Rh7CG372100

GEM-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0003141
Physical Location & Seq
Reverse (-)
46817170 .. 46817490
321 bp
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UTR
Exon/CDS
Intron
Rh7CG372100.1

Sequence Viewer

Length: 321 bp
ATGAAGGTGTTCAAGCATTTGTTTAGTAATAATGATAAAGCAGCAAGAGAGAAGCTTTTGAGGACTTCTCACTGTTATCTATCAACCACAACAGGTCTTATTGCAGGTCTCCTCTTCATCTCCACACACAAGATTGCCTTCTGCAGTGATAAGCCAATCAAACTGTCATCATTGCCAAATCCAAATGGACAACTCATCAGAGTCCACTACAAGGTTGTGATCCCACTCAATAAGATAAACAGAGTAAACCAGAGCGAGGATGTGAAGAAGCCATCACAGAAGTACATAGAAGCTATCACAATTATCTCCAACAAGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAM

Protein Analysis

106

Amino Acids

12.01

Weight (kDa)

10.01

Isoelectric Point (pI)

27.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAM PF02893 4 - 101 1.5e-09 GRAM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 95
AclWI GGATC 1 cut(s) 214
AfaI GTAC 1 cut(s) 284
AfiI CCNNNNNNNGG 2 cut(s) 211, 256
AgsI TTSAA 1 cut(s) 13
AluBI AGCT 2 cut(s) 55, 293
AluI AGCT 2 cut(s) 55, 293
Alw26I GTCTC 1 cut(s) 113
AlwI GGATC 1 cut(s) 214
ApeKI GCWGC 1 cut(s) 41
Asp700I GAANNNNTTC 1 cut(s) 8
BbvI GCAGC 1 cut(s) 53
BccI CCATC 1 cut(s) 280
BcoDI GTCTC 1 cut(s) 113
BfmI CTRYAG 1 cut(s) 142
BfuAI ACCTGC 1 cut(s) 95
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
BplI GAGNNNNNCTC 2 cut(s) 52, 84
BsaI GGTCTC 1 cut(s) 113
Bsc4I CCNNNNNNNGG 2 cut(s) 211, 256
Bse3DI GCAATG 1 cut(s) 170
BseGI GGATG 1 cut(s) 265
BseLI CCNNNNNNNGG 2 cut(s) 211, 256
BseMI GCAATG 1 cut(s) 170
BseRI GAGGAG 1 cut(s) 101
BseXI GCAGC 1 cut(s) 53
BslI CCNNNNNNNGG 2 cut(s) 211, 256
BsmAI GTCTC 1 cut(s) 113
Bso31I GGTCTC 1 cut(s) 113
Bsp143I GATC 1 cut(s) 219
BspMAI CTGCAG 1 cut(s) 146
BspMI ACCTGC 1 cut(s) 95
BspPI GGATC 1 cut(s) 214
BspTNI GGTCTC 1 cut(s) 113
BsrDI GCAATG 1 cut(s) 170
BssMI GATC 1 cut(s) 219
Bst4CI ACNGT 2 cut(s) 74, 165
Bst6I CTCTTC 1 cut(s) 119
BstF5I GGATG 1 cut(s) 265
BstKTI GATC 1 cut(s) 222
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 1 cut(s) 219
BstSFI CTRYAG 1 cut(s) 142
BstV1I GCAGC 1 cut(s) 53
BtsCI GGATG 1 cut(s) 265
BtsI GCAGTG 1 cut(s) 151
BtsIMutI CAGTG 2 cut(s) 70, 151
BveI ACCTGC 1 cut(s) 95
Csp6I GTAC 1 cut(s) 283
CviJI RGCY 4 cut(s) 55, 154, 271, 293
CviKI_1 RGCY 4 cut(s) 55, 154, 271, 293
CviQI GTAC 1 cut(s) 283
DpnI GATC 1 cut(s) 221
DpnII GATC 1 cut(s) 219
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
Eco31I GGTCTC 1 cut(s) 113
FaiI YATR 1 cut(s) 287
FalI AAGNNNNNCTT 2 cut(s) 122, 154
Fnu4HI GCNGC 1 cut(s) 42
FokI GGATG 1 cut(s) 272
Fsp4HI GCNGC 1 cut(s) 42
GluI GCNGC 1 cut(s) 42
HindIII AAGCTT 1 cut(s) 53
HinfI GANTC 1 cut(s) 201
Hpy166II GTNNAC 2 cut(s) 205, 247
Hpy188I TCNGA 1 cut(s) 200
Hpy8I GTNNAC 2 cut(s) 205, 247
HpyAV CCTTC 1 cut(s) 148
HpyCH4III ACNGT 2 cut(s) 74, 165
HpyCH4V TGCA 2 cut(s) 104, 144
Kzo9I GATC 1 cut(s) 219
LpnPI CCDG 3 cut(s) 78, 90, 263
Lsp1109I GCAGC 1 cut(s) 53
MalI GATC 1 cut(s) 221
MboI GATC 1 cut(s) 219
MboII GAAGA 2 cut(s) 106, 277
MluCI AATT 1 cut(s) 300
MlyI GAGTC 1 cut(s) 210
MnlI CCTC 3 cut(s) 54, 122, 250
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 1 cut(s) 319
NdeII GATC 1 cut(s) 219
PdmI GAANNNNTTC 1 cut(s) 8
PkrI GCNGC 1 cut(s) 43
PleI GAGTC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 209
PstI CTGCAG 1 cut(s) 146
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
SaqAI TTAA 1 cut(s) 319
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 1 cut(s) 219
SchI GAGTC 1 cut(s) 210
SetI ASST 6 cut(s) 9, 57, 97, 109, 216, 295
SfcI CTRYAG 1 cut(s) 142
SgeI CNNG 8 cut(s) 25, 57, 105, 117, 142, 223, 262, 268
Sse9I AATT 1 cut(s) 300
TaaI ACNGT 2 cut(s) 74, 165
TasI AATT 1 cut(s) 300
TatI WGTACW 1 cut(s) 282
Tru1I TTAA 1 cut(s) 319
Tru9I TTAA 1 cut(s) 319
TscAI CASTG 2 cut(s) 77, 151
TseI GCWGC 1 cut(s) 41
TspDTI ATGAA 2 cut(s) 17, 106
TspRI CASTG 2 cut(s) 77, 151
XmnI GAANNNNTTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.