Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003141

Physical Location & Seq

Genomic Coordinates Reverse (-)

32586584 .. 32587971

Gene Structure 1388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G349500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGAAGGCTTCACTTCAAGGACAAGTTATTGGAATTCCAATCAACTCAGCAGCATACGCCTTTGAGAGCTCGCCAAAGAGACTTCTACCTGACCCTGCTATTCAATATCCTGAAACTGGGCCTTCAAAACTGAGACCAACTGGTAGAGGTAATTCAGTGCTTAAGAAAATGAACAAGCTTGGGAAGAAGGCAGACAGTTTCGCGCATGGAGTCAAAGAGCATGTGAGACTGGGGCCCAAGATCACAGAAACAGTGAAGGGGAAGTTGAGCCTGGGGGCTAAAATTATTCAAGTAGGTGGGTTGGAGAAGGTGTTCAAACATGCATTTAGTGTTAGAGCTGGAGAGAAGCTGTTGAAGGTTTCTCAGTGTTATTTATCAACCACAGCAGGCCCTATAGCAGGCCTCCTCTTCATCTCCACAGACAAGATTGCCTTTTGCAGTGAGAGATCAATCAAACTCTCATCACCAAATGGAGAACTGATTAGAGTCCACTACAAGGTGGTGATCCCAGTGAATAAGATAAAGAGAGTAAACCAAAGTGAGAATGTGAAGAAGCCATCAGAAAAGTACATAGAAATAGTTACTGTGGATAATTTTGACTTCTGGTTTATGGGTTTCTTGAACTACCAGAAAACTTTGAAATATCTCGAGGAGGCAATTTCTCAAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAM

Protein Analysis

224

Amino Acids

24.62

Weight (kDa)

9.86

Isoelectric Point (pI)

30.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08350 AT5G23350 AT5G23360 AT5G23370
fragaria_vesca	FvH4_4g37190 FvH4_5g18490 FvH4_5g18490
malus_domestica	MD00G1126700.v1.1 MD13G1002900.v1.1 MD14G1246200.v1.1
prunus_persica	Prupe.1G349500_v2.0.a1 Prupe.5G244500_v2.0.a1
pyrus_communis	pycom13g00240 pycom14g20700 pycom16g00160
rosa_chinensis	RchiOBHm_Chr4g0446971 RchiOBHm_Chr7g0177021
rosa_laevigata	RLG00000005563 RLG00000005616
rosa_multiflora	Rmu_sc0001753.1_g000004 Rmu_sc0005310.1_g000031
rosa_roxburghii	Rroxscaffold_3G00276170 Rroxscaffold_5G00387300
rosa_rugosa	Rorug04G0376500 Rorug06G0402900
rosa_samantha	Rh4AG438100 Rh4BG447000 Rh4CG464300 Rh4DG445800 Rh7AG002500 Rh7AG354900 Rh7BG002800 Rh7CG002100 Rh7CG372100 Rh7DG002700
rosa_wichuraiana	Rw4G037470 Rw7G000200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	203
AclWI	GGATC	1 cut(s)	499
AcsI	RAATTY	1 cut(s)	33
AfaI	GTAC	1 cut(s)	569
AfiI	CCNNNNNNNGG	3 cut(s)	116, 398, 496
AflII	CTTAAG	1 cut(s)	161
AgsI	TTSAA	8 cut(s)	17, 104, 126, 290, 316, 355, 622, 640
AjnI	CCWGG	1 cut(s)	270
AloI	GAACNNNNNNTCC	2 cut(s)	296, 328
AluBI	AGCT	5 cut(s)	69, 178, 338, 349, 668
AluI	AGCT	5 cut(s)	69, 178, 338, 349, 668
Alw21I	GWGCWC	1 cut(s)	71
Alw26I	GTCTC	3 cut(s)	73, 127, 220
AlwI	GGATC	1 cut(s)	499
Ama87I	CYCGRG	1 cut(s)	647
AoxI	GGCC	4 cut(s)	119, 233, 388, 400
ApaI	GGGCCC	1 cut(s)	237
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	1 cut(s)	33
Asp700I	GAANNNNTTC	1 cut(s)	311
AspLEI	GCGC	1 cut(s)	205
AspS9I	GGNCC	4 cut(s)	119, 233, 234, 389
AsuHPI	GGTGA	2 cut(s)	456, 514
AvaI	CYCGRG	1 cut(s)	647
BaeGI	GKGCMC	1 cut(s)	237
BanII	GRGCYC	2 cut(s)	71, 237
Bbv12I	GWGCWC	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	1 cut(s)	565
BciT130I	CCWGG	1 cut(s)	272
BcoDI	GTCTC	3 cut(s)	73, 127, 220
BfmI	CTRYAG	1 cut(s)	393
BfrI	CTTAAG	1 cut(s)	161
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	1 cut(s)	272
BmeT110I	CYCGRG	1 cut(s)	647
BmgT120I	GGNCC	4 cut(s)	119, 233, 234, 389
BmiI	GGNNCC	2 cut(s)	234, 235
BmrFI	CCNGG	1 cut(s)	272
BmrI	ACTGGG	3 cut(s)	126, 239, 503
BmuI	ACTGGG	3 cut(s)	126, 239, 503
BpmI	CTGGAG	1 cut(s)	360
BpuEI	CTTGAG	1 cut(s)	648
BsaI	GGTCTC	1 cut(s)	127
BsaJI	CCNNGG	1 cut(s)	271
BsaXI	ACNNNNNCTCC	2 cut(s)	296, 326
Bsc4I	CCNNNNNNNGG	3 cut(s)	116, 398, 496
Bse1I	ACTGG	4 cut(s)	121, 145, 234, 509
BseBI	CCWGG	1 cut(s)	272
BseDI	CCNNGG	1 cut(s)	271
BseLI	CCNNNNNNNGG	3 cut(s)	116, 398, 496
BseMII	CTCAG	3 cut(s)	60, 122, 377
BseNI	ACTGG	4 cut(s)	121, 145, 234, 509
BseRI	GAGGAG	2 cut(s)	395, 665
BseSI	GKGCMC	1 cut(s)	237
BseXI	GCAGC	1 cut(s)	62
Bsh1236I	CGCG	1 cut(s)	203
BshFI	GGCC	4 cut(s)	121, 235, 390, 402
BsiHKAI	GWGCWC	1 cut(s)	71
BsiHKCI	CYCGRG	1 cut(s)	647
BslI	CCNNNNNNNGG	3 cut(s)	116, 398, 496
BsmAI	GTCTC	3 cut(s)	73, 127, 220
BsnI	GGCC	4 cut(s)	121, 235, 390, 402
Bso31I	GGTCTC	1 cut(s)	127
BsoBI	CYCGRG	1 cut(s)	647
Bsp120I	GGGCCC	1 cut(s)	233
Bsp1286I	GDGCHC	2 cut(s)	71, 237
Bsp143I	GATC	3 cut(s)	240, 446, 504
BspANI	GGCC	4 cut(s)	121, 235, 390, 402
BspCNI	CTCAG	3 cut(s)	59, 123, 376
BspFNI	CGCG	1 cut(s)	203
BspLI	GGNNCC	2 cut(s)	234, 235
BspPI	GGATC	1 cut(s)	499
BspTI	CTTAAG	1 cut(s)	161
BspTNI	GGTCTC	1 cut(s)	127
BsrI	ACTGG	4 cut(s)	121, 145, 234, 509
BssECI	CCNNGG	1 cut(s)	271
BssMI	GATC	3 cut(s)	240, 446, 504
Bst2UI	CCWGG	1 cut(s)	272
Bst4CI	ACNGT	3 cut(s)	197, 253, 586
Bst6I	CTCTTC	1 cut(s)	413
BstAFI	CTTAAG	1 cut(s)	161
BstC8I	GCNNGC	3 cut(s)	71, 388, 400
BstDEI	CTNAG	4 cut(s)	46, 131, 363, 669
BstENI	CCTNNNNNAGG	1 cut(s)	396
BstFNI	CGCG	1 cut(s)	203
BstHHI	GCGC	1 cut(s)	205
BstKTI	GATC	3 cut(s)	243, 449, 507
BstMAI	GTCTC	3 cut(s)	73, 127, 220
BstMBI	GATC	3 cut(s)	240, 446, 504
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstNI	CCWGG	1 cut(s)	272
BstNSI	RCATGY	2 cut(s)	224, 323
BstSCI	CCNGG	1 cut(s)	270
BstSFI	CTRYAG	1 cut(s)	393
BstSLI	GKGCMC	1 cut(s)	237
BstUI	CGCG	1 cut(s)	203
BstV1I	GCAGC	1 cut(s)	62
BsuRI	GGCC	4 cut(s)	121, 235, 390, 402
BtsI	GCAGTG	1 cut(s)	445
BtsIMutI	CAGTG	5 cut(s)	162, 258, 371, 445, 516
Cac8I	GCNNGC	3 cut(s)	71, 388, 400
CfoI	GCGC	1 cut(s)	205
Cfr13I	GGNCC	4 cut(s)	119, 233, 234, 389
Csp6I	GTAC	1 cut(s)	568
CviAII	CATG	3 cut(s)	206, 221, 320
CviQI	GTAC	1 cut(s)	568
DdeI	CTNAG	4 cut(s)	46, 131, 363, 669
DpnI	GATC	3 cut(s)	242, 448, 506
DpnII	GATC	3 cut(s)	240, 446, 504
Eam1104I	CTCTTC	1 cut(s)	413
EarI	CTCTTC	1 cut(s)	413
Ecl136II	GAGCTC	1 cut(s)	69
Eco147I	AGGCCT	1 cut(s)	402
Eco24I	GRGCYC	2 cut(s)	71, 237
Eco31I	GGTCTC	1 cut(s)	127
Eco53kI	GAGCTC	1 cut(s)	69
Eco88I	CYCGRG	1 cut(s)	647
EcoICRI	GAGCTC	1 cut(s)	69
EcoNI	CCTNNNNNAGG	1 cut(s)	396
EcoO109I	RGGNCCY	2 cut(s)	233, 389
EcoRI	GAATTC	1 cut(s)	33
EcoRII	CCWGG	1 cut(s)	270
EcoT22I	ATGCAT	1 cut(s)	325
EcoT38I	GRGCYC	2 cut(s)	71, 237
FaeI	CATG	3 cut(s)	209, 224, 323
FaiI	YATR	7 cut(s)	55, 207, 222, 321, 395, 572, 611
FalI	AAGNNNNNCTT	2 cut(s)	416, 448
FatI	CATG	3 cut(s)	205, 220, 319
Fnu4HI	GCNGC	1 cut(s)	51
FriOI	GRGCYC	2 cut(s)	71, 237
Fsp4HI	GCNGC	1 cut(s)	51
GlaI	GCGC	1 cut(s)	204
GluI	GCNGC	1 cut(s)	51
GsuI	CTGGAG	1 cut(s)	360
HaeIII	GGCC	4 cut(s)	121, 235, 390, 402
HhaI	GCGC	1 cut(s)	205
Hin1II	CATG	3 cut(s)	209, 224, 323
Hin6I	GCGC	1 cut(s)	203
HinP1I	GCGC	1 cut(s)	203
HindIII	AAGCTT	2 cut(s)	176, 666
HinfI	GANTC	2 cut(s)	210, 486
HphI	GGTGA	2 cut(s)	456, 514
Hpy166II	GTNNAC	2 cut(s)	490, 532
Hpy188I	TCNGA	1 cut(s)	562
Hpy188III	TCNNGA	3 cut(s)	110, 619, 647
Hpy8I	GTNNAC	2 cut(s)	490, 532
HpyAV	CCTTC	5 cut(s)	132, 181, 250, 301, 349
HpyCH4III	ACNGT	3 cut(s)	197, 253, 586
HpyCH4V	TGCA	2 cut(s)	323, 438
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	4 cut(s)	46, 131, 363, 669
Hsp92II	CATG	3 cut(s)	209, 224, 323
HspAI	GCGC	1 cut(s)	203
Kzo9I	GATC	3 cut(s)	240, 446, 504
Lsp1109I	GCAGC	1 cut(s)	62
MaeIII	GTNAC	1 cut(s)	580
MalI	GATC	3 cut(s)	242, 448, 506
MboI	GATC	3 cut(s)	240, 446, 504
MboII	GAAGA	3 cut(s)	196, 400, 562
MhlI	GDGCHC	2 cut(s)	71, 237
MluCI	AATT	5 cut(s)	33, 151, 282, 592, 657
MlyI	GAGTC	2 cut(s)	219, 495
MmeI	TCCRAC	1 cut(s)	282
MnlI	CCTC	5 cut(s)	140, 413, 416, 643, 646
Mph1103I	ATGCAT	1 cut(s)	325
MroXI	GAANNNNTTC	1 cut(s)	311
MseI	TTAA	1 cut(s)	162
MspCI	CTTAAG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	272
MvaI	CCWGG	1 cut(s)	272
MvnI	CGCG	1 cut(s)	203
MwoI	GCNNNNNNNGC	1 cut(s)	56
NdeII	GATC	3 cut(s)	240, 446, 504
NlaIII	CATG	3 cut(s)	209, 224, 323
NlaIV	GGNNCC	2 cut(s)	234, 235
NsiI	ATGCAT	1 cut(s)	325
NspI	RCATGY	2 cut(s)	224, 323
PaeR7I	CTCGAG	1 cut(s)	647
PceI	AGGCCT	1 cut(s)	402
PdmI	GAANNNNTTC	1 cut(s)	311
PkrI	GCNGC	1 cut(s)	52
PleI	GAGTC	2 cut(s)	218, 494
PpsI	GAGTC	2 cut(s)	218, 494
Psp124BI	GAGCTC	1 cut(s)	71
Psp6I	CCWGG	1 cut(s)	270
PspGI	CCWGG	1 cut(s)	270
PspN4I	GGNNCC	2 cut(s)	234, 235
PspOMI	GGGCCC	1 cut(s)	233
PspPI	GGNCC	4 cut(s)	119, 233, 234, 389
RsaI	GTAC	1 cut(s)	569
RsaNI	GTAC	1 cut(s)	568
SacI	GAGCTC	1 cut(s)	71
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	3 cut(s)	240, 446, 504
Sau96I	GGNCC	4 cut(s)	119, 233, 234, 389
SchI	GAGTC	2 cut(s)	219, 495
ScrFI	CCNGG	1 cut(s)	272
SduI	GDGCHC	2 cut(s)	71, 237
SfcI	CTRYAG	1 cut(s)	393
Sfr274I	CTCGAG	1 cut(s)	647
SlaI	CTCGAG	1 cut(s)	647
SmlI	CTYRAG	3 cut(s)	161, 647, 663
SmoI	CTYRAG	3 cut(s)	161, 647, 663
Sse9I	AATT	5 cut(s)	33, 151, 282, 592, 657
SseBI	AGGCCT	1 cut(s)	402
SstI	GAGCTC	1 cut(s)	71
StuI	AGGCCT	1 cut(s)	402
StyD4I	CCNGG	1 cut(s)	270
TaaI	ACNGT	3 cut(s)	197, 253, 586
TaqI	TCGA	1 cut(s)	648
TasI	AATT	5 cut(s)	33, 151, 282, 592, 657
TatI	WGTACW	1 cut(s)	567
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	5 cut(s)	162, 258, 371, 445, 516
TseI	GCWGC	1 cut(s)	50
TspDTI	ATGAA	3 cut(s)	17, 185, 400
TspRI	CASTG	5 cut(s)	162, 258, 371, 445, 516
Vha464I	CTTAAG	1 cut(s)	161
XagI	CCTNNNNNAGG	1 cut(s)	396
XapI	RAATTY	1 cut(s)	33
XceI	RCATGY	2 cut(s)	224, 323
XhoI	CTCGAG	1 cut(s)	647
XmnI	GAANNNNTTC	1 cut(s)	311
Zsp2I	ATGCAT	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.