Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0003141

Physical Location & Seq

Genomic Coordinates Forward (+)

21703188 .. 21704200

Gene Structure 1013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g20700.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAATGAGAAATTTGCAGATCAATTTGTTGCCAGTAGCAGTCCGTACATGATGCACTCATATGATTATGATAGTGATACAACACCAGAAAGGCAAAGCCAAAGCCAAAGGCAGGCATCTTCTCTATCTGAACCTATCAGCTTATGCCATAGTCCTTCTGCACACTCATCTTCCTCCTTCAAAACCACCTCCACCTATGGAGATGATTCGAGGAAAGGCCTCAACAAAAAATTAGGGAAGCAAAGTAGCAGTTTCGCATACAGGATACGCGACCACGTGAAACTTGGGCACAAGCTGTCAGAAACAGTGAAGGGCAAGTTGAGTTTGGGGGCAAGAATCATTCAAGAGGGTGGGAGGGCCAATATTTTTAAACAGATATTCGGTGTCAGTCAAGGAGAAGAGCTTTTGAAGGCCTCCCAATGCTACCTATCTACCACCGCCGGTCCCATTCCTGGCCTCCTTTTCATTTCTACCCAAAAGCTTGCTTTTTGCAGCGAAAGACCCATCACTCTCCCTTCTTCTCCTTCTGCTTCTGCTCCTGCTGCTGCTGGACAACTCCAACCCCTCAGAACGCATTACAAAGTTCAGATACCAATAAGGAAGATCAAAACAGCGAACCAAAGCGAGAATGTCAACAAACCACAACAGAAGTACATTGAAATTGTTACCCAAGATGATTTCGACTTCTGGTTCATGGGATTCTTGCGCTACGAGAAAGCTTTCAGAAATCTTCACAAGGCCCTTTCCATTGCCAGCCACAACCAGTCCCACAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAM

Protein Analysis

259

Amino Acids

28.73

Weight (kDa)

9.55

Isoelectric Point (pI)

63.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08350 AT5G23350 AT5G23360 AT5G23370
fragaria_vesca	FvH4_4g37190 FvH4_5g18490 FvH4_5g18490
malus_domestica	MD00G1126700.v1.1 MD13G1002900.v1.1 MD14G1246200.v1.1
prunus_persica	Prupe.1G349500_v2.0.a1 Prupe.5G244500_v2.0.a1
pyrus_communis	pycom13g00240 pycom14g20700 pycom16g00160
rosa_chinensis	RchiOBHm_Chr4g0446971 RchiOBHm_Chr7g0177021
rosa_laevigata	RLG00000005563 RLG00000005616
rosa_multiflora	Rmu_sc0001753.1_g000004 Rmu_sc0005310.1_g000031
rosa_roxburghii	Rroxscaffold_3G00276170 Rroxscaffold_5G00387300
rosa_rugosa	Rorug04G0376500 Rorug06G0402900
rosa_samantha	Rh4AG438100 Rh4BG447000 Rh4CG464300 Rh4DG445800 Rh7AG002500 Rh7AG354900 Rh7BG002800 Rh7CG002100 Rh7CG372100 Rh7DG002700
rosa_wichuraiana	Rw4G037470 Rw7G000200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	270
AciI	CCGC	1 cut(s)	438
AcsI	RAATTY	1 cut(s)	11
AcvI	CACGTG	1 cut(s)	277
AfaI	GTAC	2 cut(s)	47, 653
AfiI	CCNNNNNNNGG	2 cut(s)	112, 452
AgsI	TTSAA	4 cut(s)	181, 344, 409, 659
AjnI	CCWGG	1 cut(s)	451
AluBI	AGCT	5 cut(s)	141, 295, 403, 481, 719
AluI	AGCT	5 cut(s)	141, 295, 403, 481, 719
AoxI	GGCC	5 cut(s)	217, 357, 411, 454, 738
ApeKI	GCWGC	3 cut(s)	492, 542, 545
ApoI	RAATTY	1 cut(s)	11
Asp700I	GAANNNNTTC	1 cut(s)	719
AspLEI	GCGC	1 cut(s)	708
AspS9I	GGNCC	3 cut(s)	357, 443, 739
AvaII	GGWCC	1 cut(s)	443
BaeGI	GKGCMC	1 cut(s)	291
BbrPI	CACGTG	1 cut(s)	277
BbvI	GCAGC	3 cut(s)	504, 529, 532
BccI	CCATC	1 cut(s)	512
BciT130I	CCWGG	1 cut(s)	453
BciVI	GTATCC	1 cut(s)	258
BfaI	CTAG	1 cut(s)	775
BfuI	GTATCC	1 cut(s)	258
BisI	GCNGC	3 cut(s)	493, 543, 546
BlsI	GCNGC	3 cut(s)	494, 544, 547
Bme1390I	CCNGG	1 cut(s)	453
Bme18I	GGWCC	1 cut(s)	443
BmgT120I	GGNCC	3 cut(s)	357, 443, 739
BmiI	GGNNCC	1 cut(s)	445
BmrFI	CCNGG	1 cut(s)	453
BmsI	GCATC	2 cut(s)	42, 125
BsaAI	YACGTR	1 cut(s)	277
Bsc4I	CCNNNNNNNGG	2 cut(s)	112, 452
Bse118I	RCCGGY	1 cut(s)	440
Bse1I	ACTGG	2 cut(s)	33, 763
Bse3DI	GCAATG	1 cut(s)	747
BseBI	CCWGG	1 cut(s)	453
BseLI	CCNNNNNNNGG	2 cut(s)	112, 452
BseMI	GCAATG	1 cut(s)	747
BseMII	CTCAG	1 cut(s)	580
BseNI	ACTGG	2 cut(s)	33, 763
BseSI	GKGCMC	1 cut(s)	291
BseXI	GCAGC	3 cut(s)	504, 529, 532
BsgI	GTGCAG	1 cut(s)	144
Bsh1236I	CGCG	1 cut(s)	270
BshFI	GGCC	5 cut(s)	219, 359, 413, 456, 740
BsiSI	CCGG	1 cut(s)	441
BslFI	GGGAC	2 cut(s)	429, 751
BslI	CCNNNNNNNGG	2 cut(s)	112, 452
BsmFI	GGGAC	2 cut(s)	429, 751
BsnI	GGCC	5 cut(s)	219, 359, 413, 456, 740
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp143I	GATC	2 cut(s)	19, 603
BspACI	CCGC	1 cut(s)	438
BspANI	GGCC	5 cut(s)	219, 359, 413, 456, 740
BspCNI	CTCAG	1 cut(s)	579
BspFNI	CGCG	1 cut(s)	270
BspLI	GGNNCC	1 cut(s)	445
BspQI	GCTCTTC	1 cut(s)	393
BsrDI	GCAATG	1 cut(s)	747
BsrFI	RCCGGY	1 cut(s)	440
BsrI	ACTGG	2 cut(s)	33, 763
BssAI	RCCGGY	1 cut(s)	440
BssMI	GATC	2 cut(s)	19, 603
Bst2UI	CCWGG	1 cut(s)	453
Bst4CI	ACNGT	1 cut(s)	307
Bst6I	CTCTTC	1 cut(s)	393
BstBAI	YACGTR	1 cut(s)	277
BstC8I	GCNNGC	3 cut(s)	114, 483, 754
BstDEI	CTNAG	1 cut(s)	566
BstFNI	CGCG	1 cut(s)	270
BstHHI	GCGC	1 cut(s)	708
BstKTI	GATC	2 cut(s)	22, 606
BstMBI	GATC	2 cut(s)	19, 603
BstMWI	GCNNNNNNNGC	1 cut(s)	542
BstNI	CCWGG	1 cut(s)	453
BstSCI	CCNGG	1 cut(s)	451
BstSLI	GKGCMC	1 cut(s)	291
BstUI	CGCG	1 cut(s)	270
BstV1I	GCAGC	3 cut(s)	504, 529, 532
BsuI	GTATCC	1 cut(s)	258
BsuRI	GGCC	5 cut(s)	219, 359, 413, 456, 740
BtsIMutI	CAGTG	1 cut(s)	312
Cac8I	GCNNGC	3 cut(s)	114, 483, 754
CfoI	GCGC	1 cut(s)	708
Cfr10I	RCCGGY	1 cut(s)	440
Cfr13I	GGNCC	3 cut(s)	357, 443, 739
Csp6I	GTAC	2 cut(s)	46, 652
CviAII	CATG	2 cut(s)	49, 694
CviQI	GTAC	2 cut(s)	46, 652
DdeI	CTNAG	1 cut(s)	566
DpnI	GATC	2 cut(s)	21, 605
DpnII	GATC	2 cut(s)	19, 603
DraI	TTTAAA	1 cut(s)	370
Eam1104I	CTCTTC	1 cut(s)	393
EarI	CTCTTC	1 cut(s)	393
Eco147I	AGGCCT	2 cut(s)	219, 413
Eco47I	GGWCC	1 cut(s)	443
Eco72I	CACGTG	1 cut(s)	277
EcoO109I	RGGNCCY	1 cut(s)	739
EcoRII	CCWGG	1 cut(s)	451
FaeI	CATG	2 cut(s)	52, 697
FaiI	YATR	9 cut(s)	50, 61, 63, 69, 145, 150, 198, 259, 695
FaqI	GGGAC	2 cut(s)	429, 751
FatI	CATG	2 cut(s)	48, 693
FauNDI	CATATG	1 cut(s)	61
Fnu4HI	GCNGC	3 cut(s)	493, 543, 546
Fsp4HI	GCNGC	3 cut(s)	493, 543, 546
FspBI	CTAG	1 cut(s)	775
GlaI	GCGC	1 cut(s)	707
GluI	GCNGC	3 cut(s)	493, 543, 546
HaeIII	GGCC	5 cut(s)	219, 359, 413, 456, 740
HapII	CCGG	1 cut(s)	441
HhaI	GCGC	1 cut(s)	708
Hin1II	CATG	2 cut(s)	52, 697
Hin6I	GCGC	1 cut(s)	706
HinP1I	GCGC	1 cut(s)	706
HincII	GTYRAC	1 cut(s)	634
HindII	GTYRAC	1 cut(s)	634
HindIII	AAGCTT	2 cut(s)	479, 717
HinfI	GANTC	3 cut(s)	206, 336, 699
HpaII	CCGG	1 cut(s)	441
Hpy166II	GTNNAC	1 cut(s)	634
Hpy188I	TCNGA	5 cut(s)	130, 301, 569, 588, 725
Hpy188III	TCNNGA	1 cut(s)	344
Hpy8I	GTNNAC	1 cut(s)	634
HpyAV	CCTTC	6 cut(s)	165, 187, 304, 403, 525, 534
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	4 cut(s)	17, 55, 161, 492
HpyF10VI	GCNNNNNNNGC	1 cut(s)	542
HpyF3I	CTNAG	1 cut(s)	566
HpySE526I	ACGT	1 cut(s)	276
Hsp92II	CATG	2 cut(s)	52, 697
HspAI	GCGC	1 cut(s)	706
Kzo9I	GATC	2 cut(s)	19, 603
LguI	GCTCTTC	1 cut(s)	393
LmnI	GCTCC	1 cut(s)	541
Lsp1109I	GCAGC	3 cut(s)	504, 529, 532
LweI	GCATC	2 cut(s)	42, 125
MaeI	CTAG	1 cut(s)	775
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	1 cut(s)	664
MalI	GATC	2 cut(s)	21, 605
MboI	GATC	2 cut(s)	19, 603
MboII	GAAGA	6 cut(s)	111, 162, 410, 510, 613, 722
MhlI	GDGCHC	1 cut(s)	291
MluCI	AATT	4 cut(s)	11, 23, 230, 660
MmeI	TCCRAC	1 cut(s)	583
MnlI	CCTC	9 cut(s)	184, 199, 204, 230, 340, 348, 424, 467, 575
MroXI	GAANNNNTTC	1 cut(s)	719
MseI	TTAA	1 cut(s)	369
MslI	CAYNNNNRTG	1 cut(s)	60
MspI	CCGG	1 cut(s)	441
MspR9I	CCNGG	1 cut(s)	453
MvaI	CCWGG	1 cut(s)	453
MvnI	CGCG	1 cut(s)	270
MwoI	GCNNNNNNNGC	1 cut(s)	542
NdeI	CATATG	1 cut(s)	61
NdeII	GATC	2 cut(s)	19, 603
NlaIII	CATG	2 cut(s)	52, 697
NlaIV	GGNNCC	1 cut(s)	445
PceI	AGGCCT	2 cut(s)	219, 413
PciSI	GCTCTTC	1 cut(s)	393
PdmI	GAANNNNTTC	1 cut(s)	719
PfeI	GAWTC	3 cut(s)	206, 336, 699
PkrI	GCNGC	3 cut(s)	494, 544, 547
PmaCI	CACGTG	1 cut(s)	277
PmlI	CACGTG	1 cut(s)	277
Ppu21I	YACGTR	1 cut(s)	277
Psp6I	CCWGG	1 cut(s)	451
PspCI	CACGTG	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	451
PspN4I	GGNNCC	1 cut(s)	445
PspPI	GGNCC	3 cut(s)	357, 443, 739
RsaI	GTAC	2 cut(s)	47, 653
RsaNI	GTAC	2 cut(s)	46, 652
RseI	CAYNNNNRTG	1 cut(s)	60
SapI	GCTCTTC	1 cut(s)	393
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	3 cut(s)	493, 543, 546
Sau3AI	GATC	2 cut(s)	19, 603
Sau96I	GGNCC	3 cut(s)	357, 443, 739
ScrFI	CCNGG	1 cut(s)	453
SduI	GDGCHC	1 cut(s)	291
SfaNI	GCATC	2 cut(s)	42, 125
SinI	GGWCC	1 cut(s)	443
SmiMI	CAYNNNNRTG	1 cut(s)	60
Sse9I	AATT	4 cut(s)	11, 23, 230, 660
SseBI	AGGCCT	2 cut(s)	219, 413
SsiI	CCGC	1 cut(s)	438
SspI	AATATT	1 cut(s)	364
SspMI	CTAG	1 cut(s)	775
StuI	AGGCCT	2 cut(s)	219, 413
StyD4I	CCNGG	1 cut(s)	451
TaaI	ACNGT	1 cut(s)	307
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	2 cut(s)	209, 681
TasI	AATT	4 cut(s)	11, 23, 230, 660
TatI	WGTACW	1 cut(s)	651
TfiI	GAWTC	3 cut(s)	206, 336, 699
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TscAI	CASTG	1 cut(s)	312
TseI	GCWGC	3 cut(s)	492, 542, 545
TspDTI	ATGAA	3 cut(s)	17, 454, 682
TspGWI	ACGGA	1 cut(s)	33
TspRI	CASTG	1 cut(s)	312
VpaK11BI	GGWCC	1 cut(s)	443
XapI	RAATTY	1 cut(s)	11
XcmI	CCANNNNNNNNNTGG	1 cut(s)	281
XmnI	GAANNNNTTC	1 cut(s)	719
XspI	CTAG	1 cut(s)	775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.