Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006514.1

Orthogroup ID

OG0003153

Physical Location & Seq

Genomic Coordinates Reverse (-)

50691 .. 54180

Gene Structure 3490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006514.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

atggcagcaatctctctcttttcctctgcgactagtctccccaccctttggagctcgctgtcaccgccattgcctcgaaccgaagaagctctcggtaccctacccggtagaactcgttttctgaacaagtgttcggtttcaacaagtttttcagttcaagcttccttgccggagaataatagcgataggtttaaagtggaatacactccttggatgattgttggattgggtaaccctggaaataagtaccacggaactaggcacaatgttggttttgaaatgatagatagtatttccaaaacgcagggcattgtgttgaatacaattcagtcaaagtcgctggttggaataggttccattggagaggtaccaattttggtggtgaagcctcaagcttacatgaattatagtggggaagcggttggaccacttgcagcatattatcaagtacctctacgtcatatattattggtttatgatgagatgagcctaccaaatggtgtgttaagattgcagccaaaaggaggacatggctatcacaatggtgtgaagagtgtagtgggccatctggatggctgccgtgattttcctcgcttatgtattggtattggaaatccacctggtactatggacatgaaagcctatcttctacaaaaattcagtacagtagaaagacatcagattgatgcagcactgggtcaaggcgttgaggctgtgaagacactggtgctgaatggatttgacccgaatatcactagtttcaatttgaggcaaaaatacaagtatcacaaagtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004045 GO:0016787 GO:0016788 GO:0052689 GO:0140098 GO:0140101

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pept_tRNA_hydro

Protein Analysis

265

Amino Acids

28.94

Weight (kDa)

9.28

Isoelectric Point (pI)

39.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003153)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16140 AT5G16140
fragaria_vesca	FvH4_5g29670 FvH4_5g29670 FvH4_5g29670 FvH4_5g29670
malus_domestica	MD17G1245600.v1.1
prunus_persica	Prupe.3G143700_v2.0.a1 Prupe.3G143700_v2.0.a1 Prupe.3G143700_v2.0.a1 Prupe.3G143700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0119421 RchiOBHm_Chr3g0480441 RchiOBHm_Chr5g0050971 RchiOBHm_Chr7g0222961
rosa_laevigata	RLG00000002007
rosa_multiflora	Rmu_sc0006514.1_g000012
rosa_roxburghii	Rroxscaffold_3G00236370
rosa_rugosa	Rorug01G0154500.1 Rorug02G0410900 Rorug04G0216900 Rorug04G0217000 Rorug05G0540000 Rorug06G0089000 Rorug06G0151900 Rorug07G0212500 Rorug07G0212500
rosa_samantha	Rh2CG270800 Rh4BG080600 Rh4BG193100 Rh5BG133000 Rh5BG347100 Rh7AG357600 Rh7BG345800 Rh7CG375700 Rh7DG352400
rosa_wichuraiana	Rw7G030410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	95, 367
AccB1I	GGYRCC	2 cut(s)	95, 367
AccB7I	CCANNNNNTGG	1 cut(s)	48
AciI	CCGC	2 cut(s)	65, 419
AcsI	RAATTY	1 cut(s)	656
AdeI	CACNNNGTG	1 cut(s)	793
AfaI	GTAC	6 cut(s)	97, 248, 369, 450, 625, 664
AfiI	CCNNNNNNNGG	2 cut(s)	48, 524
AgsI	TTSAA	5 cut(s)	141, 158, 278, 319, 763
AhlI	ACTAGT	2 cut(s)	32, 755
AjnI	CCWGG	2 cut(s)	235, 619
AleI	CACNNNNGTG	1 cut(s)	543
AluBI	AGCT	4 cut(s)	54, 89, 161, 395
AluI	AGCT	4 cut(s)	54, 89, 161, 395
Alw21I	GWGCWC	1 cut(s)	56
Alw26I	GTCTC	1 cut(s)	41
AoxI	GGCC	1 cut(s)	562
ApeKI	GCWGC	5 cut(s)	5, 434, 514, 576, 689
ApoI	RAATTY	1 cut(s)	656
Asp700I	GAANNNNTTC	1 cut(s)	352
Asp718I	GGTACC	2 cut(s)	95, 367
AspS9I	GGNCC	2 cut(s)	425, 562
AsuC2I	CCSGG	1 cut(s)	105
AsuHPI	GGTGA	2 cut(s)	54, 394
AvaII	GGWCC	1 cut(s)	425
BanI	GGYRCC	2 cut(s)	95, 367
BanII	GRGCYC	1 cut(s)	56
BbsI	GAAGAC	1 cut(s)	725
Bbv12I	GWGCWC	1 cut(s)	56
BbvI	GCAGC	5 cut(s)	17, 446, 526, 563, 701
BccI	CCATC	2 cut(s)	566, 573
BceAI	ACGGC	1 cut(s)	564
BciT130I	CCWGG	2 cut(s)	237, 621
BcnI	CCSGG	1 cut(s)	105
BcoDI	GTCTC	1 cut(s)	41
BcuI	ACTAGT	2 cut(s)	32, 755
BfaI	CTAG	3 cut(s)	33, 258, 756
BisI	GCNGC	5 cut(s)	6, 435, 515, 577, 690
BlsI	GCNGC	5 cut(s)	7, 436, 516, 578, 691
Bme1390I	CCNGG	3 cut(s)	105, 237, 621
Bme18I	GGWCC	1 cut(s)	425
BmgT120I	GGNCC	2 cut(s)	425, 562
BmiI	GGNNCC	3 cut(s)	97, 355, 369
BmrFI	CCNGG	3 cut(s)	105, 237, 621
BmrI	ACTGGG	1 cut(s)	704
BmsI	GCATC	1 cut(s)	676
BmuI	ACTGGG	1 cut(s)	704
BpiI	GAAGAC	1 cut(s)	725
BpuEI	CTTGAG	1 cut(s)	375
BpuMI	CCSGG	1 cut(s)	105
BsaJI	CCNNGG	3 cut(s)	209, 235, 250
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 524
Bse1I	ACTGG	2 cut(s)	699, 729
Bse3DI	GCAATG	1 cut(s)	68
BseBI	CCWGG	2 cut(s)	237, 621
BseDI	CCNNGG	3 cut(s)	209, 235, 250
BseGI	GGATG	2 cut(s)	219, 577
BseLI	CCNNNNNNNGG	2 cut(s)	48, 524
BseMI	GCAATG	1 cut(s)	68
BseNI	ACTGG	2 cut(s)	699, 729
BseXI	GCAGC	5 cut(s)	17, 446, 526, 563, 701
BshFI	GGCC	1 cut(s)	564
BshNI	GGYRCC	2 cut(s)	95, 367
BsiHKAI	GWGCWC	1 cut(s)	56
BsiSI	CCGG	2 cut(s)	105, 170
BslI	CCNNNNNNNGG	2 cut(s)	48, 524
BsmAI	GTCTC	1 cut(s)	41
BsnI	GGCC	1 cut(s)	564
Bsp1286I	GDGCHC	1 cut(s)	56
BspACI	CCGC	2 cut(s)	65, 419
BspANI	GGCC	1 cut(s)	564
BspLI	GGNNCC	3 cut(s)	97, 355, 369
BspT107I	GGYRCC	2 cut(s)	95, 367
BsrDI	GCAATG	1 cut(s)	68
BsrI	ACTGG	2 cut(s)	699, 729
BssECI	CCNNGG	3 cut(s)	209, 235, 250
BssT1I	CCWWGG	1 cut(s)	209
Bst2UI	CCWGG	2 cut(s)	237, 621
Bst4CI	ACNGT	1 cut(s)	667
Bst6I	CTCTTC	1 cut(s)	545
BstC8I	GCNNGC	1 cut(s)	56
BstDSI	CCRYGG	1 cut(s)	250
BstEII	GGTNACC	1 cut(s)	230
BstF5I	GGATG	2 cut(s)	219, 577
BstMAI	GTCTC	1 cut(s)	41
BstMWI	GCNNNNNNNGC	1 cut(s)	64
BstNI	CCWGG	2 cut(s)	237, 621
BstPI	GGTNACC	1 cut(s)	230
BstSCI	CCNGG	3 cut(s)	103, 235, 619
BstV1I	GCAGC	5 cut(s)	17, 446, 526, 563, 701
BstV2I	GAAGAC	1 cut(s)	725
BstXI	CCANNNNNNTGG	1 cut(s)	572
BsuRI	GGCC	1 cut(s)	564
BtgI	CCRYGG	1 cut(s)	250
BtsCI	GGATG	2 cut(s)	219, 577
BtsIMutI	CAGTG	2 cut(s)	692, 722
Cac8I	GCNNGC	1 cut(s)	56
Cfr13I	GGNCC	2 cut(s)	425, 562
CsiI	ACCWGGT	1 cut(s)	619
Csp6I	GTAC	6 cut(s)	96, 247, 368, 449, 624, 663
CspCI	CAANNNNNGTGG	2 cut(s)	360, 395
CviAII	CATG	3 cut(s)	400, 530, 634
CviQI	GTAC	6 cut(s)	96, 247, 368, 449, 624, 663
DraI	TTTAAA	1 cut(s)	193
DraIII	CACNNNGTG	1 cut(s)	793
Eam1104I	CTCTTC	1 cut(s)	545
EarI	CTCTTC	1 cut(s)	545
Ecl136II	GAGCTC	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	209
Eco24I	GRGCYC	1 cut(s)	56
Eco47I	GGWCC	1 cut(s)	425
Eco53kI	GAGCTC	1 cut(s)	54
Eco91I	GGTNACC	1 cut(s)	230
EcoICRI	GAGCTC	1 cut(s)	54
EcoO65I	GGTNACC	1 cut(s)	230
EcoRII	CCWGG	2 cut(s)	235, 619
EcoT14I	CCWWGG	1 cut(s)	209
EcoT38I	GRGCYC	1 cut(s)	56
ErhI	CCWWGG	1 cut(s)	209
FaeI	CATG	3 cut(s)	403, 533, 637
FalI	AAGNNNNNCTT	2 cut(s)	630, 662
FatI	CATG	3 cut(s)	399, 529, 633
Fnu4HI	GCNGC	5 cut(s)	6, 435, 515, 577, 690
FokI	GGATG	2 cut(s)	226, 584
FriOI	GRGCYC	1 cut(s)	56
Fsp4HI	GCNGC	5 cut(s)	6, 435, 515, 577, 690
FspBI	CTAG	3 cut(s)	33, 258, 756
GluI	GCNGC	5 cut(s)	6, 435, 515, 577, 690
HaeIII	GGCC	1 cut(s)	564
HapII	CCGG	2 cut(s)	105, 170
Hin1II	CATG	3 cut(s)	403, 533, 637
HindIII	AAGCTT	2 cut(s)	159, 393
HpaII	CCGG	2 cut(s)	105, 170
HphI	GGTGA	2 cut(s)	54, 394
Hpy188I	TCNGA	2 cut(s)	123, 681
Hpy188III	TCNNGA	1 cut(s)	569
HpyCH4III	ACNGT	1 cut(s)	667
HpyCH4IV	ACGT	1 cut(s)	457
HpyCH4V	TGCA	3 cut(s)	434, 514, 689
HpyF10VI	GCNNNNNNNGC	1 cut(s)	64
HpySE526I	ACGT	1 cut(s)	457
Hsp92II	CATG	3 cut(s)	403, 533, 637
KpnI	GGTACC	2 cut(s)	99, 371
LmnI	GCTCC	1 cut(s)	51
Lsp1109I	GCAGC	5 cut(s)	17, 446, 526, 563, 701
LweI	GCATC	1 cut(s)	676
MabI	ACCWGGT	1 cut(s)	619
MaeI	CTAG	3 cut(s)	33, 258, 756
MaeII	ACGT	1 cut(s)	457
MaeIII	GTNAC	2 cut(s)	60, 230
MboII	GAAGA	4 cut(s)	95, 562, 638, 730
MhlI	GDGCHC	1 cut(s)	56
MluCI	AATT	5 cut(s)	324, 372, 403, 656, 763
MmeI	TCCRAC	3 cut(s)	202, 325, 403
MnlI	CCTC	9 cut(s)	34, 84, 358, 399, 462, 518, 600, 703, 762
MroXI	GAANNNNTTC	1 cut(s)	352
MseI	TTAA	2 cut(s)	192, 506
MslI	CAYNNNNRTG	2 cut(s)	543, 570
MspI	CCGG	2 cut(s)	105, 170
MspR9I	CCNGG	3 cut(s)	105, 237, 621
MvaI	CCWGG	2 cut(s)	237, 621
MwoI	GCNNNNNNNGC	1 cut(s)	64
NciI	CCSGG	1 cut(s)	105
NlaIII	CATG	3 cut(s)	403, 533, 637
NlaIV	GGNNCC	3 cut(s)	97, 355, 369
NmuCI	GTSAC	1 cut(s)	60
OliI	CACNNNNGTG	1 cut(s)	543
PdmI	GAANNNNTTC	1 cut(s)	352
PflMI	CCANNNNNTGG	1 cut(s)	48
PkrI	GCNGC	5 cut(s)	7, 436, 516, 578, 691
Psp124BI	GAGCTC	1 cut(s)	56
Psp6I	CCWGG	2 cut(s)	235, 619
PspEI	GGTNACC	1 cut(s)	230
PspGI	CCWGG	2 cut(s)	235, 619
PspN4I	GGNNCC	3 cut(s)	97, 355, 369
PspPI	GGNCC	2 cut(s)	425, 562
RsaI	GTAC	6 cut(s)	97, 248, 369, 450, 625, 664
RsaNI	GTAC	6 cut(s)	96, 247, 368, 449, 624, 663
RseI	CAYNNNNRTG	2 cut(s)	543, 570
SacI	GAGCTC	1 cut(s)	56
SaqAI	TTAA	2 cut(s)	192, 506
SatI	GCNGC	5 cut(s)	6, 435, 515, 577, 690
Sau96I	GGNCC	2 cut(s)	425, 562
ScrFI	CCNGG	3 cut(s)	105, 237, 621
SduI	GDGCHC	1 cut(s)	56
SexAI	ACCWGGT	1 cut(s)	619
SfaNI	GCATC	1 cut(s)	676
SinI	GGWCC	1 cut(s)	425
SmiMI	CAYNNNNRTG	2 cut(s)	543, 570
SmlI	CTYRAG	1 cut(s)	390
SmoI	CTYRAG	1 cut(s)	390
SpeI	ACTAGT	2 cut(s)	32, 755
Sse9I	AATT	5 cut(s)	324, 372, 403, 656, 763
SsiI	CCGC	2 cut(s)	65, 419
SspMI	CTAG	3 cut(s)	33, 258, 756
SstI	GAGCTC	1 cut(s)	56
StyD4I	CCNGG	3 cut(s)	103, 235, 619
StyI	CCWWGG	1 cut(s)	209
TaaI	ACNGT	1 cut(s)	667
TaiI	ACGT	1 cut(s)	460
TaqI	TCGA	1 cut(s)	76
TasI	AATT	5 cut(s)	324, 372, 403, 656, 763
TatI	WGTACW	1 cut(s)	662
Tru1I	TTAA	2 cut(s)	192, 506
Tru9I	TTAA	2 cut(s)	192, 506
TscAI	CASTG	2 cut(s)	699, 729
TseFI	GTSAC	1 cut(s)	60
TseI	GCWGC	5 cut(s)	5, 434, 514, 576, 689
Tsp45I	GTSAC	1 cut(s)	60
TspDTI	ATGAA	2 cut(s)	416, 650
TspGWI	ACGGA	1 cut(s)	267
TspRI	CASTG	2 cut(s)	699, 729
Van91I	CCANNNNNTGG	1 cut(s)	48
VpaK11BI	GGWCC	1 cut(s)	425
XapI	RAATTY	1 cut(s)	656
XmnI	GAANNNNTTC	1 cut(s)	352
XspI	CTAG	3 cut(s)	33, 258, 756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.