Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003100

Physical Location & Seq

Genomic Coordinates Forward (+)

2989998 .. 2993696

Gene Structure 3699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G039800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGCAGATGACAATCAGAATGAGGTGAAGGACGAGGTGGTACCAGATATTGCCCCTTTTGATCCTACTAAAAAGAAGAAAAAGAAGAAGGTTGTAATTCAGGATATTAATGATGATTCTGTGGACAAGCTGGCTGAGAAAACGGAAAACCTGGCAGTTTCTGATGGGCAGGAGAGTACATTTTCTGGTTTGAAAAAGAAGAAGAAGAAGCCAGTTGAAACCAGTATCTTGAATGAAGACAGTGGCGATGCAGTGGAAGATTTAAATGAGCGCGCTGGCGAGGATGAGGAAGGTGAAGGAATTGTTCTTGAGGCTCCATCCTATCCTTGGGAGGGGAGTGATCGTGATTACACATATGAGGAGCTTCTTGATAGGGTGTTTAACATTCTGCGTGAGAATAACCCGGAGCTGGCTGGAGACAGGCGTAGGACAGTTATGAGGCCTCCACAAGTACTTCGTGAGGGCACAAAGAAAACTGTTTTTGTGAATTTCATGGATCTGTGCAAGACGATGCATAGGCAGCCAGATCACGTCATGGCTTTCTTGCTGGCTGAACTGGGGACAAGTGGATCCCTTGATGGACAACAGAGGTTGGTCGTCAAGGGAAGATTTGCACCGAAGAATTTTGAAGGAATACTGCGGCGATATGTCAATGAATATGTCATTTGCCTTGGGTGCAAAAGTCCAGACACTATACTTTCAAAGGAGAATCGTCTCTTCTTTCTCAGATGCGAGAAGTGTGGTTCTGGACGAACAGTTGCTCCAATTAAAGCTGGTTTTGTGGCTCGCGTTGGACGAAGGAACGCTGGGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

eIF-5_eIF-2B

Protein Analysis

272

Amino Acids

30.48

Weight (kDa)

5.95

Isoelectric Point (pI)

41.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07920
malus_domestica	MD03G1050000.v1.1 MD11G1052200.v1.1
prunus_persica	Prupe.6G039800_v2.0.a1
pyrus_communis	pycom03g03960 pycom11g04260
rosa_chinensis	RchiOBHm_Chr1g0379851 RchiOBHm_Chr1g0379891
rosa_laevigata	RLG00000026352 RLG00000026354
rosa_multiflora	Rmu_co8429969.1_g000001 Rmu_sc0004184.1_g000024 Rmu_sc0004184.1_g000025 Rmu_sc0004184.1_g000026 Rmu_sc0014259.1_g000013
rosa_roxburghii	Rroxscaffold_4G00279870 Rroxscaffold_4G00279880
rosa_rugosa	Rorug01G0415400 Rorug01G0415500 Rorug01G0415600
rosa_samantha	Rh1AG439500 Rh1AG439600 Rh1AG439700 Rh1BG395500 Rh1BG395600 Rh1BG395700 Rh1BG395800 Rh1CG408700 Rh1CG408800 Rh1CG408900 Rh1CG409400 Rh1DG426400 Rh1DG426500 Rh1DG426600 Rh1DG426700
rosa_wichuraiana	Rw1G038260 Rw1G038270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	40
AccB1I	GGYRCC	1 cut(s)	40
AccII	CGCG	2 cut(s)	273, 789
AciI	CCGC	1 cut(s)	640
AclWI	GGATC	4 cut(s)	56, 504, 564, 577
AcsI	RAATTY	2 cut(s)	487, 622
AfaI	GTAC	3 cut(s)	42, 178, 453
AfiI	CCNNNNNNNGG	3 cut(s)	327, 332, 409
AgsI	TTSAA	5 cut(s)	193, 218, 232, 629, 702
AjiI	CACGTC	1 cut(s)	532
AjnI	CCWGG	1 cut(s)	150
AloI	GAACNNNNNNTCC	2 cut(s)	745, 777
AluBI	AGCT	4 cut(s)	130, 364, 409, 773
AluI	AGCT	4 cut(s)	130, 364, 409, 773
Alw26I	GTCTC	2 cut(s)	411, 719
AlwI	GGATC	4 cut(s)	56, 504, 564, 577
AlwNI	CAGNNNCTG	1 cut(s)	161
AoxI	GGCC	1 cut(s)	440
ApeKI	GCWGC	1 cut(s)	520
ApoI	RAATTY	2 cut(s)	487, 622
AseI	ATTAAT	1 cut(s)	108
Asp718I	GGTACC	1 cut(s)	40
AspLEI	GCGC	2 cut(s)	273, 275
AsuC2I	CCSGG	1 cut(s)	404
AsuHPI	GGTGA	2 cut(s)	37, 305
BaeGI	GKGCMC	1 cut(s)	467
BamHI	GGATCC	1 cut(s)	569
BanI	GGYRCC	1 cut(s)	40
BbsI	GAAGAC	1 cut(s)	243
BbvI	GCAGC	1 cut(s)	532
BccI	CCATC	3 cut(s)	158, 325, 572
BciT130I	CCWGG	1 cut(s)	152
BcnI	CCSGG	1 cut(s)	404
BcoDI	GTCTC	2 cut(s)	411, 719
BisI	GCNGC	2 cut(s)	521, 641
BlsI	GCNGC	2 cut(s)	522, 642
BmcAI	AGTACT	1 cut(s)	453
Bme1390I	CCNGG	2 cut(s)	152, 404
BmgBI	CACGTC	1 cut(s)	532
BmiI	GGNNCC	3 cut(s)	42, 315, 571
BmrFI	CCNGG	2 cut(s)	152, 404
BmrI	ACTGGG	1 cut(s)	566
BmsI	GCATC	3 cut(s)	238, 501, 719
BmuI	ACTGGG	1 cut(s)	566
BpiI	GAAGAC	1 cut(s)	243
BpmI	CTGGAG	1 cut(s)	435
BpuEI	CTTGAG	1 cut(s)	329
BpuMI	CCSGG	1 cut(s)	404
BsaBI	GATNNNNATC	1 cut(s)	12
BsaJI	CCNNGG	2 cut(s)	326, 670
BsaXI	ACNNNNNCTCC	4 cut(s)	328, 358, 745, 775
Bsc4I	CCNNNNNNNGG	3 cut(s)	327, 332, 409
Bse1I	ACTGG	3 cut(s)	212, 222, 561
Bse8I	GATNNNNATC	1 cut(s)	12
BseBI	CCWGG	1 cut(s)	152
BseDI	CCNNGG	2 cut(s)	326, 670
BseGI	GGATG	2 cut(s)	289, 317
BseJI	GATNNNNATC	1 cut(s)	12
BseLI	CCNNNNNNNGG	3 cut(s)	327, 332, 409
BseMII	CTCAG	2 cut(s)	126, 739
BseNI	ACTGG	3 cut(s)	212, 222, 561
BsePI	GCGCGC	1 cut(s)	271
BseRI	GAGGAG	1 cut(s)	374
BseSI	GKGCMC	1 cut(s)	467
BseXI	GCAGC	1 cut(s)	532
BseYI	CCCAGC	1 cut(s)	806
Bsh1236I	CGCG	2 cut(s)	273, 789
BshFI	GGCC	1 cut(s)	442
BshNI	GGYRCC	1 cut(s)	40
BsiSI	CCGG	1 cut(s)	404
BslFI	GGGAC	1 cut(s)	574
BslI	CCNNNNNNNGG	3 cut(s)	327, 332, 409
BsmAI	GTCTC	2 cut(s)	411, 719
BsmBI	CGTCTC	1 cut(s)	719
BsmFI	GGGAC	1 cut(s)	574
BsnI	GGCC	1 cut(s)	442
Bsp1286I	GDGCHC	1 cut(s)	467
Bsp143I	GATC	5 cut(s)	61, 340, 496, 526, 569
BspACI	CCGC	1 cut(s)	640
BspANI	GGCC	1 cut(s)	442
BspCNI	CTCAG	2 cut(s)	127, 738
BspFNI	CGCG	2 cut(s)	273, 789
BspLI	GGNNCC	3 cut(s)	42, 315, 571
BspPI	GGATC	4 cut(s)	56, 504, 564, 577
BspT107I	GGYRCC	1 cut(s)	40
BsrI	ACTGG	3 cut(s)	212, 222, 561
BssECI	CCNNGG	2 cut(s)	326, 670
BssHII	GCGCGC	1 cut(s)	271
BssMI	GATC	5 cut(s)	61, 340, 496, 526, 569
BssT1I	CCWWGG	2 cut(s)	326, 670
Bst2UI	CCWGG	1 cut(s)	152
Bst4CI	ACNGT	4 cut(s)	242, 433, 478, 757
Bst6I	CTCTTC	1 cut(s)	722
BstC8I	GCNNGC	6 cut(s)	132, 273, 277, 411, 549, 787
BstDEI	CTNAG	2 cut(s)	135, 725
BstF5I	GGATG	2 cut(s)	289, 317
BstFNI	CGCG	2 cut(s)	273, 789
BstHHI	GCGC	2 cut(s)	273, 275
BstKTI	GATC	5 cut(s)	64, 343, 499, 529, 572
BstMAI	GTCTC	2 cut(s)	411, 719
BstMBI	GATC	5 cut(s)	61, 340, 496, 526, 569
BstMWI	GCNNNNNNNGC	2 cut(s)	520, 675
BstNI	CCWGG	1 cut(s)	152
BstSCI	CCNGG	2 cut(s)	150, 402
BstSLI	GKGCMC	1 cut(s)	467
BstUI	CGCG	2 cut(s)	273, 789
BstV1I	GCAGC	1 cut(s)	532
BstV2I	GAAGAC	1 cut(s)	243
BstX2I	RGATCY	2 cut(s)	496, 569
BstYI	RGATCY	2 cut(s)	496, 569
BsuRI	GGCC	1 cut(s)	442
BtgZI	GCGATG	1 cut(s)	261
BtrI	CACGTC	1 cut(s)	532
BtsCI	GGATG	2 cut(s)	289, 317
BtsI	GCAGTG	1 cut(s)	258
BtsIMutI	CAGTG	2 cut(s)	247, 258
Cac8I	GCNNGC	6 cut(s)	132, 273, 277, 411, 549, 787
CaiI	CAGNNNCTG	1 cut(s)	161
CfoI	GCGC	2 cut(s)	273, 275
Csp6I	GTAC	3 cut(s)	41, 177, 452
CviAII	CATG	3 cut(s)	493, 535, 813
CviQI	GTAC	3 cut(s)	41, 177, 452
DdeI	CTNAG	2 cut(s)	135, 725
DpnI	GATC	5 cut(s)	63, 342, 498, 528, 571
DpnII	GATC	5 cut(s)	61, 340, 496, 526, 569
DraI	TTTAAA	1 cut(s)	264
Eam1104I	CTCTTC	1 cut(s)	722
EarI	CTCTTC	1 cut(s)	722
Eco130I	CCWWGG	2 cut(s)	326, 670
Eco147I	AGGCCT	1 cut(s)	442
EcoRII	CCWGG	1 cut(s)	150
EcoT14I	CCWWGG	2 cut(s)	326, 670
EcoT22I	ATGCAT	1 cut(s)	516
ErhI	CCWWGG	2 cut(s)	326, 670
Esp3I	CGTCTC	1 cut(s)	719
FaeI	CATG	3 cut(s)	496, 538, 816
FaqI	GGGAC	1 cut(s)	574
FatI	CATG	3 cut(s)	492, 534, 812
FauNDI	CATATG	1 cut(s)	355
Fnu4HI	GCNGC	2 cut(s)	521, 641
FokI	GGATG	2 cut(s)	296, 304
Fsp4HI	GCNGC	2 cut(s)	521, 641
GlaI	GCGC	2 cut(s)	272, 274
GluI	GCNGC	2 cut(s)	521, 641
GsaI	CCCAGC	1 cut(s)	810
GsuI	CTGGAG	1 cut(s)	435
HaeIII	GGCC	1 cut(s)	442
HapII	CCGG	1 cut(s)	404
HhaI	GCGC	2 cut(s)	273, 275
Hin1II	CATG	3 cut(s)	496, 538, 816
Hin6I	GCGC	2 cut(s)	271, 273
HinP1I	GCGC	2 cut(s)	271, 273
HinfI	GANTC	2 cut(s)	116, 709
HpaII	CCGG	1 cut(s)	404
HphI	GGTGA	2 cut(s)	37, 305
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188I	TCNGA	3 cut(s)	18, 163, 728
Hpy188III	TCNNGA	8 cut(s)	101, 229, 308, 344, 368, 458, 686, 747
Hpy8I	GTNNAC	1 cut(s)	124
HpyAV	CCTTC	6 cut(s)	22, 82, 284, 290, 623, 792
HpyCH4III	ACNGT	4 cut(s)	242, 433, 478, 757
HpyCH4IV	ACGT	1 cut(s)	531
HpyCH4V	TGCA	5 cut(s)	251, 504, 514, 614, 678
HpyF10VI	GCNNNNNNNGC	2 cut(s)	520, 675
HpyF3I	CTNAG	2 cut(s)	135, 725
HpySE526I	ACGT	1 cut(s)	531
Hsp92II	CATG	3 cut(s)	496, 538, 816
HspAI	GCGC	2 cut(s)	271, 273
KpnI	GGTACC	1 cut(s)	44
Kzo9I	GATC	5 cut(s)	61, 340, 496, 526, 569
LmnI	GCTCC	4 cut(s)	319, 361, 406, 766
Lsp1109I	GCAGC	1 cut(s)	532
LweI	GCATC	3 cut(s)	238, 501, 719
MaeII	ACGT	1 cut(s)	531
MalI	GATC	5 cut(s)	63, 342, 498, 528, 571
MboI	GATC	5 cut(s)	61, 340, 496, 526, 569
MflI	RGATCY	2 cut(s)	496, 569
MhlI	GDGCHC	1 cut(s)	467
MluCI	AATT	5 cut(s)	96, 300, 487, 622, 765
MmeI	TCCRAC	1 cut(s)	772
Mph1103I	ATGCAT	1 cut(s)	516
MseI	TTAA	4 cut(s)	108, 263, 381, 768
MspI	CCGG	1 cut(s)	404
MspR9I	CCNGG	2 cut(s)	152, 404
MvaI	CCWGG	1 cut(s)	152
MvnI	CGCG	2 cut(s)	273, 789
MwoI	GCNNNNNNNGC	2 cut(s)	520, 675
NciI	CCSGG	1 cut(s)	404
NdeI	CATATG	1 cut(s)	355
NdeII	GATC	5 cut(s)	61, 340, 496, 526, 569
NlaIII	CATG	3 cut(s)	496, 538, 816
NlaIV	GGNNCC	3 cut(s)	42, 315, 571
NsiI	ATGCAT	1 cut(s)	516
PauI	GCGCGC	1 cut(s)	271
PceI	AGGCCT	1 cut(s)	442
PcsI	WCGNNNNNNNCGW	1 cut(s)	793
PfeI	GAWTC	2 cut(s)	116, 709
PkrI	GCNGC	2 cut(s)	522, 642
PshBI	ATTAAT	1 cut(s)	108
Psp6I	CCWGG	1 cut(s)	150
PspFI	CCCAGC	1 cut(s)	806
PspGI	CCWGG	1 cut(s)	150
PspN4I	GGNNCC	3 cut(s)	42, 315, 571
PstNI	CAGNNNCTG	1 cut(s)	161
PsuI	RGATCY	2 cut(s)	496, 569
PteI	GCGCGC	1 cut(s)	271
RsaI	GTAC	3 cut(s)	42, 178, 453
RsaNI	GTAC	3 cut(s)	41, 177, 452
SaqAI	TTAA	4 cut(s)	108, 263, 381, 768
SatI	GCNGC	2 cut(s)	521, 641
Sau3AI	GATC	5 cut(s)	61, 340, 496, 526, 569
ScaI	AGTACT	1 cut(s)	453
ScrFI	CCNGG	2 cut(s)	152, 404
SduI	GDGCHC	1 cut(s)	467
SfaNI	GCATC	3 cut(s)	238, 501, 719
SmiI	ATTTAAAT	1 cut(s)	264
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
Sse9I	AATT	5 cut(s)	96, 300, 487, 622, 765
SseBI	AGGCCT	1 cut(s)	442
SsiI	CCGC	1 cut(s)	640
StuI	AGGCCT	1 cut(s)	442
StyD4I	CCNGG	2 cut(s)	150, 402
StyI	CCWWGG	2 cut(s)	326, 670
SwaI	ATTTAAAT	1 cut(s)	264
TaaI	ACNGT	4 cut(s)	242, 433, 478, 757
TaiI	ACGT	1 cut(s)	534
TasI	AATT	5 cut(s)	96, 300, 487, 622, 765
TatI	WGTACW	2 cut(s)	176, 451
TauI	GCSGC	1 cut(s)	643
TfiI	GAWTC	2 cut(s)	116, 709
Tru1I	TTAA	4 cut(s)	108, 263, 381, 768
Tru9I	TTAA	4 cut(s)	108, 263, 381, 768
TscAI	CASTG	2 cut(s)	247, 258
TseI	GCWGC	1 cut(s)	520
TspDTI	ATGAA	3 cut(s)	249, 481, 669
TspGWI	ACGGA	1 cut(s)	158
TspRI	CASTG	2 cut(s)	247, 258
VspI	ATTAAT	1 cut(s)	108
XapI	RAATTY	2 cut(s)	487, 622
XcmI	CCANNNNNNNNNTGG	1 cut(s)	324
ZrmI	AGTACT	1 cut(s)	453
Zsp2I	ATGCAT	1 cut(s)	516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.