Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003153

Physical Location & Seq

Genomic Coordinates Reverse (-)

15582621 .. 15587473

Gene Structure 4853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G143700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGTGGTATGCTGTCTCTGCCCCACACTGTTGCATATCATATCCAAGAAGACCTTGTAGCCCTCGTTTTCTAAGAAAGTGTTCAGTTCCAACGAGTTTTTGTGTGCAAGCTTCCTTGCCGGAGAATAACAATGGTGCTAAAGTGGAGTACACTCCTTGGCTGATTGTTGGATTGGGTAACCCTGGCAATAAGTACCATGGCACCAGGCACAATATTGGTTTTGAGATGATTGACAGTATCGCTAAAACGCAAGGTGTTGTGATGAATACCATTCAGTCAAAGGCCTTGGTTGGAATAGGTTCCATTGGAGAGGTACCGATTTTGTTGGCGAAGCCTCAAGCCTACATGAATTACAGTGGGGAATCGGTTGGACCACTTGCGGCATATTATCAAGTGCCCCTACGTCATATTTTACTGGTTTATGATGAGATGAGCTTACCAAATGGTGTTCTGAGGATTCAGCCAAAAGGAGGACATGGATATCACAATGGTGTGAAGAGTGTAATGGGCCATCTGGACGGTTGCCGCGAATTTCCTCGGTTGTGTATAGGTATTGGAAATCCGCCTGGAACTATGGACATGAAAGCCTATCTTCTACAGAGGTTCAGTACAGTAGAGAGACATCAGATTGATGCAGCACTGGATCAAGGGGTTGAGGCTGTAAGAACCCTGGTGCTGAATGGATTTGACCAGAGTATCACTAGTTTTAATTTGAGGCAGAAATACAAATATCACAAAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004045 GO:0016787 GO:0016788 GO:0052689 GO:0140098 GO:0140101

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pept_tRNA_hydro

Protein Analysis

248

Amino Acids

27.35

Weight (kDa)

9.23

Isoelectric Point (pI)

41.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003153)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16140 AT5G16140
fragaria_vesca	FvH4_5g29670 FvH4_5g29670 FvH4_5g29670 FvH4_5g29670
malus_domestica	MD17G1245600.v1.1
prunus_persica	Prupe.3G143700_v2.0.a1 Prupe.3G143700_v2.0.a1 Prupe.3G143700_v2.0.a1 Prupe.3G143700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0119421 RchiOBHm_Chr3g0480441 RchiOBHm_Chr5g0050971 RchiOBHm_Chr7g0222961
rosa_laevigata	RLG00000002007
rosa_multiflora	Rmu_sc0006514.1_g000012
rosa_roxburghii	Rroxscaffold_3G00236370
rosa_rugosa	Rorug01G0154500.1 Rorug02G0410900 Rorug04G0216900 Rorug04G0217000 Rorug05G0540000 Rorug06G0089000 Rorug06G0151900 Rorug07G0212500 Rorug07G0212500
rosa_samantha	Rh2CG270800 Rh4BG080600 Rh4BG193100 Rh5BG133000 Rh5BG347100 Rh7AG357600 Rh7BG345800 Rh7CG375700 Rh7DG352400
rosa_wichuraiana	Rw7G030410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	313
AccB1I	GGYRCC	2 cut(s)	200, 313
AccII	CGCG	1 cut(s)	528
AciI	CCGC	3 cut(s)	380, 526, 563
AclWI	GGATC	1 cut(s)	651
AcsI	RAATTY	1 cut(s)	530
AdeI	CACNNNGTG	1 cut(s)	739
AfaI	GTAC	4 cut(s)	149, 194, 315, 610
AfiI	CCNNNNNNNGG	1 cut(s)	470
AhlI	ACTAGT	1 cut(s)	701
AjnI	CCWGG	4 cut(s)	181, 203, 565, 669
AleI	CACNNNNGTG	1 cut(s)	489
AluBI	AGCT	2 cut(s)	110, 435
AluI	AGCT	2 cut(s)	110, 435
Alw26I	GTCTC	2 cut(s)	19, 613
AlwI	GGATC	1 cut(s)	651
AoxI	GGCC	2 cut(s)	282, 508
ApeKI	GCWGC	1 cut(s)	635
ApoI	RAATTY	1 cut(s)	530
Asp700I	GAANNNNTTC	2 cut(s)	79, 298
Asp718I	GGTACC	1 cut(s)	313
AspS9I	GGNCC	2 cut(s)	371, 508
AvaII	GGWCC	1 cut(s)	371
BaeGI	GKGCMC	1 cut(s)	399
BaeI	ACNNNNGTAYC	2 cut(s)	679, 712
BanI	GGYRCC	2 cut(s)	200, 313
BbsI	GAAGAC	1 cut(s)	55
BbvI	GCAGC	1 cut(s)	647
BccI	CCATC	1 cut(s)	519
BciT130I	CCWGG	4 cut(s)	183, 205, 567, 671
BcoDI	GTCTC	2 cut(s)	19, 613
BcuI	ACTAGT	1 cut(s)	701
BfaI	CTAG	1 cut(s)	702
BfmI	CTRYAG	1 cut(s)	596
BisI	GCNGC	3 cut(s)	381, 526, 636
BlsI	GCNGC	3 cut(s)	382, 527, 637
Bme1390I	CCNGG	4 cut(s)	183, 205, 567, 671
Bme18I	GGWCC	1 cut(s)	371
BmgT120I	GGNCC	2 cut(s)	371, 508
BmiI	GGNNCC	3 cut(s)	202, 301, 315
BmrFI	CCNGG	4 cut(s)	183, 205, 567, 671
BmsI	GCATC	1 cut(s)	622
BpiI	GAAGAC	1 cut(s)	55
BpuEI	CTTGAG	1 cut(s)	321
BsaJI	CCNNGG	6 cut(s)	155, 181, 196, 285, 536, 669
Bsc4I	CCNNNNNNNGG	1 cut(s)	470
Bse1I	ACTGG	2 cut(s)	420, 645
BseBI	CCWGG	4 cut(s)	183, 205, 567, 671
BseDI	CCNNGG	6 cut(s)	155, 181, 196, 285, 536, 669
BseLI	CCNNNNNNNGG	1 cut(s)	470
BseMII	CTCAG	1 cut(s)	443
BseNI	ACTGG	2 cut(s)	420, 645
BseSI	GKGCMC	1 cut(s)	399
BseXI	GCAGC	1 cut(s)	647
Bsh1236I	CGCG	1 cut(s)	528
BshFI	GGCC	2 cut(s)	284, 510
BshNI	GGYRCC	2 cut(s)	200, 313
BsiSI	CCGG	1 cut(s)	119
BslI	CCNNNNNNNGG	1 cut(s)	470
BsmAI	GTCTC	2 cut(s)	19, 613
BsnI	GGCC	2 cut(s)	284, 510
Bsp1286I	GDGCHC	1 cut(s)	399
Bsp143I	GATC	1 cut(s)	643
Bsp19I	CCATGG	1 cut(s)	196
BspACI	CCGC	3 cut(s)	380, 526, 563
BspANI	GGCC	2 cut(s)	284, 510
BspCNI	CTCAG	1 cut(s)	444
BspFNI	CGCG	1 cut(s)	528
BspLI	GGNNCC	3 cut(s)	202, 301, 315
BspPI	GGATC	1 cut(s)	651
BspT107I	GGYRCC	2 cut(s)	200, 313
BsrI	ACTGG	2 cut(s)	420, 645
BssECI	CCNNGG	6 cut(s)	155, 181, 196, 285, 536, 669
BssMI	GATC	1 cut(s)	643
BssT1I	CCWWGG	3 cut(s)	155, 196, 285
Bst2UI	CCWGG	4 cut(s)	183, 205, 567, 671
Bst4CI	ACNGT	5 cut(s)	29, 236, 356, 521, 613
Bst6I	CTCTTC	1 cut(s)	491
BstC8I	GCNNGC	1 cut(s)	108
BstDEI	CTNAG	2 cut(s)	71, 452
BstDSI	CCRYGG	1 cut(s)	196
BstEII	GGTNACC	1 cut(s)	176
BstFNI	CGCG	1 cut(s)	528
BstKTI	GATC	1 cut(s)	646
BstMAI	GTCTC	2 cut(s)	19, 613
BstMBI	GATC	1 cut(s)	643
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BstNI	CCWGG	4 cut(s)	183, 205, 567, 671
BstPI	GGTNACC	1 cut(s)	176
BstSCI	CCNGG	4 cut(s)	181, 203, 565, 669
BstSFI	CTRYAG	1 cut(s)	596
BstSLI	GKGCMC	1 cut(s)	399
BstUI	CGCG	1 cut(s)	528
BstV1I	GCAGC	1 cut(s)	647
BstV2I	GAAGAC	1 cut(s)	55
BsuRI	GGCC	2 cut(s)	284, 510
BtgI	CCRYGG	1 cut(s)	196
BtsIMutI	CAGTG	3 cut(s)	25, 361, 638
Cac8I	GCNNGC	1 cut(s)	108
Cfr13I	GGNCC	2 cut(s)	371, 508
Csp6I	GTAC	4 cut(s)	148, 193, 314, 609
CviAII	CATG	4 cut(s)	197, 346, 476, 580
CviQI	GTAC	4 cut(s)	148, 193, 314, 609
DdeI	CTNAG	2 cut(s)	71, 452
DpnI	GATC	1 cut(s)	645
DpnII	GATC	1 cut(s)	643
DraIII	CACNNNGTG	1 cut(s)	739
Eam1104I	CTCTTC	1 cut(s)	491
EarI	CTCTTC	1 cut(s)	491
EciI	GGCGGA	1 cut(s)	552
Eco130I	CCWWGG	3 cut(s)	155, 196, 285
Eco147I	AGGCCT	1 cut(s)	284
Eco32I	GATATC	1 cut(s)	482
Eco47I	GGWCC	1 cut(s)	371
Eco91I	GGTNACC	1 cut(s)	176
EcoO65I	GGTNACC	1 cut(s)	176
EcoRII	CCWGG	4 cut(s)	181, 203, 565, 669
EcoRV	GATATC	1 cut(s)	482
EcoT14I	CCWWGG	3 cut(s)	155, 196, 285
ErhI	CCWWGG	3 cut(s)	155, 196, 285
FaeI	CATG	4 cut(s)	200, 349, 479, 583
FalI	AAGNNNNNCTT	4 cut(s)	37, 69, 576, 608
FatI	CATG	4 cut(s)	196, 345, 475, 579
Fnu4HI	GCNGC	3 cut(s)	381, 526, 636
Fsp4HI	GCNGC	3 cut(s)	381, 526, 636
FspBI	CTAG	1 cut(s)	702
GluI	GCNGC	3 cut(s)	381, 526, 636
HaeIII	GGCC	2 cut(s)	284, 510
HapII	CCGG	1 cut(s)	119
Hin1II	CATG	4 cut(s)	200, 349, 479, 583
HindIII	AAGCTT	1 cut(s)	108
HinfI	GANTC	2 cut(s)	362, 457
HpaII	CCGG	1 cut(s)	119
Hpy166II	GTNNAC	1 cut(s)	150
Hpy188I	TCNGA	2 cut(s)	453, 627
Hpy188III	TCNNGA	1 cut(s)	515
Hpy8I	GTNNAC	1 cut(s)	150
HpyCH4III	ACNGT	5 cut(s)	29, 236, 356, 521, 613
HpyCH4IV	ACGT	1 cut(s)	403
HpyCH4V	TGCA	3 cut(s)	33, 106, 635
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
HpyF3I	CTNAG	2 cut(s)	71, 452
HpySE526I	ACGT	1 cut(s)	403
Hsp92II	CATG	4 cut(s)	200, 349, 479, 583
KpnI	GGTACC	1 cut(s)	317
Kzo9I	GATC	1 cut(s)	643
Lsp1109I	GCAGC	1 cut(s)	647
LweI	GCATC	1 cut(s)	622
MaeI	CTAG	1 cut(s)	702
MaeII	ACGT	1 cut(s)	403
MaeIII	GTNAC	1 cut(s)	176
MalI	GATC	1 cut(s)	645
MboI	GATC	1 cut(s)	643
MboII	GAAGA	3 cut(s)	60, 508, 584
MhlI	GDGCHC	1 cut(s)	399
MluCI	AATT	3 cut(s)	349, 530, 709
MmeI	TCCRAC	4 cut(s)	113, 148, 271, 349
MnlI	CCTC	9 cut(s)	72, 304, 345, 447, 464, 546, 594, 649, 708
MroXI	GAANNNNTTC	2 cut(s)	79, 298
MseI	TTAA	1 cut(s)	708
MslI	CAYNNNNRTG	1 cut(s)	489
MspI	CCGG	1 cut(s)	119
MspR9I	CCNGG	4 cut(s)	183, 205, 567, 671
MvaI	CCWGG	4 cut(s)	183, 205, 567, 671
MvnI	CGCG	1 cut(s)	528
MwoI	GCNNNNNNNGC	1 cut(s)	17
NcoI	CCATGG	1 cut(s)	196
NdeII	GATC	1 cut(s)	643
NlaIII	CATG	4 cut(s)	200, 349, 479, 583
NlaIV	GGNNCC	3 cut(s)	202, 301, 315
OliI	CACNNNNGTG	1 cut(s)	489
PceI	AGGCCT	1 cut(s)	284
PcsI	WCGNNNNNNNCGW	1 cut(s)	525
PdmI	GAANNNNTTC	2 cut(s)	79, 298
PfeI	GAWTC	2 cut(s)	362, 457
PkrI	GCNGC	3 cut(s)	382, 527, 637
Psp6I	CCWGG	4 cut(s)	181, 203, 565, 669
PspEI	GGTNACC	1 cut(s)	176
PspGI	CCWGG	4 cut(s)	181, 203, 565, 669
PspN4I	GGNNCC	3 cut(s)	202, 301, 315
PspPI	GGNCC	2 cut(s)	371, 508
RsaI	GTAC	4 cut(s)	149, 194, 315, 610
RsaNI	GTAC	4 cut(s)	148, 193, 314, 609
RseI	CAYNNNNRTG	1 cut(s)	489
SaqAI	TTAA	1 cut(s)	708
SatI	GCNGC	3 cut(s)	381, 526, 636
Sau3AI	GATC	1 cut(s)	643
Sau96I	GGNCC	2 cut(s)	371, 508
ScrFI	CCNGG	4 cut(s)	183, 205, 567, 671
SduI	GDGCHC	1 cut(s)	399
SetI	ASST	9 cut(s)	55, 112, 256, 301, 315, 406, 437, 553, 605
SfaNI	GCATC	1 cut(s)	622
SfcI	CTRYAG	1 cut(s)	596
SinI	GGWCC	1 cut(s)	371
SmiMI	CAYNNNNRTG	1 cut(s)	489
SmlI	CTYRAG	1 cut(s)	336
SmoI	CTYRAG	1 cut(s)	336
SpeI	ACTAGT	1 cut(s)	701
Sse9I	AATT	3 cut(s)	349, 530, 709
SseBI	AGGCCT	1 cut(s)	284
SsiI	CCGC	3 cut(s)	380, 526, 563
SspI	AATATT	1 cut(s)	214
SspMI	CTAG	1 cut(s)	702
StuI	AGGCCT	1 cut(s)	284
StyD4I	CCNGG	4 cut(s)	181, 203, 565, 669
StyI	CCWWGG	3 cut(s)	155, 196, 285
TaaI	ACNGT	5 cut(s)	29, 236, 356, 521, 613
TaiI	ACGT	1 cut(s)	406
TasI	AATT	3 cut(s)	349, 530, 709
TatI	WGTACW	2 cut(s)	147, 608
TauI	GCSGC	2 cut(s)	383, 528
TfiI	GAWTC	2 cut(s)	362, 457
Tru1I	TTAA	1 cut(s)	708
Tru9I	TTAA	1 cut(s)	708
TscAI	CASTG	3 cut(s)	32, 361, 645
TseI	GCWGC	1 cut(s)	635
TspDTI	ATGAA	3 cut(s)	278, 362, 596
TspRI	CASTG	3 cut(s)	32, 361, 645
VpaK11BI	GGWCC	1 cut(s)	371
XapI	RAATTY	1 cut(s)	530
XmnI	GAANNNNTTC	2 cut(s)	79, 298
XspI	CTAG	1 cut(s)	702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.