904
Kpn2I	TCCGGA	1 cut(s)	553
KpnI	GGTACC	1 cut(s)	968
KspAI	GTTAAC	1 cut(s)	471
Kzo9I	GATC	3 cut(s)	595, 854, 1137
Lsp1109I	GCAGC	8 cut(s)	35, 94, 533, 536, 626, 745, 766, 1007
LweI	GCATC	1 cut(s)	897
MaeI	CTAG	3 cut(s)	830, 884, 1052
MaeIII	GTNAC	3 cut(s)	34, 769, 1096
MalI	GATC	3 cut(s)	597, 856, 1139
MboI	GATC	3 cut(s)	595, 854, 1137
MboII	GAAGA	4 cut(s)	186, 225, 680, 929
MhlI	GDGCHC	3 cut(s)	84, 447, 809
MluCI	AATT	6 cut(s)	116, 246, 543, 549, 557, 909
Mly113I	GGCGCC	1 cut(s)	905
MlyI	GAGTC	3 cut(s)	17, 209, 419
MnlI	CCTC	6 cut(s)	67, 85, 262, 365, 511, 789
MroI	TCCGGA	1 cut(s)	553
MseI	TTAA	2 cut(s)	470, 689
MspA1I	CMGCKG	3 cut(s)	366, 617, 998
MspI	CCGG	3 cut(s)	554, 861, 1025
MspR9I	CCNGG	2 cut(s)	448, 1026
MvaI	CCWGG	1 cut(s)	448
MvnI	CGCG	2 cut(s)	301, 933
NarI	GGCGCC	1 cut(s)	905
NciI	CCSGG	1 cut(s)	1026
NdeI	CATATG	1 cut(s)	1075
NdeII	GATC	3 cut(s)	595, 854, 1137
NlaIII	CATG	3 cut(s)	127, 955, 1118
NlaIV	GGNNCC	4 cut(s)	696, 751, 906, 966
NmuCI	GTSAC	1 cut(s)	769
NsbI	TGCGCA	1 cut(s)	88
NspI	RCATGY	2 cut(s)	127, 1118
NspV	TTCGAA	2 cut(s)	137, 547
PaeI	GCATGC	1 cut(s)	127
PasI	CCCWGGG	1 cut(s)	447
PfeI	GAWTC	1 cut(s)	589
PflMI	CCANNNNNTGG	1 cut(s)	851
PleI	GAGTC	3 cut(s)	16, 209, 418
PluTI	GGCGCC	1 cut(s)	908
PpsI	GAGTC	3 cut(s)	16, 209, 418
Psp6I	CCWGG	1 cut(s)	446
PspFI	CCCAGC	2 cut(s)	312, 1038
PspGI	CCWGG	1 cut(s)	446
PspN4I	GGNNCC	4 cut(s)	696, 751, 906, 966
PsrI	GAACNNNNNNTAC	4 cut(s)	158, 190, 612, 644
PstI	CTGCAG	1 cut(s)	616
PstNI	CAGNNNCTG	1 cut(s)	779
PvuII	CAGCTG	2 cut(s)	617, 998
RsaI	GTAC	4 cut(s)	167, 621, 966, 1172
RsaNI	GTAC	4 cut(s)	166, 620, 965, 1171
SaqAI	TTAA	2 cut(s)	470, 689
Sau3AI	GATC	3 cut(s)	595, 854, 1137
SchI	GAGTC	3 cut(s)	17, 209, 419
ScrFI	CCNGG	2 cut(s)	448, 1026
SduI	GDGCHC	3 cut(s)	84, 447, 809
SfaNI	GCATC	1 cut(s)	897
SfcI	CTRYAG	3 cut(s)	183, 612, 707
SfoI	GGCGCC	1 cut(s)	906
SfuI	TTCGAA	2 cut(s)	137, 547
SphI	GCATGC	1 cut(s)	127
Sse9I	AATT	6 cut(s)	116, 246, 543, 549, 557, 909
SsiI	CCGC	8 cut(s)	271, 299, 344, 366, 369, 421, 433, 933
SspDI	GGCGCC	1 cut(s)	904
SspI	AATATT	1 cut(s)	46
SspMI	CTAG	3 cut(s)	830, 884, 1052
StyD4I	CCNGG	2 cut(s)	446, 1024
TaaI	ACNGT	4 cut(s)	94, 534, 925, 1188
TaqI	TCGA	5 cut(s)	137, 264, 413, 547, 594
TasI	AATT	6 cut(s)	116, 246, 543, 549, 557, 909
TatI	WGTACW	2 cut(s)	165, 619
TauI	GCSGC	3 cut(s)	273, 301, 369
TfiI	GAWTC	1 cut(s)	589
Tru1I	TTAA	2 cut(s)	470, 689
Tru9I	TTAA	2 cut(s)	470, 689
TscAI	CASTG	7 cut(s)	666, 774, 852, 877, 898, 981, 1063
TseFI	GTSAC	1 cut(s)	769
TseI	GCWGC	8 cut(s)	23, 107, 521, 524, 614, 758, 779, 995
Tsp45I	GTSAC	1 cut(s)	769
TspDTI	ATGAA	1 cut(s)	585
TspGWI	ACGGA	1 cut(s)	65
TspRI	CASTG	7 cut(s)	666, 774, 852, 877, 898, 981, 1063
Van91I	CCANNNNNTGG	1 cut(s)	851
XagI	CCTNNNNNAGG	1 cut(s)	793
XapI	RAATTY	3 cut(s)	246, 543, 549
XceI	RCATGY	2 cut(s)	127, 1118
XspI	CTAG	3 cut(s)	830, 884, 1052

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.