Rmu_sc0014259.1_g000013

MINDY deubiquitinase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014259.1
Physical Location & Seq
Reverse (-)
55850 .. 58377
2528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014259.1_g000013.1.cds

Sequence Viewer

Length: 2013 bp
atggcttcatcgtctgaggaaccaccacagcagccacagtcagtgaaggactgtctttacaagaccaagctcattcaattcttggaccgcactgcccctatcgtcctccagaacgacaatggcccctgccctctcctcgccatctgtaatgttctctccctgagaaacaacctgaacttgagtgcagacactacagaagtctctcaagaaaagttactcacactcgttgctgaaagattaattgattctattgataataaagatgctgttgccgatgctatcgatctactccctcgccttgcaaccggaatcaacgtcgacataaaattcacaaggataagtgattttgagtctactccagaacgtgcaatatttgatctgctagacatcccactatatcatggctggatagttgatcccgtgctaaatgagactgctaatgcaattgagtccaagtcctataatactcttatgggggagcttgttgcaatggaaacacaaaatatgactgcaacacttggtgtaccttccccaagcctttctaaaactagatctcttgttgagtctccacattcagcttcttctgatgaaccaaaggtaattaaagcaggagaccgtgaagaagaagcagagttgttaatggccttacaaatgtctatgggtgagctttcaacttcagtgggtgatcctgaatgcagtaattctcatcagtcagaactgtctgtacaacaaggggaattgatcaggacttttttgaagaacaatgctagtcaattgacttactacggccttttctgcttacaagatggccttaaagagcaggagctctgtgttttctttcgaaacaaccacttcagtaccatgtttaagatcaatggagaagtttatcttttggcaactgatcagggttacctgaatcagcatgatttggtgtgggaaaagcttaatgaggtgaatggagatacattgttcatgactggcaatttcaaggaatttaaagttgataaccaatcacatgaaaattggaccactgccgactaccttgccagcattgatagtgcagcttcagcaggcttcgatataaattccgatctgcaattggcaattgctctgcaacaacaggacaactgtagcggaaattccacgaagcttgacgatggagaaaagagtggtctagttctgactcctcctcaagttcttgaagggtccaagaaaaaaactgttcttgtcaatttcatggagtactgtagggctatggttagggagccggatcatgtaatgagtttcatgcttgcggaattggactcgagtggatcgcttgatgaacagctgagacgtacagacactcgactttcgaaagaaaatcggcccaagtaccatcttatatgcgagtggtgttgtgcttcgcgatcagttgctcctattaaagctggttttgttgccaaaattggaaacaggaacagagactgctgtttatgctaccgacgaaaatactggcatggagtcgtgattcggtgcaaagtttttattgacaaactttccagaatccagatatttcttagttctgttaaactcgacttagatgggcttgccactcttcaagtccatgcctttgataatgaagaaaatgtgttttcgtcactggtgggattgcaattcatgtggcagctagaaaccaatgaaccactgcatcaccttgttcatgttcctcttaaggactctcccctgagtgactctggtggattgtgtggagacctagatgtccaaataaaacttgaagatagtggtgtattctctgacatgtatgttgtaaaaggaatcgaaattgggcatgagactgtttctgtgcatttgcttgagccacaatacaagcacatggctgataagattgtcctgactgtagcagaagccatgtcacttgatcctccctcacctgtacttgtcctcgttggcgctgctgttcgttataatctgaaagttattcgtgtgaacaaggctcaagtgctaacttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

670

Amino Acids

74.59

Weight (kDa)

4.97

Isoelectric Point (pI)

36.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1968
AasI GACNNNNNNGTC 1 cut(s) 1760
AccI GTMKAC 2 cut(s) 318, 353
AccII CGCG 1 cut(s) 1408
AciI CCGC 3 cut(s) 88, 1134, 1295
AclWI GGATC 5 cut(s) 410, 680, 1278, 1321, 1916
AcsI RAATTY 4 cut(s) 326, 992, 1084, 1138
AcuI CTGAAG 3 cut(s) 660, 838, 1050
AdeI CACNNNGTG 1 cut(s) 521
AfaI GTAC 7 cut(s) 525, 726, 859, 1244, 1339, 1376, 1938
AflII CTTAAG 1 cut(s) 1712
AflIII ACRYGT 1 cut(s) 1800
AgsI TTSAA 7 cut(s) 77, 672, 757, 988, 1202, 1601, 1778
Alw21I GWGCWC 1 cut(s) 828
Alw26I GTCTC 8 cut(s) 205, 425, 570, 606, 1327, 1458, 1746, 1829
AlwI GGATC 5 cut(s) 410, 680, 1278, 1321, 1916
AlwNI CAGNNNCTG 1 cut(s) 1467
Ama87I CYCGRG 1 cut(s) 1306
AoxI GGCC 5 cut(s) 121, 642, 787, 808, 1367
ApeKI GCWGC 4 cut(s) 31, 1061, 1666, 1955
ApoI RAATTY 4 cut(s) 326, 992, 1084, 1138
AseI ATTAAT 1 cut(s) 239
AspLEI GCGC 1 cut(s) 1955
AspS9I GGNCC 5 cut(s) 85, 122, 1026, 1206, 1368
AsuHPI GGTGA 5 cut(s) 674, 695, 964, 1685, 1923
AsuII TTCGAA 2 cut(s) 841, 1355
AvaI CYCGRG 1 cut(s) 1306
AvaII GGWCC 3 cut(s) 85, 1026, 1206
BaeI ACNNNNGTAYC 2 cut(s) 841, 874
BanII GRGCYC 1 cut(s) 828
Bbv12I GWGCWC 1 cut(s) 828
BbvI GCAGC 4 cut(s) 43, 1073, 1678, 1942
BccI CCATC 5 cut(s) 149, 800, 1151, 1386, 1577
BceAI ACGGC 1 cut(s) 802
BcgI CGANNNNNNTGC 2 cut(s) 1025, 1059
BclI TGATCA 2 cut(s) 741, 901
BcoDI GTCTC 8 cut(s) 205, 425, 570, 606, 1327, 1458, 1746, 1829
BfaI CTAG 6 cut(s) 383, 549, 768, 1175, 1670, 1757
BfmI CTRYAG 4 cut(s) 192, 1129, 1246, 1899
BfoI RGCGCY 1 cut(s) 1956
BfrI CTTAAG 1 cut(s) 1712
BglII AGATCT 1 cut(s) 551
BisI GCNGC 4 cut(s) 32, 1062, 1667, 1956
BlsI GCNGC 4 cut(s) 33, 1063, 1668, 1957
BmcAI AGTACT 1 cut(s) 1244
Bme18I GGWCC 3 cut(s) 85, 1026, 1206
BmeT110I CYCGRG 1 cut(s) 1306
BmgT120I GGNCC 5 cut(s) 85, 122, 1026, 1206, 1368
BmiI GGNNCC 4 cut(s) 21, 124, 1207, 1266
BmsI GCATC 3 cut(s) 253, 265, 1699
BpmI CTGGAG 2 cut(s) 92, 342
Bpu14I TTCGAA 2 cut(s) 841, 1355
BpuEI CTTGAG 5 cut(s) 189, 199, 1176, 1877, 1983
Bsa29I ATCGAT 1 cut(s) 282
BsaI GGTCTC 2 cut(s) 606, 1746
BsaWI WCCGGW 1 cut(s) 305
Bse1I ACTGG 3 cut(s) 982, 1499, 1647
Bse3DI GCAATG 1 cut(s) 495
BseCI ATCGAT 1 cut(s) 282
BseGI GGATG 1 cut(s) 387
BseMI GCAATG 1 cut(s) 495
BseMII CTCAG 4 cut(s) 6, 152, 1322, 1718
BseNI ACTGG 3 cut(s) 982, 1499, 1647
BseRI GAGGAG 3 cut(s) 125, 1176, 1179
BseXI GCAGC 4 cut(s) 43, 1073, 1678, 1942
BsgI GTGCAG 2 cut(s) 204, 1080
Bsh1236I CGCG 1 cut(s) 1408
BshFI GGCC 5 cut(s) 123, 644, 789, 810, 1369
BshVI ATCGAT 1 cut(s) 282
BsiHKAI GWGCWC 1 cut(s) 828
BsiHKCI CYCGRG 1 cut(s) 1306
BsiSI CCGG 2 cut(s) 306, 1268
BsmAI GTCTC 8 cut(s) 205, 425, 570, 606, 1327, 1458, 1746, 1829
BsmBI CGTCTC 1 cut(s) 1327
BsmI GAATGC 1 cut(s) 698
BsnI GGCC 5 cut(s) 123, 644, 789, 810, 1369
Bso31I GGTCTC 2 cut(s) 606, 1746
BsoBI CYCGRG 1 cut(s) 1306
Bsp119I TTCGAA 2 cut(s) 841, 1355
Bsp1286I GDGCHC 1 cut(s) 828
Bsp1407I TGTACA 1 cut(s) 724
Bsp68I TCGCGA 1 cut(s) 1408
BspACI CCGC 3 cut(s) 88, 1134, 1295
BspANI GGCC 5 cut(s) 123, 644, 789, 810, 1369
BspCNI CTCAG 4 cut(s) 7, 153, 1323, 1719
BspDI ATCGAT 1 cut(s) 282
BspFNI CGCG 1 cut(s) 1408
BspHI TCATGA 1 cut(s) 972
BspLI GGNNCC 4 cut(s) 21, 124, 1207, 1266
BspPI GGATC 5 cut(s) 410, 680, 1278, 1321, 1916
BspT104I TTCGAA 2 cut(s) 841, 1355
BspTI CTTAAG 1 cut(s) 1712
BspTNI GGTCTC 2 cut(s) 606, 1746
BsrDI GCAATG 1 cut(s) 495
BsrGI TGTACA 1 cut(s) 724
BsrI ACTGG 3 cut(s) 982, 1499, 1647
Bst4CI ACNGT 9 cut(s) 39, 53, 617, 720, 1130, 1222, 1247, 1840, 1900
Bst6I CTCTTC 1 cut(s) 1602
BstAFI CTTAAG 1 cut(s) 1712
BstAUI TGTACA 1 cut(s) 724
BstBI TTCGAA 2 cut(s) 841, 1355
BstC8I GCNNGC 4 cut(s) 1048, 1072, 1293, 1590
BstDEI CTNAG 6 cut(s) 15, 161, 1331, 1559, 1579, 1727
BstEII GGTNACC 1 cut(s) 908
BstF5I GGATG 1 cut(s) 387
BstFNI CGCG 1 cut(s) 1408
BstH2I RGCGCY 1 cut(s) 1956
BstHHI GCGC 1 cut(s) 1955
BstMAI GTCTC 8 cut(s) 205, 425, 570, 606, 1327, 1458, 1746, 1829
BstMWI GCNNNNNNNGC 3 cut(s) 795, 1067, 1476
BstNSI RCATGY 1 cut(s) 1804
BstPI GGTNACC 1 cut(s) 908
BstSFI CTRYAG 4 cut(s) 192, 1129, 1246, 1899
BstUI CGCG 1 cut(s) 1408
BstV1I GCAGC 4 cut(s) 43, 1073, 1678, 1942
BstX2I RGATCY 1 cut(s) 551
BstYI RGATCY 1 cut(s) 551
Bsu15I ATCGAT 1 cut(s) 282
BsuRI GGCC 5 cut(s) 123, 644, 789, 810, 1369
BsuTUI ATCGAT 1 cut(s) 282
BtsCI GGATG 1 cut(s) 387
BtsI GCAGTG 3 cut(s) 90, 1029, 1685
BtsIMutI CAGTG 6 cut(s) 48, 90, 684, 1029, 1640, 1685
BtuMI TCGCGA 1 cut(s) 1408
Cac8I GCNNGC 4 cut(s) 1048, 1072, 1293, 1590
CaiI CAGNNNCTG 1 cut(s) 1467
CciI TCATGA 1 cut(s) 972
CfoI GCGC 1 cut(s) 1955
Cfr13I GGNCC 5 cut(s) 85, 122, 1026, 1206, 1368
ClaI ATCGAT 1 cut(s) 282
Csp6I GTAC 7 cut(s) 524, 725, 858, 1243, 1338, 1375, 1937
CspCI CAANNNNNGTGG 6 cut(s) 660, 695, 1132, 1167, 1643, 1678
CviQI GTAC 7 cut(s) 524, 725, 858, 1243, 1338, 1375, 1937
DdeI CTNAG 6 cut(s) 15, 161, 1331, 1559, 1579, 1727
DraI TTTAAA 1 cut(s) 997
DraIII CACNNNGTG 1 cut(s) 521
DrdI GACNNNNNNGTC 1 cut(s) 1760
DseDI GACNNNNNNGTC 1 cut(s) 1760
Eam1104I CTCTTC 1 cut(s) 1602
EarI CTCTTC 1 cut(s) 1602
Ecl136II GAGCTC 1 cut(s) 826
Eco24I GRGCYC 1 cut(s) 828
Eco31I GGTCTC 2 cut(s) 606, 1746
Eco47I GGWCC 3 cut(s) 85, 1026, 1206
Eco53kI GAGCTC 1 cut(s) 826
Eco57I CTGAAG 3 cut(s) 660, 838, 1050
Eco88I CYCGRG 1 cut(s) 1306
Eco91I GGTNACC 1 cut(s) 908
EcoICRI GAGCTC 1 cut(s) 826
EcoO65I GGTNACC 1 cut(s) 908
EcoT38I GRGCYC 1 cut(s) 828
Esp3I CGTCTC 1 cut(s) 1327
FalI AAGNNNNNCTT 4 cut(s) 795, 827, 873, 905
FbaI TGATCA 2 cut(s) 741, 901
FblI GTMKAC 2 cut(s) 318, 353
Fnu4HI GCNGC 4 cut(s) 32, 1062, 1667, 1956
FokI GGATG 1 cut(s) 374
FriOI GRGCYC 1 cut(s) 828
Fsp4HI GCNGC 4 cut(s) 32, 1062, 1667, 1956
FspBI CTAG 6 cut(s) 383, 549, 768, 1175, 1670, 1757
GlaI GCGC 1 cut(s) 1954
GluI GCNGC 4 cut(s) 32, 1062, 1667, 1956
GsuI CTGGAG 2 cut(s) 92, 342
HaeII RGCGCY 1 cut(s) 1956
HaeIII GGCC 5 cut(s) 123, 644, 789, 810, 1369
HapII CCGG 2 cut(s) 306, 1268
HhaI GCGC 1 cut(s) 1955
Hin6I GCGC 1 cut(s) 1953
HinP1I GCGC 1 cut(s) 1953
HincII GTYRAC 1 cut(s) 319
HindII GTYRAC 1 cut(s) 319
HindIII AAGCTT 2 cut(s) 941, 1148
HpaII CCGG 2 cut(s) 306, 1268
HphI GGTGA 5 cut(s) 674, 695, 964, 1685, 1923
Hpy166II GTNNAC 4 cut(s) 319, 354, 524, 1990
Hpy188I TCNGA 7 cut(s) 16, 586, 715, 1090, 1182, 1798, 1974
Hpy8I GTNNAC 4 cut(s) 319, 354, 524, 1990
Hpy99I CGWCG 2 cut(s) 320, 1488
HpyAV CCTTC 3 cut(s) 40, 537, 1196
HpyCH4III ACNGT 9 cut(s) 39, 53, 617, 720, 1130, 1222, 1247, 1840, 1900
HpyCH4IV ACGT 3 cut(s) 315, 364, 1336
HpyF10VI GCNNNNNNNGC 3 cut(s) 795, 1067, 1476
HpyF3I CTNAG 6 cut(s) 15, 161, 1331, 1559, 1579, 1727
HpySE526I ACGT 3 cut(s) 315, 364, 1336
HspAI GCGC 1 cut(s) 1953
Ksp22I TGATCA 2 cut(s) 741, 901
LmnI GCTCC 4 cut(s) 478, 823, 1264, 1423
Lsp1109I GCAGC 4 cut(s) 43, 1073, 1678, 1942
LweI GCATC 3 cut(s) 253, 265, 1699
MaeI CTAG 6 cut(s) 383, 549, 768, 1175, 1670, 1757
MaeII ACGT 3 cut(s) 315, 364, 1336
MaeIII GTNAC 5 cut(s) 213, 908, 1638, 1730, 1914
MboII GAAGA 7 cut(s) 573, 632, 635, 769, 1589, 1634, 1790
MfeI CAATTG 4 cut(s) 444, 773, 1097, 1104
MflI RGATCY 1 cut(s) 551
MhlI GDGCHC 1 cut(s) 828
MlyI GAGTC 8 cut(s) 359, 458, 572, 1177, 1298, 1512, 1712, 1727
MspA1I CMGCKG 1 cut(s) 1330
MspCI CTTAAG 1 cut(s) 1712
MspI CCGG 2 cut(s) 306, 1268
MunI CAATTG 4 cut(s) 444, 773, 1097, 1104
Mva1269I GAATGC 1 cut(s) 698
MvnI CGCG 1 cut(s) 1408
MwoI GCNNNNNNNGC 3 cut(s) 795, 1067, 1476
NlaIV GGNNCC 4 cut(s) 21, 124, 1207, 1266
NmuCI GTSAC 3 cut(s) 1638, 1730, 1914
NruI TCGCGA 1 cut(s) 1408
NspI RCATGY 1 cut(s) 1804
NspV TTCGAA 2 cut(s) 841, 1355
PaeR7I CTCGAG 1 cut(s) 1306
PagI TCATGA 1 cut(s) 972
PciI ACATGT 1 cut(s) 1800
PctI GAATGC 1 cut(s) 698
PfeI GAWTC 6 cut(s) 245, 309, 916, 1510, 1545, 1818
PkrI GCNGC 4 cut(s) 33, 1063, 1668, 1957
PleI GAGTC 8 cut(s) 358, 457, 571, 1177, 1298, 1511, 1712, 1727
PpsI GAGTC 8 cut(s) 358, 457, 571, 1177, 1298, 1511, 1712, 1727
PscI ACATGT 1 cut(s) 1800
PshBI ATTAAT 1 cut(s) 239
PsiI TTATAA 1 cut(s) 1968
Psp124BI GAGCTC 1 cut(s) 828
PspEI GGTNACC 1 cut(s) 908
PspN4I GGNNCC 4 cut(s) 21, 124, 1207, 1266
PspPI GGNCC 5 cut(s) 85, 122, 1026, 1206, 1368
PspXI VCTCGAGB 1 cut(s) 1306
PsrI GAACNNNNNNTAC 2 cut(s) 708, 740
PstNI CAGNNNCTG 1 cut(s) 1467
PsuI RGATCY 1 cut(s) 551
PvuII CAGCTG 1 cut(s) 1330
RruI TCGCGA 1 cut(s) 1408
RsaI GTAC 7 cut(s) 525, 726, 859, 1244, 1339, 1376, 1938
RsaNI GTAC 7 cut(s) 524, 725, 858, 1243, 1338, 1375, 1937
SacI GAGCTC 1 cut(s) 828
SalI GTCGAC 1 cut(s) 317
SatI GCNGC 4 cut(s) 32, 1062, 1667, 1956
Sau96I GGNCC 5 cut(s) 85, 122, 1026, 1206, 1368
ScaI AGTACT 1 cut(s) 1244
SchI GAGTC 8 cut(s) 359, 458, 572, 1177, 1298, 1512, 1712, 1727
SduI GDGCHC 1 cut(s) 828
SfaNI GCATC 3 cut(s) 253, 265, 1699
SfcI CTRYAG 4 cut(s) 192, 1129, 1246, 1899
Sfr274I CTCGAG 1 cut(s) 1306
SfuI TTCGAA 2 cut(s) 841, 1355
SinI GGWCC 3 cut(s) 85, 1026, 1206
SlaI CTCGAG 1 cut(s) 1306
SmlI CTYRAG 7 cut(s) 178, 204, 1191, 1306, 1712, 1856, 1998
SmoI CTYRAG 7 cut(s) 178, 204, 1191, 1306, 1712, 1856, 1998
SsiI CCGC 3 cut(s) 88, 1134, 1295
SspI AATATT 1 cut(s) 372
SspMI CTAG 6 cut(s) 383, 549, 768, 1175, 1670, 1757
SstI GAGCTC 1 cut(s) 828
TaaI ACNGT 9 cut(s) 39, 53, 617, 720, 1130, 1222, 1247, 1840, 1900
TaiI ACGT 3 cut(s) 318, 367, 1339
TaqI TCGA 9 cut(s) 282, 318, 841, 1077, 1307, 1348, 1355, 1575, 1821
TatI WGTACW 3 cut(s) 724, 1242, 1936
TfiI GAWTC 6 cut(s) 245, 309, 916, 1510, 1545, 1818
TscAI CASTG 6 cut(s) 48, 97, 684, 1036, 1647, 1692
TseFI GTSAC 3 cut(s) 1638, 1730, 1914
TseI GCWGC 4 cut(s) 31, 1061, 1666, 1955
Tsp45I GTSAC 3 cut(s) 1638, 1730, 1914
TspRI CASTG 6 cut(s) 48, 97, 684, 1036, 1647, 1692
Vha464I CTTAAG 1 cut(s) 1712
VpaK11BI GGWCC 3 cut(s) 85, 1026, 1206
VspI ATTAAT 1 cut(s) 239
XapI RAATTY 4 cut(s) 326, 992, 1084, 1138
XceI RCATGY 1 cut(s) 1804
XcmI CCANNNNNNNNNTGG 1 cut(s) 116
XhoI CTCGAG 1 cut(s) 1306
XmiI GTMKAC 2 cut(s) 318, 353
XspI CTAG 6 cut(s) 383, 549, 768, 1175, 1670, 1757
ZrmI AGTACT 1 cut(s) 1244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.