RchiOBHm_Chr4g0439911

CAAX protease self-immunity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0004201
Physical Location & Seq
Reverse (-)
62232421 .. 62236295
3875 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40794

Sequence Viewer

Length: 1026 bp
ATGGTTTACACCCTCTTCACATCTCTAGCTCAATCCCCCCTTCCCACTTTCTCACACACCCCCTACTTAAATCCCTCCAAAACCTTCCTCAAGCGAACCCACACACTTTTCCTCAATGGTCACACCAGGTCAAACCACCTCTCACGGCTCAGAACCACCAGGCCGCCGCCTCATGTCTGCTTTTTCAGCGGCGGAGGAAGACCCAGACCCGATTTCCAAGAAAAGGAAAATGAAGGGGGCTTGCAAATTTTGAAGAGGTGGGATGTGCCTTGGGAATGGAAAACAGTGTCATTGACATCACTGGCTTGTGGGCTGAGTTTTGTTTTGACAGGATTGGTAGAGGCAGCACTTGTACCCTATTTAGGATTGAGCATTCAGGATTTGAGTCTTGATGAGAAGGCAGAGTTTCTGTTGGTTGCTCAAGGTGTTACGACTGCAGCCATACTTGGAGTTCTGTATACCGTTGCCGGCAAATTCCAACCGCTGCCTCAAGATATTTATCGCTATGATTGGAGGGAACCTTTCAGTCTACAGAGAGGGTGGCTTTTGTGGGCTGGGATTGGTCTTGTTGCTGCTGTTGCTGCTGTGGCATTGACAGGGGCTGCCATGTCCTTTTTCAGTGGGCAAACCCCAGAAAGAGAGAAGGACGCTCTAGTTAGCTTGCTCCCATTAATTGGATCATCAAGTATTAGCACTGCTTGCTTGTTAGGCATCACTGGAGTTTTGGCTCCAATTCTTGAGGAAACTGTGTTCCGCGGGTTTTTTATGGTCTCCATGACTAAGTGGGTACCTACACCAGTTGCTGTTGTAATTAGTGCAGCTGTATTTGCACTTGCACATCTCACTCCTGGAGAGTTTCCCCAGCTGTTTGTGCTAGGTGCTGCTATGGGATTGTCGTATGCTCAAACTCGCAACCTTTTGACCCCCATCACAATACATGCTTTCTGGAACTCGGGAGTTATATTGCTTCTGACCTTCCTTCAGCTTCAAGGGTACGATATCAAGGAATTGTTGCAGGCAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abi

Protein Analysis

341

Amino Acids

37.34

Weight (kDa)

8.41

Isoelectric Point (pI)

43.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rce1-like PF02517 233 - 318 5.7e-21 Type II CAAX prenyl endopeptidase Rce1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 787
AccB1I GGYRCC 1 cut(s) 787
AccB7I CCANNNNNTGG 1 cut(s) 674
AccI GTMKAC 2 cut(s) 458, 529
AccII CGCG 1 cut(s) 756
AciI CCGC 7 cut(s) 164, 167, 189, 192, 482, 754, 756
AclWI GGATC 1 cut(s) 685
AcsI RAATTY 2 cut(s) 246, 473
AcuI CTGAAG 1 cut(s) 965
AfaI GTAC 3 cut(s) 354, 789, 995
AfiI CCNNNNNNNGG 3 cut(s) 223, 362, 674
AgsI TTSAA 2 cut(s) 253, 989
AjnI CCWGG 3 cut(s) 125, 158, 847
AloI GAACNNNNNNTCC 2 cut(s) 734, 766
AluBI AGCT 5 cut(s) 29, 660, 821, 865, 985
AluI AGCT 5 cut(s) 29, 660, 821, 865, 985
Alw26I GTCTC 1 cut(s) 775
AlwI GGATC 1 cut(s) 685
AlwNI CAGNNNCTG 2 cut(s) 602, 803
Ama87I CYCGRG 1 cut(s) 952
AoxI GGCC 1 cut(s) 161
ApeKI GCWGC 8 cut(s) 344, 437, 484, 572, 581, 602, 818, 881
ApoI RAATTY 2 cut(s) 246, 473
AseI ATTAAT 1 cut(s) 671
Asp718I GGTACC 1 cut(s) 787
AvaI CYCGRG 1 cut(s) 952
BanI GGYRCC 1 cut(s) 787
BbsI GAAGAC 1 cut(s) 205
BbvI GCAGC 8 cut(s) 356, 449, 471, 559, 568, 589, 830, 868
BccI CCATC 1 cut(s) 935
BceAI ACGGC 1 cut(s) 161
BciT130I CCWGG 3 cut(s) 127, 160, 849
BcoDI GTCTC 1 cut(s) 775
BfaI CTAG 3 cut(s) 26, 653, 875
BfmI CTRYAG 2 cut(s) 435, 530
Bme1390I CCNGG 3 cut(s) 127, 160, 849
BmeT110I CYCGRG 1 cut(s) 952
BmiI GGNNCC 3 cut(s) 519, 729, 789
BmrFI CCNGG 3 cut(s) 127, 160, 849
BmsI GCATC 1 cut(s) 720
BpiI GAAGAC 1 cut(s) 205
BpmI CTGGAG 2 cut(s) 738, 870
BpuEI CTTGAG 4 cut(s) 74, 405, 474, 758
BsaBI GATNNNNATC 1 cut(s) 498
BsaI GGTCTC 1 cut(s) 775
BsaJI CCNNGG 2 cut(s) 269, 754
Bsc4I CCNNNNNNNGG 3 cut(s) 223, 362, 674
Bse118I RCCGGY 1 cut(s) 467
Bse1I ACTGG 3 cut(s) 306, 721, 797
Bse8I GATNNNNATC 1 cut(s) 498
BseBI CCWGG 3 cut(s) 127, 160, 849
BseDI CCNNGG 2 cut(s) 269, 754
BseGI GGATG 1 cut(s) 268
BseJI GATNNNNATC 1 cut(s) 498
BseLI CCNNNNNNNGG 3 cut(s) 223, 362, 674
BseMII CTCAG 2 cut(s) 163, 305
BseNI ACTGG 3 cut(s) 306, 721, 797
BseXI GCAGC 8 cut(s) 356, 449, 471, 559, 568, 589, 830, 868
BseYI CCCAGC 2 cut(s) 554, 861
BsgI GTGCAG 1 cut(s) 837
Bsh1236I CGCG 1 cut(s) 756
BshFI GGCC 1 cut(s) 163
BshNI GGYRCC 1 cut(s) 787
BsiHKCI CYCGRG 1 cut(s) 952
BsiSI CCGG 1 cut(s) 468
BslI CCNNNNNNNGG 3 cut(s) 223, 362, 674
BsmAI GTCTC 1 cut(s) 775
BsmI GAATGC 1 cut(s) 372
BsnI GGCC 1 cut(s) 163
Bso31I GGTCTC 1 cut(s) 775
BsoBI CYCGRG 1 cut(s) 952
Bsp143I GATC 1 cut(s) 677
BspACI CCGC 7 cut(s) 164, 167, 189, 192, 482, 754, 756
BspANI GGCC 1 cut(s) 163
BspCNI CTCAG 2 cut(s) 162, 306
BspFNI CGCG 1 cut(s) 756
BspLI GGNNCC 3 cut(s) 519, 729, 789
BspMAI CTGCAG 1 cut(s) 439
BspPI GGATC 1 cut(s) 685
BspT107I GGYRCC 1 cut(s) 787
BspTNI GGTCTC 1 cut(s) 775
BsrFI RCCGGY 1 cut(s) 467
BsrI ACTGG 3 cut(s) 306, 721, 797
BssAI RCCGGY 1 cut(s) 467
BssECI CCNNGG 2 cut(s) 269, 754
BssMI GATC 1 cut(s) 677
BssNAI GTATAC 1 cut(s) 459
BssT1I CCWWGG 1 cut(s) 269
Bst1107I GTATAC 1 cut(s) 459
Bst2UI CCWGG 3 cut(s) 127, 160, 849
Bst4CI ACNGT 3 cut(s) 286, 463, 748
Bst6I CTCTTC 2 cut(s) 20, 248
BstAPI GCANNNNNTGC 1 cut(s) 699
BstC8I GCNNGC 5 cut(s) 242, 469, 662, 700, 1017
BstDEI CTNAG 3 cut(s) 149, 314, 780
BstDSI CCRYGG 1 cut(s) 754
BstF5I GGATG 1 cut(s) 268
BstFNI CGCG 1 cut(s) 756
BstKTI GATC 1 cut(s) 680
BstMAI GTCTC 1 cut(s) 775
BstMBI GATC 1 cut(s) 677
BstMWI GCNNNNNNNGC 8 cut(s) 186, 578, 581, 587, 699, 708, 827, 871
BstNI CCWGG 3 cut(s) 127, 160, 849
BstNSI RCATGY 1 cut(s) 941
BstSCI CCNGG 3 cut(s) 125, 158, 847
BstSFI CTRYAG 2 cut(s) 435, 530
BstUI CGCG 1 cut(s) 756
BstV1I GCAGC 8 cut(s) 356, 449, 471, 559, 568, 589, 830, 868
BstV2I GAAGAC 1 cut(s) 205
BstZ17I GTATAC 1 cut(s) 459
BsuRI GGCC 1 cut(s) 163
BtgI CCRYGG 1 cut(s) 754
BtsCI GGATG 1 cut(s) 268
BtsI GCAGTG 1 cut(s) 693
BtsIMutI CAGTG 5 cut(s) 291, 299, 625, 693, 714
Cac8I GCNNGC 5 cut(s) 242, 469, 662, 700, 1017
CaiI CAGNNNCTG 2 cut(s) 602, 803
Cfr10I RCCGGY 1 cut(s) 467
Cfr42I CCGCGG 1 cut(s) 757
CseI GACGC 1 cut(s) 656
CsiI ACCWGGT 1 cut(s) 125
Csp6I GTAC 3 cut(s) 353, 788, 994
CviAII CATG 4 cut(s) 173, 607, 775, 938
CviQI GTAC 3 cut(s) 353, 788, 994
DdeI CTNAG 3 cut(s) 149, 314, 780
DpnI GATC 1 cut(s) 679
DpnII GATC 1 cut(s) 677
Eam1104I CTCTTC 2 cut(s) 20, 248
EarI CTCTTC 2 cut(s) 20, 248
EciI GGCGGA 1 cut(s) 207
Eco130I CCWWGG 1 cut(s) 269
Eco31I GGTCTC 1 cut(s) 775
Eco32I GATATC 1 cut(s) 1000
Eco57I CTGAAG 1 cut(s) 965
Eco88I CYCGRG 1 cut(s) 952
EcoRII CCWGG 3 cut(s) 125, 158, 847
EcoRV GATATC 1 cut(s) 1000
EcoT14I CCWWGG 1 cut(s) 269
ErhI CCWWGG 1 cut(s) 269
FaeI CATG 4 cut(s) 176, 610, 778, 941
FatI CATG 4 cut(s) 172, 606, 774, 937
FauI CCCGC 1 cut(s) 749
FblI GTMKAC 2 cut(s) 458, 529
FokI GGATG 1 cut(s) 275
FspBI CTAG 3 cut(s) 26, 653, 875
GsaI CCCAGC 2 cut(s) 558, 865
GsuI CTGGAG 2 cut(s) 738, 870
HaeIII GGCC 1 cut(s) 163
HapII CCGG 1 cut(s) 468
HgaI GACGC 1 cut(s) 656
Hin1II CATG 4 cut(s) 176, 610, 778, 941
HinfI GANTC 1 cut(s) 385
HpaII CCGG 1 cut(s) 468
Hpy166II GTNNAC 3 cut(s) 7, 459, 530
Hpy188I TCNGA 2 cut(s) 152, 972
Hpy188III TCNNGA 6 cut(s) 377, 389, 491, 737, 946, 954
Hpy8I GTNNAC 3 cut(s) 7, 459, 530
HpyAV CCTTC 7 cut(s) 50, 94, 227, 391, 637, 985, 989
HpyCH4III ACNGT 3 cut(s) 286, 463, 748
HpyCH4V TGCA 6 cut(s) 244, 437, 818, 830, 836, 1015
HpyF10VI GCNNNNNNNGC 8 cut(s) 186, 578, 581, 587, 699, 708, 827, 871
HpyF3I CTNAG 3 cut(s) 149, 314, 780
Hsp92II CATG 4 cut(s) 176, 610, 778, 941
KpnI GGTACC 1 cut(s) 791
KroI GCCGGC 1 cut(s) 467
KroNI GCCGGC 1 cut(s) 469
KspI CCGCGG 1 cut(s) 757
Kzo9I GATC 1 cut(s) 677
LmnI GCTCC 2 cut(s) 669, 733
Lsp1109I GCAGC 8 cut(s) 356, 449, 471, 559, 568, 589, 830, 868
LweI GCATC 1 cut(s) 720
MabI ACCWGGT 1 cut(s) 125
MaeI CTAG 3 cut(s) 26, 653, 875
MaeIII GTNAC 2 cut(s) 119, 427
MalI GATC 1 cut(s) 679
MboI GATC 1 cut(s) 677
MboII GAAGA 3 cut(s) 7, 210, 265
MluCI AATT 6 cut(s) 246, 473, 672, 732, 810, 1007
MlyI GAGTC 1 cut(s) 394
MmeI TCCRAC 1 cut(s) 502
MroNI GCCGGC 1 cut(s) 467
MseI TTAA 2 cut(s) 68, 671
MspA1I CMGCKG 5 cut(s) 189, 484, 756, 821, 865
MspI CCGG 1 cut(s) 468
MspR9I CCNGG 3 cut(s) 127, 160, 849
Mva1269I GAATGC 1 cut(s) 372
MvaI CCWGG 3 cut(s) 127, 160, 849
MvnI CGCG 1 cut(s) 756
MwoI GCNNNNNNNGC 8 cut(s) 186, 578, 581, 587, 699, 708, 827, 871
NaeI GCCGGC 1 cut(s) 469
NdeII GATC 1 cut(s) 677
NgoMIV GCCGGC 1 cut(s) 467
NlaIII CATG 4 cut(s) 176, 610, 778, 941
NlaIV GGNNCC 3 cut(s) 519, 729, 789
NmuCI GTSAC 1 cut(s) 119
NspI RCATGY 1 cut(s) 941
PctI GAATGC 1 cut(s) 372
PdiI GCCGGC 1 cut(s) 469
PflMI CCANNNNNTGG 1 cut(s) 674
PfoI TCCNGGA 1 cut(s) 847
PleI GAGTC 1 cut(s) 393
PpsI GAGTC 1 cut(s) 393
PshBI ATTAAT 1 cut(s) 671
Psp6I CCWGG 3 cut(s) 125, 158, 847
PspFI CCCAGC 2 cut(s) 554, 861
PspGI CCWGG 3 cut(s) 125, 158, 847
PspN4I GGNNCC 3 cut(s) 519, 729, 789
PstI CTGCAG 1 cut(s) 439
PstNI CAGNNNCTG 2 cut(s) 602, 803
PvuII CAGCTG 2 cut(s) 821, 865
RsaI GTAC 3 cut(s) 354, 789, 995
RsaNI GTAC 3 cut(s) 353, 788, 994
SacII CCGCGG 1 cut(s) 757
SaqAI TTAA 2 cut(s) 68, 671
Sau3AI GATC 1 cut(s) 677
SchI GAGTC 1 cut(s) 394
ScrFI CCNGG 3 cut(s) 127, 160, 849
SexAI ACCWGGT 1 cut(s) 125
SfaNI GCATC 1 cut(s) 720
SfcI CTRYAG 2 cut(s) 435, 530
Sfr303I CCGCGG 1 cut(s) 757
SgrBI CCGCGG 1 cut(s) 757
SmlI CTYRAG 4 cut(s) 89, 420, 489, 737
SmoI CTYRAG 4 cut(s) 89, 420, 489, 737
Sse9I AATT 6 cut(s) 246, 473, 672, 732, 810, 1007
SsiI CCGC 7 cut(s) 164, 167, 189, 192, 482, 754, 756
SspMI CTAG 3 cut(s) 26, 653, 875
StyD4I CCNGG 3 cut(s) 125, 158, 847
StyI CCWWGG 1 cut(s) 269
TaaI ACNGT 3 cut(s) 286, 463, 748
TasI AATT 6 cut(s) 246, 473, 672, 732, 810, 1007
TauI GCSGC 3 cut(s) 166, 169, 192
Tru1I TTAA 2 cut(s) 68, 671
Tru9I TTAA 2 cut(s) 68, 671
TscAI CASTG 5 cut(s) 291, 306, 625, 700, 721
TseFI GTSAC 1 cut(s) 119
TseI GCWGC 8 cut(s) 344, 437, 484, 572, 581, 602, 818, 881
Tsp45I GTSAC 1 cut(s) 119
TspDTI ATGAA 1 cut(s) 246
TspRI CASTG 5 cut(s) 291, 306, 625, 700, 721
Van91I CCANNNNNTGG 1 cut(s) 674
VspI ATTAAT 1 cut(s) 671
XapI RAATTY 2 cut(s) 246, 473
XceI RCATGY 1 cut(s) 941
XmiI GTMKAC 2 cut(s) 458, 529
XspI CTAG 3 cut(s) 26, 653, 875
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.