Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003153

Physical Location & Seq

Genomic Coordinates Reverse (-)

37496106 .. 37496860

Gene Structure 755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0216900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGGGGCAAGGGAGGCCAACGTTTCGGAGCACCATTGCAAGGGAAGGTGGTGGCTGATCAGCCCATCTATGAAGACCCACCGACCGATAGGCAAGCGAAGCTGCTATGTGAGCTGCGTTGTTCGCTTCACGGGGAACCCAGTCCCAACTGATATCATCAAAGAAGGTACTTCTCCTCCTGATTTCTTTGATTATTGGAAATATTCTCTAATTTTTGCAATTGACTGTAATAAGAGAGGCCGTATGGCTCCGAATAACTACACCCAATCCACCAACAAATTTCTCATCGGGTTGGTGAGAGTTGATTTGGGTTCTTTACTATTATTTTACCATCGGGTAAAGCTTGTGGGCGCCGTCCTCTTCGTCTTCTTGGTCGTGATCGCTGCGGCGGTGCCGTTAATCGACGCGCAGACGTGTCTGCCTGAGAGCCTCTTCCCAAGCGTCTTGATTGAGCTCAAGAACTGGTACGCGCGTGAGTACGACGACTATCTCATGACCCAGAAGCCTCATTTCATCATTGGGATCGTCTGTGGCTTGAGCTACTGTTTCAGTGGCCTCTTGCTCTTGTCAACCTGTACGGAATTTTGGCCTCCAATCTTGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004045 GO:0016787 GO:0016788 GO:0052689 GO:0140098 GO:0140101

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pept_tRNA_hydro

Protein Analysis

201

Amino Acids

22.83

Weight (kDa)

8.77

Isoelectric Point (pI)

44.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003153)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16140 AT5G16140
fragaria_vesca	FvH4_5g29670 FvH4_5g29670 FvH4_5g29670 FvH4_5g29670
malus_domestica	MD17G1245600.v1.1
prunus_persica	Prupe.3G143700_v2.0.a1 Prupe.3G143700_v2.0.a1 Prupe.3G143700_v2.0.a1 Prupe.3G143700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0119421 RchiOBHm_Chr3g0480441 RchiOBHm_Chr5g0050971 RchiOBHm_Chr7g0222961
rosa_laevigata	RLG00000002007
rosa_multiflora	Rmu_sc0006514.1_g000012
rosa_roxburghii	Rroxscaffold_3G00236370
rosa_rugosa	Rorug01G0154500.1 Rorug02G0410900 Rorug04G0216900 Rorug04G0217000 Rorug05G0540000 Rorug06G0089000 Rorug06G0151900 Rorug07G0212500 Rorug07G0212500
rosa_samantha	Rh2CG270800 Rh4BG080600 Rh4BG193100 Rh5BG133000 Rh5BG347100 Rh7AG357600 Rh7BG345800 Rh7CG375700 Rh7DG352400
rosa_wichuraiana	Rw7G030410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	350, 391
AccII	CGCG	3 cut(s)	407, 470, 472
AciI	CCGC	2 cut(s)	386, 389
AclI	AACGTT	1 cut(s)	21
AclWI	GGATC	1 cut(s)	530
AcsI	RAATTY	2 cut(s)	278, 581
AcyI	GRCGYC	1 cut(s)	351
AfaI	GTAC	4 cut(s)	169, 467, 479, 577
AfiI	CCNNNNNNNGG	1 cut(s)	40
AflIII	ACRYGT	1 cut(s)	413
AjiI	CACGTC	1 cut(s)	414
AluBI	AGCT	5 cut(s)	102, 114, 343, 454, 540
AluI	AGCT	5 cut(s)	102, 114, 343, 454, 540
Alw21I	GWGCWC	2 cut(s)	33, 456
AlwI	GGATC	1 cut(s)	530
AoxI	GGCC	4 cut(s)	15, 238, 553, 587
ApeKI	GCWGC	3 cut(s)	102, 114, 383
ApoI	RAATTY	2 cut(s)	278, 581
AspLEI	GCGC	3 cut(s)	353, 409, 472
AsuHPI	GGTGA	1 cut(s)	307
BaeI	ACNNNNGTAYC	2 cut(s)	457, 490
BanI	GGYRCC	2 cut(s)	350, 391
BanII	GRGCYC	1 cut(s)	456
BbsI	GAAGAC	2 cut(s)	80, 358
Bbv12I	GWGCWC	2 cut(s)	33, 456
BbvI	GCAGC	3 cut(s)	89, 101, 370
BccI	CCATC	2 cut(s)	73, 339
BceAI	ACGGC	3 cut(s)	225, 338, 379
BclI	TGATCA	1 cut(s)	57
BfoI	RGCGCY	1 cut(s)	354
BisI	GCNGC	4 cut(s)	103, 115, 384, 387
BlsI	GCNGC	4 cut(s)	104, 116, 385, 388
BmgBI	CACGTC	1 cut(s)	414
BmiI	GGNNCC	4 cut(s)	137, 249, 352, 393
BmrI	ACTGGG	1 cut(s)	134
BmuI	ACTGGG	1 cut(s)	134
BpiI	GAAGAC	2 cut(s)	80, 358
BpuEI	CTTGAG	2 cut(s)	440, 556
BsaHI	GRCGYC	1 cut(s)	351
BsaXI	ACNNNNNCTCC	2 cut(s)	160, 190
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse1I	ACTGG	2 cut(s)	140, 467
Bse3DI	GCAATG	1 cut(s)	34
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMI	GCAATG	1 cut(s)	34
BseMII	CTCAG	1 cut(s)	414
BseNI	ACTGG	2 cut(s)	140, 467
BseRI	GAGGAG	1 cut(s)	165
BseXI	GCAGC	3 cut(s)	89, 101, 370
Bsh1236I	CGCG	3 cut(s)	407, 470, 472
Bsh1285I	CGRYCG	1 cut(s)	86
BshFI	GGCC	4 cut(s)	17, 240, 555, 589
BshNI	GGYRCC	2 cut(s)	350, 391
BsiEI	CGRYCG	1 cut(s)	86
BsiHKAI	GWGCWC	2 cut(s)	33, 456
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmFI	GGGAC	1 cut(s)	128
BsnI	GGCC	4 cut(s)	17, 240, 555, 589
Bsp1286I	GDGCHC	2 cut(s)	33, 456
Bsp143I	GATC	3 cut(s)	57, 378, 522
BspACI	CCGC	2 cut(s)	386, 389
BspANI	GGCC	4 cut(s)	17, 240, 555, 589
BspCNI	CTCAG	1 cut(s)	415
BspFNI	CGCG	3 cut(s)	407, 470, 472
BspHI	TCATGA	1 cut(s)	492
BspLI	GGNNCC	4 cut(s)	137, 249, 352, 393
BspPI	GGATC	1 cut(s)	530
BspT107I	GGYRCC	2 cut(s)	350, 391
BsrDI	GCAATG	1 cut(s)	34
BsrI	ACTGG	2 cut(s)	140, 467
BssMI	GATC	3 cut(s)	57, 378, 522
BssNI	GRCGYC	1 cut(s)	351
Bst4CI	ACNGT	2 cut(s)	227, 545
Bst6I	CTCTTC	2 cut(s)	365, 437
BstACI	GRCGYC	1 cut(s)	351
BstC8I	GCNNGC	1 cut(s)	95
BstDEI	CTNAG	1 cut(s)	423
BstFNI	CGCG	3 cut(s)	407, 470, 472
BstH2I	RGCGCY	1 cut(s)	354
BstHHI	GCGC	3 cut(s)	353, 409, 472
BstKTI	GATC	3 cut(s)	60, 381, 525
BstMBI	GATC	3 cut(s)	57, 378, 522
BstMCI	CGRYCG	1 cut(s)	86
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 99, 111, 123
BstUI	CGCG	3 cut(s)	407, 470, 472
BstV1I	GCAGC	3 cut(s)	89, 101, 370
BstV2I	GAAGAC	2 cut(s)	80, 358
BsuRI	GGCC	4 cut(s)	17, 240, 555, 589
BtrI	CACGTC	1 cut(s)	414
BtsIMutI	CAGTG	1 cut(s)	556
Cac8I	GCNNGC	1 cut(s)	95
CciI	TCATGA	1 cut(s)	492
CfoI	GCGC	3 cut(s)	353, 409, 472
CseI	GACGC	2 cut(s)	413, 430
Csp6I	GTAC	4 cut(s)	168, 466, 478, 576
CviAII	CATG	1 cut(s)	493
CviQI	GTAC	4 cut(s)	168, 466, 478, 576
DdeI	CTNAG	1 cut(s)	423
DinI	GGCGCC	1 cut(s)	352
DpnI	GATC	3 cut(s)	59, 380, 524
DpnII	GATC	3 cut(s)	57, 378, 522
Eam1104I	CTCTTC	2 cut(s)	365, 437
EarI	CTCTTC	2 cut(s)	365, 437
Ecl136II	GAGCTC	1 cut(s)	454
Eco24I	GRGCYC	1 cut(s)	456
Eco32I	GATATC	1 cut(s)	154
Eco53kI	GAGCTC	1 cut(s)	454
EcoICRI	GAGCTC	1 cut(s)	454
EcoRV	GATATC	1 cut(s)	154
EcoT38I	GRGCYC	1 cut(s)	456
EgeI	GGCGCC	1 cut(s)	352
EheI	GGCGCC	1 cut(s)	352
FaeI	CATG	1 cut(s)	496
FaiI	YATR	4 cut(s)	71, 108, 245, 494
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	1 cut(s)	492
FbaI	TGATCA	1 cut(s)	57
Fnu4HI	GCNGC	4 cut(s)	103, 115, 384, 387
FriOI	GRGCYC	1 cut(s)	456
Fsp4HI	GCNGC	4 cut(s)	103, 115, 384, 387
GlaI	GCGC	3 cut(s)	352, 408, 471
GluI	GCNGC	4 cut(s)	103, 115, 384, 387
HaeII	RGCGCY	1 cut(s)	354
HaeIII	GGCC	4 cut(s)	17, 240, 555, 589
HgaI	GACGC	2 cut(s)	413, 430
HhaI	GCGC	3 cut(s)	353, 409, 472
Hin1I	GRCGYC	1 cut(s)	351
Hin1II	CATG	1 cut(s)	496
Hin6I	GCGC	3 cut(s)	351, 407, 470
HinP1I	GCGC	3 cut(s)	351, 407, 470
HincII	GTYRAC	1 cut(s)	570
HindII	GTYRAC	1 cut(s)	570
HindIII	AAGCTT	1 cut(s)	341
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	1 cut(s)	570
Hpy188I	TCNGA	2 cut(s)	28, 252
Hpy188III	TCNNGA	5 cut(s)	179, 376, 445, 457, 493
Hpy8I	GTNNAC	1 cut(s)	570
Hpy99I	CGWCG	2 cut(s)	407, 485
HpyAV	CCTTC	2 cut(s)	39, 158
HpyCH4III	ACNGT	2 cut(s)	227, 545
HpyCH4IV	ACGT	2 cut(s)	21, 413
HpyCH4V	TGCA	2 cut(s)	39, 218
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 99, 111, 123
HpyF3I	CTNAG	1 cut(s)	423
HpySE526I	ACGT	2 cut(s)	21, 413
Hsp92I	GRCGYC	1 cut(s)	351
Hsp92II	CATG	1 cut(s)	496
HspAI	GCGC	3 cut(s)	351, 407, 470
KasI	GGCGCC	1 cut(s)	350
Ksp22I	TGATCA	1 cut(s)	57
Kzo9I	GATC	3 cut(s)	57, 378, 522
LmnI	GCTCC	2 cut(s)	28, 253
LpnPI	CCDG	6 cut(s)	153, 192, 435, 448, 512, 586
Lsp1109I	GCAGC	3 cut(s)	89, 101, 370
MaeII	ACGT	2 cut(s)	21, 413
MalI	GATC	3 cut(s)	59, 380, 524
MboI	GATC	3 cut(s)	57, 378, 522
MboII	GAAGA	4 cut(s)	85, 352, 358, 424
MfeI	CAATTG	1 cut(s)	219
MhlI	GDGCHC	2 cut(s)	33, 456
MluCI	AATT	4 cut(s)	210, 219, 278, 581
Mly113I	GGCGCC	1 cut(s)	351
MnlI	CCTC	8 cut(s)	7, 186, 230, 368, 440, 516, 566, 600
MseI	TTAA	2 cut(s)	398, 604
MunI	CAATTG	1 cut(s)	219
MvnI	CGCG	3 cut(s)	407, 470, 472
MwoI	GCNNNNNNNGC	4 cut(s)	14, 99, 111, 123
NarI	GGCGCC	1 cut(s)	351
NdeII	GATC	3 cut(s)	57, 378, 522
NlaIII	CATG	1 cut(s)	496
NlaIV	GGNNCC	4 cut(s)	137, 249, 352, 393
PagI	TCATGA	1 cut(s)	492
PkrI	GCNGC	4 cut(s)	104, 116, 385, 388
PluTI	GGCGCC	1 cut(s)	354
Psp124BI	GAGCTC	1 cut(s)	456
Psp1406I	AACGTT	1 cut(s)	21
PspN4I	GGNNCC	4 cut(s)	137, 249, 352, 393
RsaI	GTAC	4 cut(s)	169, 467, 479, 577
RsaNI	GTAC	4 cut(s)	168, 466, 478, 576
SacI	GAGCTC	1 cut(s)	456
SaqAI	TTAA	2 cut(s)	398, 604
SatI	GCNGC	4 cut(s)	103, 115, 384, 387
Sau3AI	GATC	3 cut(s)	57, 378, 522
SduI	GDGCHC	2 cut(s)	33, 456
SfoI	GGCGCC	1 cut(s)	352
SmlI	CTYRAG	2 cut(s)	455, 535
SmoI	CTYRAG	2 cut(s)	455, 535
Sse9I	AATT	4 cut(s)	210, 219, 278, 581
SsiI	CCGC	2 cut(s)	386, 389
SspDI	GGCGCC	1 cut(s)	350
SspI	AATATT	1 cut(s)	203
SstI	GAGCTC	1 cut(s)	456
TaaI	ACNGT	2 cut(s)	227, 545
TaiI	ACGT	2 cut(s)	24, 416
TaqI	TCGA	1 cut(s)	402
TaqII	GACCGA	1 cut(s)	100
TasI	AATT	4 cut(s)	210, 219, 278, 581
TauI	GCSGC	1 cut(s)	389
Tru1I	TTAA	2 cut(s)	398, 604
Tru9I	TTAA	2 cut(s)	398, 604
TscAI	CASTG	1 cut(s)	556
TseI	GCWGC	3 cut(s)	102, 114, 383
TspDTI	ATGAA	2 cut(s)	86, 502
TspGWI	ACGGA	1 cut(s)	593
TspRI	CASTG	1 cut(s)	556
XapI	RAATTY	2 cut(s)	278, 581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.