Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0003141

Physical Location & Seq

Genomic Coordinates Forward (+)

18321186 .. 18322777

Gene Structure 1592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G244500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGAAATGAAACACCATTTTGCAGATGAATATGTTGCAAATCCGTATATGAACTCGTATGGCACAACACCAGAGACAGACAGGCAGCAGCAGCACTCTCTATCTGAACCTATCAGCTTATGCCACAGTCCATCTTCTTCAGATTGCTCTTCCTCCTTCAAAACCAATGAAGAAGGTGATTCAGGGAAAGGCCTCAACACCAAATTTGGGAAGAAAAGTAGCAGTTTCGCATACAGGATACGCGAGCACGTGAAACTTGGGCCCAAGCTGTCTGAAACTGTCAAGGGGAAGTTGAGTTTGGGGGCAAGAATTATTCAAAAGGGTGGAAGGAGGAATATATTTAAACAGATATTTGGTGTAAATGAAGGAGAGGAGCTGTTGAAGGCCTCCCAGTGCTACTTATCAACCACGGCGGGTCCTATTCCTGGCCTGCTTTTTATTTCCACTCAAAAGCTTGCTTTTTGCAGTGAAAGATCCATCTCTGTCCCTTGTGCTGCAGCTGCAACTGCAACTGGGCAAGTCGTTCGAACGCCGTACAAGGTTCAGATACCAATAAGGAAGATCAAAAGAGCTAACCAAACCGAGAATGTGAACAAACCACAACAGAAGTACATAGAAATAGTTACCGAGGATGATTTCGAGTTCTGGTTTATGGGATTCTTACGCTATGAAAAAGCTTTCAGAAATCTTGAAAAGGCCATTTCCATTACCAACCAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAM

Protein Analysis

241

Amino Acids

26.92

Weight (kDa)

9.29

Isoelectric Point (pI)

34.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08350 AT5G23350 AT5G23360 AT5G23370
fragaria_vesca	FvH4_4g37190 FvH4_5g18490 FvH4_5g18490
malus_domestica	MD00G1126700.v1.1 MD13G1002900.v1.1 MD14G1246200.v1.1
prunus_persica	Prupe.1G349500_v2.0.a1 Prupe.5G244500_v2.0.a1
pyrus_communis	pycom13g00240 pycom14g20700 pycom16g00160
rosa_chinensis	RchiOBHm_Chr4g0446971 RchiOBHm_Chr7g0177021
rosa_laevigata	RLG00000005563 RLG00000005616
rosa_multiflora	Rmu_sc0001753.1_g000004 Rmu_sc0005310.1_g000031
rosa_roxburghii	Rroxscaffold_3G00276170 Rroxscaffold_5G00387300
rosa_rugosa	Rorug04G0376500 Rorug06G0402900
rosa_samantha	Rh4AG438100 Rh4BG447000 Rh4CG464300 Rh4DG445800 Rh7AG002500 Rh7AG354900 Rh7BG002800 Rh7CG002100 Rh7CG372100 Rh7DG002700
rosa_wichuraiana	Rw4G037470 Rw7G000200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	243
AciI	CCGC	1 cut(s)	413
AclWI	GGATC	1 cut(s)	468
AcsI	RAATTY	1 cut(s)	203
AcuI	CTGAAG	1 cut(s)	123
AcvI	CACGTG	1 cut(s)	250
AfaI	GTAC	2 cut(s)	536, 611
AfiI	CCNNNNNNNGG	2 cut(s)	207, 425
AgsI	TTSAA	4 cut(s)	160, 317, 382, 692
AjnI	CCWGG	1 cut(s)	424
AjuI	GAANNNNNNNTTGG	2 cut(s)	281, 313
AluBI	AGCT	7 cut(s)	117, 268, 376, 454, 500, 572, 677
AluI	AGCT	7 cut(s)	117, 268, 376, 454, 500, 572, 677
Alw21I	GWGCWC	1 cut(s)	249
Alw26I	GTCTC	1 cut(s)	68
AlwI	GGATC	1 cut(s)	468
AoxI	GGCC	5 cut(s)	190, 260, 384, 427, 696
ApaI	GGGCCC	1 cut(s)	264
ApeKI	GCWGC	6 cut(s)	85, 88, 91, 494, 497, 500
ApoI	RAATTY	1 cut(s)	203
AspS9I	GGNCC	3 cut(s)	260, 261, 416
AsuHPI	GGTGA	1 cut(s)	188
AsuII	TTCGAA	1 cut(s)	526
AvaII	GGWCC	1 cut(s)	416
BaeGI	GKGCMC	1 cut(s)	264
BanII	GRGCYC	1 cut(s)	264
BbrPI	CACGTG	1 cut(s)	250
Bbv12I	GWGCWC	1 cut(s)	249
BbvI	GCAGC	6 cut(s)	97, 100, 103, 481, 487, 509
BccI	CCATC	2 cut(s)	139, 485
BceAI	ACGGC	2 cut(s)	426, 517
BcgI	CGANNNNNNTGC	2 cut(s)	506, 540
BciT130I	CCWGG	1 cut(s)	426
BciVI	GTATCC	1 cut(s)	231
BcoDI	GTCTC	1 cut(s)	68
BfaI	CTAG	1 cut(s)	721
BfmI	CTRYAG	1 cut(s)	495
BfuI	GTATCC	1 cut(s)	231
BisI	GCNGC	6 cut(s)	86, 89, 92, 495, 498, 501
BlsI	GCNGC	6 cut(s)	87, 90, 93, 496, 499, 502
Bme1390I	CCNGG	1 cut(s)	426
Bme18I	GGWCC	1 cut(s)	416
BmgT120I	GGNCC	3 cut(s)	260, 261, 416
BmiI	GGNNCC	2 cut(s)	262, 417
BmrFI	CCNGG	1 cut(s)	426
BmrI	ACTGGG	2 cut(s)	385, 522
BmuI	ACTGGG	2 cut(s)	385, 522
Bpu14I	TTCGAA	1 cut(s)	526
BsaAI	YACGTR	1 cut(s)	250
BsaJI	CCNNGG	2 cut(s)	408, 627
Bsc4I	CCNNNNNNNGG	2 cut(s)	207, 425
Bse1I	ACTGG	2 cut(s)	391, 517
BseBI	CCWGG	1 cut(s)	426
BseDI	CCNNGG	2 cut(s)	408, 627
BseGI	GGATG	1 cut(s)	637
BseLI	CCNNNNNNNGG	2 cut(s)	207, 425
BseNI	ACTGG	2 cut(s)	391, 517
BseRI	GAGGAG	1 cut(s)	386
BseSI	GKGCMC	1 cut(s)	264
BseXI	GCAGC	6 cut(s)	97, 100, 103, 481, 487, 509
Bsh1236I	CGCG	1 cut(s)	243
BshFI	GGCC	5 cut(s)	192, 262, 386, 429, 698
BsiHKAI	GWGCWC	1 cut(s)	249
BslFI	GGGAC	1 cut(s)	470
BslI	CCNNNNNNNGG	2 cut(s)	207, 425
BsmAI	GTCTC	1 cut(s)	68
BsmFI	GGGAC	1 cut(s)	470
BsnI	GGCC	5 cut(s)	192, 262, 386, 429, 698
Bsp119I	TTCGAA	1 cut(s)	526
Bsp120I	GGGCCC	1 cut(s)	260
Bsp1286I	GDGCHC	2 cut(s)	249, 264
Bsp143I	GATC	2 cut(s)	473, 561
BspACI	CCGC	1 cut(s)	413
BspANI	GGCC	5 cut(s)	192, 262, 386, 429, 698
BspFNI	CGCG	1 cut(s)	243
BspLI	GGNNCC	2 cut(s)	262, 417
BspMAI	CTGCAG	1 cut(s)	499
BspPI	GGATC	1 cut(s)	468
BspQI	GCTCTTC	1 cut(s)	154
BspT104I	TTCGAA	1 cut(s)	526
BsrI	ACTGG	2 cut(s)	391, 517
BssECI	CCNNGG	2 cut(s)	408, 627
BssMI	GATC	2 cut(s)	473, 561
Bst2UI	CCWGG	1 cut(s)	426
Bst4CI	ACNGT	2 cut(s)	128, 280
Bst6I	CTCTTC	1 cut(s)	154
BstBAI	YACGTR	1 cut(s)	250
BstBI	TTCGAA	1 cut(s)	526
BstC8I	GCNNGC	3 cut(s)	245, 431, 456
BstDSI	CCRYGG	1 cut(s)	408
BstF5I	GGATG	1 cut(s)	637
BstFNI	CGCG	1 cut(s)	243
BstKTI	GATC	2 cut(s)	476, 564
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	2 cut(s)	473, 561
BstMWI	GCNNNNNNNGC	3 cut(s)	91, 500, 506
BstNI	CCWGG	1 cut(s)	426
BstSCI	CCNGG	1 cut(s)	424
BstSFI	CTRYAG	1 cut(s)	495
BstSLI	GKGCMC	1 cut(s)	264
BstUI	CGCG	1 cut(s)	243
BstV1I	GCAGC	6 cut(s)	97, 100, 103, 481, 487, 509
BstX2I	RGATCY	1 cut(s)	473
BstYI	RGATCY	1 cut(s)	473
BsuI	GTATCC	1 cut(s)	231
BsuRI	GGCC	5 cut(s)	192, 262, 386, 429, 698
BtgI	CCRYGG	1 cut(s)	408
BtsCI	GGATG	1 cut(s)	637
BtsI	GCAGTG	1 cut(s)	472
BtsIMutI	CAGTG	2 cut(s)	398, 472
Cac8I	GCNNGC	3 cut(s)	245, 431, 456
Cfr13I	GGNCC	3 cut(s)	260, 261, 416
Csp6I	GTAC	2 cut(s)	535, 610
CviQI	GTAC	2 cut(s)	535, 610
DpnI	GATC	2 cut(s)	475, 563
DpnII	GATC	2 cut(s)	473, 561
DraI	TTTAAA	1 cut(s)	343
Eam1104I	CTCTTC	1 cut(s)	154
EarI	CTCTTC	1 cut(s)	154
Eco147I	AGGCCT	2 cut(s)	192, 386
Eco24I	GRGCYC	1 cut(s)	264
Eco47I	GGWCC	1 cut(s)	416
Eco57I	CTGAAG	1 cut(s)	123
Eco72I	CACGTG	1 cut(s)	250
EcoO109I	RGGNCCY	1 cut(s)	416
EcoRII	CCWGG	1 cut(s)	424
EcoT38I	GRGCYC	1 cut(s)	264
FaqI	GGGAC	1 cut(s)	470
FauI	CCCGC	1 cut(s)	406
Fnu4HI	GCNGC	6 cut(s)	86, 89, 92, 495, 498, 501
FokI	GGATG	1 cut(s)	644
FriOI	GRGCYC	1 cut(s)	264
Fsp4HI	GCNGC	6 cut(s)	86, 89, 92, 495, 498, 501
FspBI	CTAG	1 cut(s)	721
GluI	GCNGC	6 cut(s)	86, 89, 92, 495, 498, 501
HaeIII	GGCC	5 cut(s)	192, 262, 386, 429, 698
HindIII	AAGCTT	2 cut(s)	452, 675
HinfI	GANTC	2 cut(s)	179, 657
HphI	GGTGA	1 cut(s)	188
Hpy166II	GTNNAC	1 cut(s)	592
Hpy188I	TCNGA	5 cut(s)	106, 142, 274, 546, 683
Hpy188III	TCNNGA	1 cut(s)	689
Hpy8I	GTNNAC	1 cut(s)	592
HpyAV	CCTTC	5 cut(s)	166, 167, 321, 359, 376
HpyCH4III	ACNGT	2 cut(s)	128, 280
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	6 cut(s)	23, 38, 465, 497, 503, 509
HpyF10VI	GCNNNNNNNGC	3 cut(s)	91, 500, 506
HpySE526I	ACGT	1 cut(s)	249
Kzo9I	GATC	2 cut(s)	473, 561
LguI	GCTCTTC	1 cut(s)	154
LmnI	GCTCC	1 cut(s)	373
Lsp1109I	GCAGC	6 cut(s)	97, 100, 103, 481, 487, 509
MaeI	CTAG	1 cut(s)	721
MaeII	ACGT	1 cut(s)	249
MaeIII	GTNAC	1 cut(s)	622
MalI	GATC	2 cut(s)	475, 563
MboI	GATC	2 cut(s)	473, 561
MboII	GAAGA	6 cut(s)	126, 129, 141, 182, 223, 571
MflI	RGATCY	1 cut(s)	473
MhlI	GDGCHC	2 cut(s)	249, 264
MluCI	AATT	2 cut(s)	203, 309
MnlI	CCTC	6 cut(s)	163, 203, 324, 364, 397, 622
MseI	TTAA	1 cut(s)	342
MspA1I	CMGCKG	1 cut(s)	500
MspR9I	CCNGG	1 cut(s)	426
MvaI	CCWGG	1 cut(s)	426
MvnI	CGCG	1 cut(s)	243
MwoI	GCNNNNNNNGC	3 cut(s)	91, 500, 506
NdeII	GATC	2 cut(s)	473, 561
NlaIV	GGNNCC	2 cut(s)	262, 417
NspV	TTCGAA	1 cut(s)	526
PceI	AGGCCT	2 cut(s)	192, 386
PciSI	GCTCTTC	1 cut(s)	154
PfeI	GAWTC	2 cut(s)	179, 657
PkrI	GCNGC	6 cut(s)	87, 90, 93, 496, 499, 502
PmaCI	CACGTG	1 cut(s)	250
PmlI	CACGTG	1 cut(s)	250
Ppu21I	YACGTR	1 cut(s)	250
PpuMI	RGGWCCY	1 cut(s)	416
Psp5II	RGGWCCY	1 cut(s)	416
Psp6I	CCWGG	1 cut(s)	424
PspCI	CACGTG	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	424
PspN4I	GGNNCC	2 cut(s)	262, 417
PspOMI	GGGCCC	1 cut(s)	260
PspPI	GGNCC	3 cut(s)	260, 261, 416
PspPPI	RGGWCCY	1 cut(s)	416
PstI	CTGCAG	1 cut(s)	499
PsuI	RGATCY	1 cut(s)	473
PvuII	CAGCTG	1 cut(s)	500
RsaI	GTAC	2 cut(s)	536, 611
RsaNI	GTAC	2 cut(s)	535, 610
SapI	GCTCTTC	1 cut(s)	154
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	6 cut(s)	86, 89, 92, 495, 498, 501
Sau3AI	GATC	2 cut(s)	473, 561
Sau96I	GGNCC	3 cut(s)	260, 261, 416
ScrFI	CCNGG	1 cut(s)	426
SduI	GDGCHC	2 cut(s)	249, 264
SfcI	CTRYAG	1 cut(s)	495
SfuI	TTCGAA	1 cut(s)	526
SinI	GGWCC	1 cut(s)	416
Sse9I	AATT	2 cut(s)	203, 309
SseBI	AGGCCT	2 cut(s)	192, 386
SsiI	CCGC	1 cut(s)	413
SspMI	CTAG	1 cut(s)	721
StuI	AGGCCT	2 cut(s)	192, 386
StyD4I	CCNGG	1 cut(s)	424
TaaI	ACNGT	2 cut(s)	128, 280
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	2 cut(s)	526, 639
TasI	AATT	2 cut(s)	203, 309
TatI	WGTACW	1 cut(s)	609
TfiI	GAWTC	2 cut(s)	179, 657
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	2 cut(s)	398, 472
TseI	GCWGC	6 cut(s)	85, 88, 91, 494, 497, 500
TspDTI	ATGAA	6 cut(s)	23, 42, 65, 183, 378, 684
TspGWI	ACGGA	1 cut(s)	33
TspRI	CASTG	2 cut(s)	398, 472
VpaK11BI	GGWCC	1 cut(s)	416
XapI	RAATTY	1 cut(s)	203
XspI	CTAG	1 cut(s)	721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.