Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003100

Physical Location & Seq

Genomic Coordinates Reverse (-)

65755551 .. 65757113

Gene Structure 1563 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60320

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1563 bp

ATGGCTTCATCGTCTGAGGAACCACCACAGCAGCCACAGTCAGTGAAGGACTGTCTTTACAAGACCAAGCTCATTCAATTCTTGGACCGCACTGCCCCTATCGTCCTCCAGAACGACAATGGCCCCTGCCCTCTCCTCGCCATCTGTAATGTTCTCTCCCTGAGAAACAACCTGAACTTGAGTGCAGACACTACAGAAGTCTCTCAAGAAAAGTTACTCACACTCGTTGCTGAAAGATTAATTGATTCTATTGATAATAAAGATGCTGTTGCCGATGCTATCGATCTACTCCCTCGCCTTGCAACCGGAATCAACGTCGACATAAAATTCACAAGGATAAGTGATTTTGAGTCTACTCCAGAACGTGCAATATTTGATCTGCTAGACATCCCACTATATCATGGCTGGATAGTTGATCCCGTGCTAAATGAGACTGCTAATGCAATTGAGTCCAAGTCCTATAATACTCTTATGGGGGAGCTTGTTGCAATGGAAACACAAAGTATGACTGCAACACTTGGTGTACCTTCCCCAAGCCTTTCTAAAACTAGATATCTTGTTGAGTCTCCACATTCAGCTTCTTCTGATGAACCAAAGGTAATTAAAGCAGGAGACCGTGAAGAAGAAGCAGAGTTGTTAATGGCCTTACAAATGTCTATGGGTGAGCTTTCAACTTCAGTGGGTGATCCTGAATGCAGTAATTCTCATCAGTCAGAACTGTCTGTACAACAAGGGGAATTGATCAGGACTTTTTTGAAGAACAATGCTAGTCAATTGACTTACTATGGCCTTTTCTGCTTACAAGATGGCCTTAAAGAGCAGGAGCTCTGTGTTTTCTTTCGAAACAACCACTTCAGTACCATGTTTAAGATCAATGGAGAAGTTTATCTTTTGGCAACTGATCAGGGTTATCTGAATCAGCATGATTTGGTGTGGGAAAAGCTTAATGAGGTGAATGGAGATACATTGTTCATGACTGGCAATTTCAAGGAATTTAAAGTTGATAACCAATCACATGAAAATTGGACCACTGCCGACTACCTTGCCAGCATTGATAGTGCAGCTTCAGCAGGCTTCGATATAAATTCCGATCTGCAATTGGCAATTGCTCTGCAACAACAGGACAACTGTAGCGGAAATTCCACGAAGCTTGACGATGGAGAAAAGAGTGGTCTAGTTCTGACTCCTCCTCAAGTTCTTGAAGGGTCCAAGAAAAAAACTGTTCTTGTCAATTTCATGGAGTACTGTAGGGCTATGGTTAGGGAGCCGGATCATGTAATGAGTTTCATGCTTGCGGAATTGGACACGAGTGGATCGCTTGATGAACAGCTGAGGTTAGTTGTGAAGGGAAGATTTTTGCCTAAGAAGTTCGGAGCAATCTTGCGGAAATATGTCAATCAATATGTGATTTGCTTCGCATGCAGACGTACAGACACTCGACTTTCGAAAGAAAATCGGCCCAAGTACCATCTTATATGCGAGTGGTGTTGTGCTTCGCGATCAGTTGCTCCTATTAAAGCTGGTTTTGTTGCCAAAGTTGGAAACAGGAACAGTGCGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MINDY_DUB

Protein Analysis

520

Amino Acids

57.86

Weight (kDa)

4.98

Isoelectric Point (pI)

34.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MINDY_DUB	PF04424	20 - 329	3.5e-89	MINDY deubiquitinase
eIF-5_eIF-2B	PF01873	393 - 498	1.2e-28	Domain found in IF2B/IF5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07920
malus_domestica	MD03G1050000.v1.1 MD11G1052200.v1.1
prunus_persica	Prupe.6G039800_v2.0.a1
pyrus_communis	pycom03g03960 pycom11g04260
rosa_chinensis	RchiOBHm_Chr1g0379851 RchiOBHm_Chr1g0379891
rosa_laevigata	RLG00000026352 RLG00000026354
rosa_multiflora	Rmu_co8429969.1_g000001 Rmu_sc0004184.1_g000024 Rmu_sc0004184.1_g000025 Rmu_sc0004184.1_g000026 Rmu_sc0014259.1_g000013
rosa_roxburghii	Rroxscaffold_4G00279870 Rroxscaffold_4G00279880
rosa_rugosa	Rorug01G0415400 Rorug01G0415500 Rorug01G0415600
rosa_samantha	Rh1AG439500 Rh1AG439600 Rh1AG439700 Rh1BG395500 Rh1BG395600 Rh1BG395700 Rh1BG395800 Rh1CG408700 Rh1CG408800 Rh1CG408900 Rh1CG409400 Rh1DG426400 Rh1DG426500 Rh1DG426600 Rh1DG426700
rosa_wichuraiana	Rw1G038260 Rw1G038270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	318, 353
AccII	CGCG	1 cut(s)	1498
AciI	CCGC	5 cut(s)	88, 1134, 1295, 1384, 1556
AclWI	GGATC	4 cut(s)	410, 680, 1278, 1321
AcsI	RAATTY	4 cut(s)	326, 992, 1084, 1138
AcuI	CTGAAG	3 cut(s)	660, 838, 1050
AdeI	CACNNNGTG	1 cut(s)	521
AfaI	GTAC	6 cut(s)	525, 726, 859, 1244, 1429, 1466
AgsI	TTSAA	5 cut(s)	77, 672, 757, 988, 1202
Alw21I	GWGCWC	1 cut(s)	828
Alw26I	GTCTC	4 cut(s)	205, 425, 570, 606
AlwI	GGATC	4 cut(s)	410, 680, 1278, 1321
AoxI	GGCC	5 cut(s)	121, 642, 787, 808, 1457
ApeKI	GCWGC	2 cut(s)	31, 1061
ApoI	RAATTY	4 cut(s)	326, 992, 1084, 1138
AseI	ATTAAT	1 cut(s)	239
AspS9I	GGNCC	5 cut(s)	85, 122, 1026, 1206, 1458
AsuHPI	GGTGA	3 cut(s)	674, 695, 964
AsuII	TTCGAA	2 cut(s)	841, 1445
AvaII	GGWCC	3 cut(s)	85, 1026, 1206
BaeI	ACNNNNGTAYC	2 cut(s)	841, 874
BanII	GRGCYC	1 cut(s)	828
BauI	CACGAG	1 cut(s)	1306
Bbv12I	GWGCWC	1 cut(s)	828
BbvCI	CCTCAGC	1 cut(s)	1331
BbvI	GCAGC	2 cut(s)	43, 1073
BccI	CCATC	4 cut(s)	149, 800, 1151, 1476
BcgI	CGANNNNNNTGC	2 cut(s)	1025, 1059
BclI	TGATCA	2 cut(s)	741, 901
BcoDI	GTCTC	4 cut(s)	205, 425, 570, 606
BfaI	CTAG	4 cut(s)	383, 549, 768, 1175
BfmI	CTRYAG	3 cut(s)	192, 1129, 1246
BisI	GCNGC	3 cut(s)	32, 1062, 1557
BlsI	GCNGC	3 cut(s)	33, 1063, 1558
BmcAI	AGTACT	1 cut(s)	1244
Bme18I	GGWCC	3 cut(s)	85, 1026, 1206
BmgT120I	GGNCC	5 cut(s)	85, 122, 1026, 1206, 1458
BmiI	GGNNCC	4 cut(s)	21, 124, 1207, 1266
BmsI	GCATC	2 cut(s)	253, 265
BpmI	CTGGAG	2 cut(s)	92, 342
Bpu10I	CCTNAGC	1 cut(s)	1331
Bpu14I	TTCGAA	2 cut(s)	841, 1445
BpuEI	CTTGAG	3 cut(s)	189, 199, 1176
Bsa29I	ATCGAT	1 cut(s)	282
BsaI	GGTCTC	1 cut(s)	606
BsaWI	WCCGGW	1 cut(s)	305
Bse1I	ACTGG	1 cut(s)	982
Bse3DI	GCAATG	1 cut(s)	495
BseCI	ATCGAT	1 cut(s)	282
BseGI	GGATG	1 cut(s)	387
BseMI	GCAATG	1 cut(s)	495
BseMII	CTCAG	3 cut(s)	6, 152, 1322
BseNI	ACTGG	1 cut(s)	982
BseRI	GAGGAG	3 cut(s)	125, 1176, 1179
BseXI	GCAGC	2 cut(s)	43, 1073
BsgI	GTGCAG	2 cut(s)	204, 1080
Bsh1236I	CGCG	1 cut(s)	1498
BshFI	GGCC	5 cut(s)	123, 644, 789, 810, 1459
BshVI	ATCGAT	1 cut(s)	282
BsiHKAI	GWGCWC	1 cut(s)	828
BsiSI	CCGG	2 cut(s)	306, 1268
BsmAI	GTCTC	4 cut(s)	205, 425, 570, 606
BsmI	GAATGC	1 cut(s)	698
BsnI	GGCC	5 cut(s)	123, 644, 789, 810, 1459
Bso31I	GGTCTC	1 cut(s)	606
Bsp119I	TTCGAA	2 cut(s)	841, 1445
Bsp1286I	GDGCHC	1 cut(s)	828
Bsp1407I	TGTACA	1 cut(s)	724
Bsp68I	TCGCGA	1 cut(s)	1498
BspACI	CCGC	5 cut(s)	88, 1134, 1295, 1384, 1556
BspANI	GGCC	5 cut(s)	123, 644, 789, 810, 1459
BspCNI	CTCAG	3 cut(s)	7, 153, 1323
BspDI	ATCGAT	1 cut(s)	282
BspFNI	CGCG	1 cut(s)	1498
BspHI	TCATGA	1 cut(s)	972
BspLI	GGNNCC	4 cut(s)	21, 124, 1207, 1266
BspPI	GGATC	4 cut(s)	410, 680, 1278, 1321
BspT104I	TTCGAA	2 cut(s)	841, 1445
BspTNI	GGTCTC	1 cut(s)	606
BsrDI	GCAATG	1 cut(s)	495
BsrGI	TGTACA	1 cut(s)	724
BsrI	ACTGG	1 cut(s)	982
BssSI	CACGAG	1 cut(s)	1306
Bst2BI	CACGAG	1 cut(s)	1306
Bst4CI	ACNGT	8 cut(s)	39, 53, 617, 720, 1130, 1222, 1247, 1553
BstAUI	TGTACA	1 cut(s)	724
BstBI	TTCGAA	2 cut(s)	841, 1445
BstC8I	GCNNGC	4 cut(s)	1048, 1072, 1293, 1420
BstDEI	CTNAG	4 cut(s)	15, 161, 1331, 1362
BstF5I	GGATG	1 cut(s)	387
BstFNI	CGCG	1 cut(s)	1498
BstMAI	GTCTC	4 cut(s)	205, 425, 570, 606
BstMWI	GCNNNNNNNGC	3 cut(s)	795, 1067, 1419
BstNSI	RCATGY	1 cut(s)	1422
BstSFI	CTRYAG	3 cut(s)	192, 1129, 1246
BstUI	CGCG	1 cut(s)	1498
BstV1I	GCAGC	2 cut(s)	43, 1073
Bsu15I	ATCGAT	1 cut(s)	282
BsuRI	GGCC	5 cut(s)	123, 644, 789, 810, 1459
BsuTUI	ATCGAT	1 cut(s)	282
BtsCI	GGATG	1 cut(s)	387
BtsI	GCAGTG	2 cut(s)	90, 1029
BtsIMutI	CAGTG	5 cut(s)	48, 90, 684, 1029, 1558
BtuMI	TCGCGA	1 cut(s)	1498
Cac8I	GCNNGC	4 cut(s)	1048, 1072, 1293, 1420
CciI	TCATGA	1 cut(s)	972
Cfr13I	GGNCC	5 cut(s)	85, 122, 1026, 1206, 1458
ClaI	ATCGAT	1 cut(s)	282
Csp6I	GTAC	6 cut(s)	524, 725, 858, 1243, 1428, 1465
CspCI	CAANNNNNGTGG	4 cut(s)	660, 695, 1132, 1167
CviQI	GTAC	6 cut(s)	524, 725, 858, 1243, 1428, 1465
DdeI	CTNAG	4 cut(s)	15, 161, 1331, 1362
DraI	TTTAAA	1 cut(s)	997
DraIII	CACNNNGTG	1 cut(s)	521
Ecl136II	GAGCTC	1 cut(s)	826
Eco24I	GRGCYC	1 cut(s)	828
Eco31I	GGTCTC	1 cut(s)	606
Eco32I	GATATC	1 cut(s)	554
Eco47I	GGWCC	3 cut(s)	85, 1026, 1206
Eco53kI	GAGCTC	1 cut(s)	826
Eco57I	CTGAAG	3 cut(s)	660, 838, 1050
EcoICRI	GAGCTC	1 cut(s)	826
EcoRV	GATATC	1 cut(s)	554
EcoT38I	GRGCYC	1 cut(s)	828
FalI	AAGNNNNNCTT	4 cut(s)	795, 827, 873, 905
FbaI	TGATCA	2 cut(s)	741, 901
FblI	GTMKAC	2 cut(s)	318, 353
Fnu4HI	GCNGC	3 cut(s)	32, 1062, 1557
FokI	GGATG	1 cut(s)	374
FriOI	GRGCYC	1 cut(s)	828
Fsp4HI	GCNGC	3 cut(s)	32, 1062, 1557
FspBI	CTAG	4 cut(s)	383, 549, 768, 1175
GluI	GCNGC	3 cut(s)	32, 1062, 1557
GsuI	CTGGAG	2 cut(s)	92, 342
HaeIII	GGCC	5 cut(s)	123, 644, 789, 810, 1459
HapII	CCGG	2 cut(s)	306, 1268
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HindIII	AAGCTT	2 cut(s)	941, 1148
HinfI	GANTC	7 cut(s)	245, 309, 350, 449, 563, 916, 1183
HpaII	CCGG	2 cut(s)	306, 1268
HphI	GGTGA	3 cut(s)	674, 695, 964
Hpy166II	GTNNAC	3 cut(s)	319, 354, 524
Hpy188I	TCNGA	7 cut(s)	16, 586, 715, 915, 1090, 1182, 1373
Hpy188III	TCNNGA	8 cut(s)	109, 206, 359, 689, 745, 973, 1199, 1497
Hpy8I	GTNNAC	3 cut(s)	319, 354, 524
Hpy99I	CGWCG	1 cut(s)	320
HpyAV	CCTTC	4 cut(s)	40, 537, 1196, 1339
HpyCH4III	ACNGT	8 cut(s)	39, 53, 617, 720, 1130, 1222, 1247, 1553
HpyCH4IV	ACGT	3 cut(s)	315, 364, 1426
HpyF10VI	GCNNNNNNNGC	3 cut(s)	795, 1067, 1419
HpyF3I	CTNAG	4 cut(s)	15, 161, 1331, 1362
HpySE526I	ACGT	3 cut(s)	315, 364, 1426
Ksp22I	TGATCA	2 cut(s)	741, 901
LmnI	GCTCC	5 cut(s)	478, 823, 1264, 1373, 1513
Lsp1109I	GCAGC	2 cut(s)	43, 1073
LweI	GCATC	2 cut(s)	253, 265
MaeI	CTAG	4 cut(s)	383, 549, 768, 1175
MaeII	ACGT	3 cut(s)	315, 364, 1426
MaeIII	GTNAC	1 cut(s)	213
MboII	GAAGA	5 cut(s)	573, 632, 635, 769, 1362
MfeI	CAATTG	4 cut(s)	444, 773, 1097, 1104
MhlI	GDGCHC	1 cut(s)	828
MlyI	GAGTC	4 cut(s)	359, 458, 572, 1177
MmeI	TCCRAC	1 cut(s)	1519
MnlI	CCTC	9 cut(s)	10, 116, 141, 146, 303, 943, 1197, 1200, 1326
MseI	TTAA	8 cut(s)	239, 603, 638, 813, 867, 945, 996, 1515
MspA1I	CMGCKG	1 cut(s)	1330
MspI	CCGG	2 cut(s)	306, 1268
MunI	CAATTG	4 cut(s)	444, 773, 1097, 1104
Mva1269I	GAATGC	1 cut(s)	698
MvnI	CGCG	1 cut(s)	1498
MwoI	GCNNNNNNNGC	3 cut(s)	795, 1067, 1419
NlaIV	GGNNCC	4 cut(s)	21, 124, 1207, 1266
NruI	TCGCGA	1 cut(s)	1498
NspI	RCATGY	1 cut(s)	1422
NspV	TTCGAA	2 cut(s)	841, 1445
PaeI	GCATGC	1 cut(s)	1422
PagI	TCATGA	1 cut(s)	972
PctI	GAATGC	1 cut(s)	698
PfeI	GAWTC	3 cut(s)	245, 309, 916
PkrI	GCNGC	3 cut(s)	33, 1063, 1558
PleI	GAGTC	4 cut(s)	358, 457, 571, 1177
PpsI	GAGTC	4 cut(s)	358, 457, 571, 1177
PshBI	ATTAAT	1 cut(s)	239
Psp124BI	GAGCTC	1 cut(s)	828
PspN4I	GGNNCC	4 cut(s)	21, 124, 1207, 1266
PspPI	GGNCC	5 cut(s)	85, 122, 1026, 1206, 1458
PsrI	GAACNNNNNNTAC	2 cut(s)	708, 740
PvuII	CAGCTG	1 cut(s)	1330
RruI	TCGCGA	1 cut(s)	1498
RsaI	GTAC	6 cut(s)	525, 726, 859, 1244, 1429, 1466
RsaNI	GTAC	6 cut(s)	524, 725, 858, 1243, 1428, 1465
SacI	GAGCTC	1 cut(s)	828
SalI	GTCGAC	1 cut(s)	317
SaqAI	TTAA	8 cut(s)	239, 603, 638, 813, 867, 945, 996, 1515
SatI	GCNGC	3 cut(s)	32, 1062, 1557
Sau96I	GGNCC	5 cut(s)	85, 122, 1026, 1206, 1458
ScaI	AGTACT	1 cut(s)	1244
SchI	GAGTC	4 cut(s)	359, 458, 572, 1177
SduI	GDGCHC	1 cut(s)	828
SfaNI	GCATC	2 cut(s)	253, 265
SfcI	CTRYAG	3 cut(s)	192, 1129, 1246
SfuI	TTCGAA	2 cut(s)	841, 1445
SinI	GGWCC	3 cut(s)	85, 1026, 1206
SmlI	CTYRAG	3 cut(s)	178, 204, 1191
SmoI	CTYRAG	3 cut(s)	178, 204, 1191
SphI	GCATGC	1 cut(s)	1422
SsiI	CCGC	5 cut(s)	88, 1134, 1295, 1384, 1556
SspI	AATATT	1 cut(s)	372
SspMI	CTAG	4 cut(s)	383, 549, 768, 1175
SstI	GAGCTC	1 cut(s)	828
TaaI	ACNGT	8 cut(s)	39, 53, 617, 720, 1130, 1222, 1247, 1553
TaiI	ACGT	3 cut(s)	318, 367, 1429
TaqI	TCGA	6 cut(s)	282, 318, 841, 1077, 1438, 1445
TatI	WGTACW	2 cut(s)	724, 1242
TauI	GCSGC	1 cut(s)	1559
TfiI	GAWTC	3 cut(s)	245, 309, 916
Tru1I	TTAA	8 cut(s)	239, 603, 638, 813, 867, 945, 996, 1515
Tru9I	TTAA	8 cut(s)	239, 603, 638, 813, 867, 945, 996, 1515
TscAI	CASTG	5 cut(s)	48, 97, 684, 1036, 1558
TseI	GCWGC	2 cut(s)	31, 1061
TspDTI	ATGAA	6 cut(s)	603, 961, 1032, 1225, 1276, 1338
TspRI	CASTG	5 cut(s)	48, 97, 684, 1036, 1558
VpaK11BI	GGWCC	3 cut(s)	85, 1026, 1206
VspI	ATTAAT	1 cut(s)	239
XapI	RAATTY	4 cut(s)	326, 992, 1084, 1138
XceI	RCATGY	1 cut(s)	1422
XcmI	CCANNNNNNNNNTGG	1 cut(s)	116
XmiI	GTMKAC	2 cut(s)	318, 353
XspI	CTAG	4 cut(s)	383, 549, 768, 1175
ZrmI	AGTACT	1 cut(s)	1244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.