MINDY deubiquitinase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G07920 |
| malus_domestica | MD03G1050000.v1.1 MD11G1052200.v1.1 |
| prunus_persica | Prupe.6G039800_v2.0.a1 |
| pyrus_communis | pycom03g03960 pycom11g04260 |
| rosa_chinensis | RchiOBHm_Chr1g0379851 RchiOBHm_Chr1g0379891 |
| rosa_laevigata | RLG00000026352 RLG00000026354 |
| rosa_multiflora | Rmu_co8429969.1_g000001 Rmu_sc0004184.1_g000024 Rmu_sc0004184.1_g000025 Rmu_sc0004184.1_g000026 Rmu_sc0014259.1_g000013 |
| rosa_roxburghii | Rroxscaffold_4G00279870 Rroxscaffold_4G00279880 |
| rosa_rugosa | Rorug01G0415400 Rorug01G0415500 Rorug01G0415600 |
| rosa_samantha | Rh1AG439500 Rh1AG439600 Rh1AG439700 Rh1BG395500 Rh1BG395600 Rh1BG395700 Rh1BG395800 Rh1CG408700 Rh1CG408800 Rh1CG408900 Rh1CG409400 Rh1DG426400 Rh1DG426500 Rh1DG426600 Rh1DG426700 |
| rosa_wichuraiana | Rw1G038260 Rw1G038270 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1968 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1760 |
| AccI | GTMKAC | 2 cut(s) | 318, 353 |
| AccII | CGCG | 1 cut(s) | 1408 |
| AciI | CCGC | 3 cut(s) | 88, 1134, 1295 |
| AclWI | GGATC | 5 cut(s) | 410, 680, 1278, 1321, 1916 |
| AcsI | RAATTY | 4 cut(s) | 326, 992, 1084, 1138 |
| AcuI | CTGAAG | 3 cut(s) | 660, 838, 1050 |
| AdeI | CACNNNGTG | 1 cut(s) | 521 |
| AfaI | GTAC | 7 cut(s) | 525, 726, 859, 1244, 1339, 1376, 1938 |
| AflII | CTTAAG | 1 cut(s) | 1712 |
| AflIII | ACRYGT | 1 cut(s) | 1800 |
| AgsI | TTSAA | 7 cut(s) | 77, 672, 757, 988, 1202, 1601, 1778 |
| Alw21I | GWGCWC | 1 cut(s) | 828 |
| Alw26I | GTCTC | 8 cut(s) | 205, 425, 570, 606, 1327, 1458, 1746, 1829 |
| AlwI | GGATC | 5 cut(s) | 410, 680, 1278, 1321, 1916 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1467 |
| Ama87I | CYCGRG | 1 cut(s) | 1306 |
| AoxI | GGCC | 5 cut(s) | 121, 642, 787, 808, 1367 |
| ApeKI | GCWGC | 4 cut(s) | 31, 1061, 1666, 1955 |
| ApoI | RAATTY | 4 cut(s) | 326, 992, 1084, 1138 |
| AseI | ATTAAT | 1 cut(s) | 239 |
| AspLEI | GCGC | 1 cut(s) | 1955 |
| AspS9I | GGNCC | 5 cut(s) | 85, 122, 1026, 1206, 1368 |
| AsuHPI | GGTGA | 5 cut(s) | 674, 695, 964, 1685, 1923 |
| AsuII | TTCGAA | 2 cut(s) | 841, 1355 |
| AvaI | CYCGRG | 1 cut(s) | 1306 |
| AvaII | GGWCC | 3 cut(s) | 85, 1026, 1206 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 841, 874 |
| BanII | GRGCYC | 1 cut(s) | 828 |
| Bbv12I | GWGCWC | 1 cut(s) | 828 |
| BbvI | GCAGC | 4 cut(s) | 43, 1073, 1678, 1942 |
| BccI | CCATC | 5 cut(s) | 149, 800, 1151, 1386, 1577 |
| BceAI | ACGGC | 1 cut(s) | 802 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1025, 1059 |
| BclI | TGATCA | 2 cut(s) | 741, 901 |
| BcoDI | GTCTC | 8 cut(s) | 205, 425, 570, 606, 1327, 1458, 1746, 1829 |
| BfaI | CTAG | 6 cut(s) | 383, 549, 768, 1175, 1670, 1757 |
| BfmI | CTRYAG | 4 cut(s) | 192, 1129, 1246, 1899 |
| BfoI | RGCGCY | 1 cut(s) | 1956 |
| BfrI | CTTAAG | 1 cut(s) | 1712 |
| BglII | AGATCT | 1 cut(s) | 551 |
| BisI | GCNGC | 4 cut(s) | 32, 1062, 1667, 1956 |
| BlsI | GCNGC | 4 cut(s) | 33, 1063, 1668, 1957 |
| BmcAI | AGTACT | 1 cut(s) | 1244 |
| Bme18I | GGWCC | 3 cut(s) | 85, 1026, 1206 |
| BmeT110I | CYCGRG | 1 cut(s) | 1306 |
| BmgT120I | GGNCC | 5 cut(s) | 85, 122, 1026, 1206, 1368 |
| BmiI | GGNNCC | 4 cut(s) | 21, 124, 1207, 1266 |
| BmsI | GCATC | 3 cut(s) | 253, 265, 1699 |
| BpmI | CTGGAG | 2 cut(s) | 92, 342 |
| Bpu14I | TTCGAA | 2 cut(s) | 841, 1355 |
| BpuEI | CTTGAG | 5 cut(s) | 189, 199, 1176, 1877, 1983 |
| Bsa29I | ATCGAT | 1 cut(s) | 282 |
| BsaI | GGTCTC | 2 cut(s) | 606, 1746 |
| BsaWI | WCCGGW | 1 cut(s) | 305 |
| Bse1I | ACTGG | 3 cut(s) | 982, 1499, 1647 |
| Bse3DI | GCAATG | 1 cut(s) | 495 |
| BseCI | ATCGAT | 1 cut(s) | 282 |
| BseGI | GGATG | 1 cut(s) | 387 |
| BseMI | GCAATG | 1 cut(s) | 495 |
| BseMII | CTCAG | 4 cut(s) | 6, 152, 1322, 1718 |
| BseNI | ACTGG | 3 cut(s) | 982, 1499, 1647 |
| BseRI | GAGGAG | 3 cut(s) | 125, 1176, 1179 |
| BseXI | GCAGC | 4 cut(s) | 43, 1073, 1678, 1942 |
| BsgI | GTGCAG | 2 cut(s) | 204, 1080 |
| Bsh1236I | CGCG | 1 cut(s) | 1408 |
| BshFI | GGCC | 5 cut(s) | 123, 644, 789, 810, 1369 |
| BshVI | ATCGAT | 1 cut(s) | 282 |
| BsiHKAI | GWGCWC | 1 cut(s) | 828 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1306 |
| BsiSI | CCGG | 2 cut(s) | 306, 1268 |
| BsmAI | GTCTC | 8 cut(s) | 205, 425, 570, 606, 1327, 1458, 1746, 1829 |
| BsmBI | CGTCTC | 1 cut(s) | 1327 |
| BsmI | GAATGC | 1 cut(s) | 698 |
| BsnI | GGCC | 5 cut(s) | 123, 644, 789, 810, 1369 |
| Bso31I | GGTCTC | 2 cut(s) | 606, 1746 |
| BsoBI | CYCGRG | 1 cut(s) | 1306 |
| Bsp119I | TTCGAA | 2 cut(s) | 841, 1355 |
| Bsp1286I | GDGCHC | 1 cut(s) | 828 |
| Bsp1407I | TGTACA | 1 cut(s) | 724 |
| Bsp68I | TCGCGA | 1 cut(s) | 1408 |
| BspACI | CCGC | 3 cut(s) | 88, 1134, 1295 |
| BspANI | GGCC | 5 cut(s) | 123, 644, 789, 810, 1369 |
| BspCNI | CTCAG | 4 cut(s) | 7, 153, 1323, 1719 |
| BspDI | ATCGAT | 1 cut(s) | 282 |
| BspFNI | CGCG | 1 cut(s) | 1408 |
| BspHI | TCATGA | 1 cut(s) | 972 |
| BspLI | GGNNCC | 4 cut(s) | 21, 124, 1207, 1266 |
| BspPI | GGATC | 5 cut(s) | 410, 680, 1278, 1321, 1916 |
| BspT104I | TTCGAA | 2 cut(s) | 841, 1355 |
| BspTI | CTTAAG | 1 cut(s) | 1712 |
| BspTNI | GGTCTC | 2 cut(s) | 606, 1746 |
| BsrDI | GCAATG | 1 cut(s) | 495 |
| BsrGI | TGTACA | 1 cut(s) | 724 |
| BsrI | ACTGG | 3 cut(s) | 982, 1499, 1647 |
| Bst4CI | ACNGT | 9 cut(s) | 39, 53, 617, 720, 1130, 1222, 1247, 1840, 1900 |
| Bst6I | CTCTTC | 1 cut(s) | 1602 |
| BstAFI | CTTAAG | 1 cut(s) | 1712 |
| BstAUI | TGTACA | 1 cut(s) | 724 |
| BstBI | TTCGAA | 2 cut(s) | 841, 1355 |
| BstC8I | GCNNGC | 4 cut(s) | 1048, 1072, 1293, 1590 |
| BstDEI | CTNAG | 6 cut(s) | 15, 161, 1331, 1559, 1579, 1727 |
| BstEII | GGTNACC | 1 cut(s) | 908 |
| BstF5I | GGATG | 1 cut(s) | 387 |
| BstFNI | CGCG | 1 cut(s) | 1408 |
| BstH2I | RGCGCY | 1 cut(s) | 1956 |
| BstHHI | GCGC | 1 cut(s) | 1955 |
| BstMAI | GTCTC | 8 cut(s) | 205, 425, 570, 606, 1327, 1458, 1746, 1829 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 795, 1067, 1476 |
| BstNSI | RCATGY | 1 cut(s) | 1804 |
| BstPI | GGTNACC | 1 cut(s) | 908 |
| BstSFI | CTRYAG | 4 cut(s) | 192, 1129, 1246, 1899 |
| BstUI | CGCG | 1 cut(s) | 1408 |
| BstV1I | GCAGC | 4 cut(s) | 43, 1073, 1678, 1942 |
| BstX2I | RGATCY | 1 cut(s) | 551 |
| BstYI | RGATCY | 1 cut(s) | 551 |
| Bsu15I | ATCGAT | 1 cut(s) | 282 |
| BsuRI | GGCC | 5 cut(s) | 123, 644, 789, 810, 1369 |
| BsuTUI | ATCGAT | 1 cut(s) | 282 |
| BtsCI | GGATG | 1 cut(s) | 387 |
| BtsI | GCAGTG | 3 cut(s) | 90, 1029, 1685 |
| BtsIMutI | CAGTG | 6 cut(s) | 48, 90, 684, 1029, 1640, 1685 |
| BtuMI | TCGCGA | 1 cut(s) | 1408 |
| Cac8I | GCNNGC | 4 cut(s) | 1048, 1072, 1293, 1590 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1467 |
| CciI | TCATGA | 1 cut(s) | 972 |
| CfoI | GCGC | 1 cut(s) | 1955 |
| Cfr13I | GGNCC | 5 cut(s) | 85, 122, 1026, 1206, 1368 |
| ClaI | ATCGAT | 1 cut(s) | 282 |
| Csp6I | GTAC | 7 cut(s) | 524, 725, 858, 1243, 1338, 1375, 1937 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 660, 695, 1132, 1167, 1643, 1678 |
| CviQI | GTAC | 7 cut(s) | 524, 725, 858, 1243, 1338, 1375, 1937 |
| DdeI | CTNAG | 6 cut(s) | 15, 161, 1331, 1559, 1579, 1727 |
| DraI | TTTAAA | 1 cut(s) | 997 |
| DraIII | CACNNNGTG | 1 cut(s) | 521 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1760 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1760 |
| Eam1104I | CTCTTC | 1 cut(s) | 1602 |
| EarI | CTCTTC | 1 cut(s) | 1602 |
| Ecl136II | GAGCTC | 1 cut(s) | 826 |
| Eco24I | GRGCYC | 1 cut(s) | 828 |
| Eco31I | GGTCTC | 2 cut(s) | 606, 1746 |
| Eco47I | GGWCC | 3 cut(s) | 85, 1026, 1206 |
| Eco53kI | GAGCTC | 1 cut(s) | 826 |
| Eco57I | CTGAAG | 3 cut(s) | 660, 838, 1050 |
| Eco88I | CYCGRG | 1 cut(s) | 1306 |
| Eco91I | GGTNACC | 1 cut(s) | 908 |
| EcoICRI | GAGCTC | 1 cut(s) | 826 |
| EcoO65I | GGTNACC | 1 cut(s) | 908 |
| EcoT38I | GRGCYC | 1 cut(s) | 828 |
| Esp3I | CGTCTC | 1 cut(s) | 1327 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 795, 827, 873, 905 |
| FbaI | TGATCA | 2 cut(s) | 741, 901 |
| FblI | GTMKAC | 2 cut(s) | 318, 353 |
| Fnu4HI | GCNGC | 4 cut(s) | 32, 1062, 1667, 1956 |
| FokI | GGATG | 1 cut(s) | 374 |
| FriOI | GRGCYC | 1 cut(s) | 828 |
| Fsp4HI | GCNGC | 4 cut(s) | 32, 1062, 1667, 1956 |
| FspBI | CTAG | 6 cut(s) | 383, 549, 768, 1175, 1670, 1757 |
| GlaI | GCGC | 1 cut(s) | 1954 |
| GluI | GCNGC | 4 cut(s) | 32, 1062, 1667, 1956 |
| GsuI | CTGGAG | 2 cut(s) | 92, 342 |
| HaeII | RGCGCY | 1 cut(s) | 1956 |
| HaeIII | GGCC | 5 cut(s) | 123, 644, 789, 810, 1369 |
| HapII | CCGG | 2 cut(s) | 306, 1268 |
| HhaI | GCGC | 1 cut(s) | 1955 |
| Hin6I | GCGC | 1 cut(s) | 1953 |
| HinP1I | GCGC | 1 cut(s) | 1953 |
| HincII | GTYRAC | 1 cut(s) | 319 |
| HindII | GTYRAC | 1 cut(s) | 319 |
| HindIII | AAGCTT | 2 cut(s) | 941, 1148 |
| HpaII | CCGG | 2 cut(s) | 306, 1268 |
| HphI | GGTGA | 5 cut(s) | 674, 695, 964, 1685, 1923 |
| Hpy166II | GTNNAC | 4 cut(s) | 319, 354, 524, 1990 |
| Hpy188I | TCNGA | 7 cut(s) | 16, 586, 715, 1090, 1182, 1798, 1974 |
| Hpy8I | GTNNAC | 4 cut(s) | 319, 354, 524, 1990 |
| Hpy99I | CGWCG | 2 cut(s) | 320, 1488 |
| HpyAV | CCTTC | 3 cut(s) | 40, 537, 1196 |
| HpyCH4III | ACNGT | 9 cut(s) | 39, 53, 617, 720, 1130, 1222, 1247, 1840, 1900 |
| HpyCH4IV | ACGT | 3 cut(s) | 315, 364, 1336 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 795, 1067, 1476 |
| HpyF3I | CTNAG | 6 cut(s) | 15, 161, 1331, 1559, 1579, 1727 |
| HpySE526I | ACGT | 3 cut(s) | 315, 364, 1336 |
| HspAI | GCGC | 1 cut(s) | 1953 |
| Ksp22I | TGATCA | 2 cut(s) | 741, 901 |
| LmnI | GCTCC | 4 cut(s) | 478, 823, 1264, 1423 |
| Lsp1109I | GCAGC | 4 cut(s) | 43, 1073, 1678, 1942 |
| LweI | GCATC | 3 cut(s) | 253, 265, 1699 |
| MaeI | CTAG | 6 cut(s) | 383, 549, 768, 1175, 1670, 1757 |
| MaeII | ACGT | 3 cut(s) | 315, 364, 1336 |
| MaeIII | GTNAC | 5 cut(s) | 213, 908, 1638, 1730, 1914 |
| MboII | GAAGA | 7 cut(s) | 573, 632, 635, 769, 1589, 1634, 1790 |
| MfeI | CAATTG | 4 cut(s) | 444, 773, 1097, 1104 |
| MflI | RGATCY | 1 cut(s) | 551 |
| MhlI | GDGCHC | 1 cut(s) | 828 |
| MlyI | GAGTC | 8 cut(s) | 359, 458, 572, 1177, 1298, 1512, 1712, 1727 |
| MspA1I | CMGCKG | 1 cut(s) | 1330 |
| MspCI | CTTAAG | 1 cut(s) | 1712 |
| MspI | CCGG | 2 cut(s) | 306, 1268 |
| MunI | CAATTG | 4 cut(s) | 444, 773, 1097, 1104 |
| Mva1269I | GAATGC | 1 cut(s) | 698 |
| MvnI | CGCG | 1 cut(s) | 1408 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 795, 1067, 1476 |
| NlaIV | GGNNCC | 4 cut(s) | 21, 124, 1207, 1266 |
| NmuCI | GTSAC | 3 cut(s) | 1638, 1730, 1914 |
| NruI | TCGCGA | 1 cut(s) | 1408 |
| NspI | RCATGY | 1 cut(s) | 1804 |
| NspV | TTCGAA | 2 cut(s) | 841, 1355 |
| PaeR7I | CTCGAG | 1 cut(s) | 1306 |
| PagI | TCATGA | 1 cut(s) | 972 |
| PciI | ACATGT | 1 cut(s) | 1800 |
| PctI | GAATGC | 1 cut(s) | 698 |
| PfeI | GAWTC | 6 cut(s) | 245, 309, 916, 1510, 1545, 1818 |
| PkrI | GCNGC | 4 cut(s) | 33, 1063, 1668, 1957 |
| PleI | GAGTC | 8 cut(s) | 358, 457, 571, 1177, 1298, 1511, 1712, 1727 |
| PpsI | GAGTC | 8 cut(s) | 358, 457, 571, 1177, 1298, 1511, 1712, 1727 |
| PscI | ACATGT | 1 cut(s) | 1800 |
| PshBI | ATTAAT | 1 cut(s) | 239 |
| PsiI | TTATAA | 1 cut(s) | 1968 |
| Psp124BI | GAGCTC | 1 cut(s) | 828 |
| PspEI | GGTNACC | 1 cut(s) | 908 |
| PspN4I | GGNNCC | 4 cut(s) | 21, 124, 1207, 1266 |
| PspPI | GGNCC | 5 cut(s) | 85, 122, 1026, 1206, 1368 |
| PspXI | VCTCGAGB | 1 cut(s) | 1306 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 708, 740 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1467 |
| PsuI | RGATCY | 1 cut(s) | 551 |
| PvuII | CAGCTG | 1 cut(s) | 1330 |
| RruI | TCGCGA | 1 cut(s) | 1408 |
| RsaI | GTAC | 7 cut(s) | 525, 726, 859, 1244, 1339, 1376, 1938 |
| RsaNI | GTAC | 7 cut(s) | 524, 725, 858, 1243, 1338, 1375, 1937 |
| SacI | GAGCTC | 1 cut(s) | 828 |
| SalI | GTCGAC | 1 cut(s) | 317 |
| SatI | GCNGC | 4 cut(s) | 32, 1062, 1667, 1956 |
| Sau96I | GGNCC | 5 cut(s) | 85, 122, 1026, 1206, 1368 |
| ScaI | AGTACT | 1 cut(s) | 1244 |
| SchI | GAGTC | 8 cut(s) | 359, 458, 572, 1177, 1298, 1512, 1712, 1727 |
| SduI | GDGCHC | 1 cut(s) | 828 |
| SfaNI | GCATC | 3 cut(s) | 253, 265, 1699 |
| SfcI | CTRYAG | 4 cut(s) | 192, 1129, 1246, 1899 |
| Sfr274I | CTCGAG | 1 cut(s) | 1306 |
| SfuI | TTCGAA | 2 cut(s) | 841, 1355 |
| SinI | GGWCC | 3 cut(s) | 85, 1026, 1206 |
| SlaI | CTCGAG | 1 cut(s) | 1306 |
| SmlI | CTYRAG | 7 cut(s) | 178, 204, 1191, 1306, 1712, 1856, 1998 |
| SmoI | CTYRAG | 7 cut(s) | 178, 204, 1191, 1306, 1712, 1856, 1998 |
| SsiI | CCGC | 3 cut(s) | 88, 1134, 1295 |
| SspI | AATATT | 1 cut(s) | 372 |
| SspMI | CTAG | 6 cut(s) | 383, 549, 768, 1175, 1670, 1757 |
| SstI | GAGCTC | 1 cut(s) | 828 |
| TaaI | ACNGT | 9 cut(s) | 39, 53, 617, 720, 1130, 1222, 1247, 1840, 1900 |
| TaiI | ACGT | 3 cut(s) | 318, 367, 1339 |
| TaqI | TCGA | 9 cut(s) | 282, 318, 841, 1077, 1307, 1348, 1355, 1575, 1821 |
| TatI | WGTACW | 3 cut(s) | 724, 1242, 1936 |
| TfiI | GAWTC | 6 cut(s) | 245, 309, 916, 1510, 1545, 1818 |
| TscAI | CASTG | 6 cut(s) | 48, 97, 684, 1036, 1647, 1692 |
| TseFI | GTSAC | 3 cut(s) | 1638, 1730, 1914 |
| TseI | GCWGC | 4 cut(s) | 31, 1061, 1666, 1955 |
| Tsp45I | GTSAC | 3 cut(s) | 1638, 1730, 1914 |
| TspRI | CASTG | 6 cut(s) | 48, 97, 684, 1036, 1647, 1692 |
| Vha464I | CTTAAG | 1 cut(s) | 1712 |
| VpaK11BI | GGWCC | 3 cut(s) | 85, 1026, 1206 |
| VspI | ATTAAT | 1 cut(s) | 239 |
| XapI | RAATTY | 4 cut(s) | 326, 992, 1084, 1138 |
| XceI | RCATGY | 1 cut(s) | 1804 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 116 |
| XhoI | CTCGAG | 1 cut(s) | 1306 |
| XmiI | GTMKAC | 2 cut(s) | 318, 353 |
| XspI | CTAG | 6 cut(s) | 383, 549, 768, 1175, 1670, 1757 |
| ZrmI | AGTACT | 1 cut(s) | 1244 |