Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003100

Physical Location & Seq

Genomic Coordinates Reverse (-)

66230419 .. 66232978

Gene Structure 2560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG439700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1719 bp

ATGGGGGAGCTTGTTGCACTGGAAACACAAAATATGACTGCAACACTCGGTGTGCCTTCCCCAAGCCTTTCTAAAACTAGATCTTTTGTTAAGTCGCTACATTCAGCTTCTTCTGATGAACCAAAGGTAATTAAAGCAGGAGACCGTGAAGAAGAAGCAGCGTTGTTAATGGCCTTACAAATGTCTATGGGTGGGCTTTCAACTTCAGTGGGTGATCCTGAATGCAGTAATTCTCATCAGTCAGAACTGTCTGTACAACAAGGGGAATTGATCAGGACTTTTTTGAAGAACAATGCTAGTCAATTGACTTACTATGGCCTTTTCTGCTTACAAGATGGCCTTATAGAGCAGGAGCTCTGTGTTTTCTTTCGAAACAATCACTTCAGTACCATGTTTAAGATCAATGGAGAACTTTATCTTTTGGCAACTGATCAGGGTTACCTGAATCAGCATGATTTGGTGTGGGAAAAGCTTAATGAGGTGAATGGAGATACATTGTTCATGACTGGCAATTTCAAGGAATTTAAAGTTGAAAACCAATCAAATGAAAATTGGACCACTGCCGACTACCTTGCCAGCATTGATAGTGCAGCTTCAGCAGGCTTCGATATAAATTCCGATCTGCAATTGGCAATTGCTCTGCAACAACAGGACTACTGTAGCGGAAATTCAACGAAGCTTGACGATGGAGAAAAGAGTGGTCTAGTTCTGACTCCTCCTCAAGTTCTTGAAGGGTCCAAGAAAAAAACTGTTCTTGTCAATTTCATGGAGTACTGTAGGGCTATGGTTAGGGAGCCGGATCATGTAATGAGTTTCATGCTTGCGGAATTGGACACGAGTGGATCGCTTGATGAACAGCTCAGGTTAGTTGTGAAGGGAAGATTTTTGCCAAAGAAGTTCGGAGCAATCTTGCGGAAATATGTCAATCAATATGTGATTTGCTTCGCATGCAAACGTACAAACACTCGACTTTCGAAAGAAAATCGGCCCAAGTACCATCTTATATGCGAGTGGTGTTGTGCTTCGCGATCAGTTGCTCCTATTAAAGCTGGTTTTGTTGCCAAAGTTGGAAAAAGGAACGTCACTGCTCAACGAGTGCGCGGTCGAGATCAGTTGCATCTTTATAGTGGTAGGAAGGAGACTGCTGTTTATGCTACCGACGTAAATACTGGAGTTGTGATTCGAATCCAGATATTTCATAGTTCTGTTAAACTCGACTTAGATGGGCTTGCCACTCTTCAAGTCCGTGCCTTTGATAATGAAGAAAATGTGTTTTCGTCACTGGTGGGATTGCAATTCATAAGCCATGTCATCAAGTCACCTGTAGTACTTGTCCTCGTTGGCGCTGCTGTTCGTTATAATCTGAAAGTTATTCGTGGGAACAAGGCTCAAGTGCTAACTCTGCCGTCTCCACATCATCAATGGTCTTCATTAAACTCTTCAGTTGCTCATGTTGACTCTATGAAGGGCTTGACAAACGCATTGAGCCTAGGGGTAACAAATGCCATAGTTGAAGATACAAGATTTTCTGGTGGAGCTACTTTTCATGCTACATTGCCTAATGAATACCACAACTTTGAAAGCTCTTTTCATGGACCTATTGTCTTAAAAGCATCTTCACTTATTGCGGCATATCCACCACCTAATGGTCGTCAAGCTGGTGATAGAAATCATTATGGTGGTTACTTTTTTGATTTGACTCTAACAGCTAGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MINDY_DUB

Protein Analysis

572

Amino Acids

63.25

Weight (kDa)

7.24

Isoelectric Point (pI)

31.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MINDY_DUB	PF04424	69 - 172	4e-37	MINDY deubiquitinase
eIF-5_eIF-2B	PF01873	236 - 341	1.9e-28	Domain found in IF2B/IF5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07920
malus_domestica	MD03G1050000.v1.1 MD11G1052200.v1.1
prunus_persica	Prupe.6G039800_v2.0.a1
pyrus_communis	pycom03g03960 pycom11g04260
rosa_chinensis	RchiOBHm_Chr1g0379851 RchiOBHm_Chr1g0379891
rosa_laevigata	RLG00000026352 RLG00000026354
rosa_multiflora	Rmu_co8429969.1_g000001 Rmu_sc0004184.1_g000024 Rmu_sc0004184.1_g000025 Rmu_sc0004184.1_g000026 Rmu_sc0014259.1_g000013
rosa_roxburghii	Rroxscaffold_4G00279870 Rroxscaffold_4G00279880
rosa_rugosa	Rorug01G0415400 Rorug01G0415500 Rorug01G0415600
rosa_samantha	Rh1AG439500 Rh1AG439600 Rh1AG439700 Rh1BG395500 Rh1BG395600 Rh1BG395700 Rh1BG395800 Rh1CG408700 Rh1CG408800 Rh1CG408900 Rh1CG409400 Rh1DG426400 Rh1DG426500 Rh1DG426600 Rh1DG426700
rosa_wichuraiana	Rw1G038260 Rw1G038270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1359
AccB7I	CCANNNNNTGG	1 cut(s)	1646
AccII	CGCG	2 cut(s)	1027, 1101
AciI	CCGC	5 cut(s)	663, 824, 913, 1101, 1628
AclWI	GGATC	3 cut(s)	209, 807, 850
AcsI	RAATTY	3 cut(s)	521, 613, 667
AcuI	CTGAAG	4 cut(s)	189, 367, 579, 1425
AdeI	CACNNNGTG	1 cut(s)	50
AfaI	GTAC	6 cut(s)	255, 388, 773, 958, 995, 1329
AfiI	CCNNNNNNNGG	1 cut(s)	1646
AgsI	TTSAA	9 cut(s)	201, 286, 517, 533, 672, 731, 1241, 1514, 1580
AhdI	GACNNNNNGTC	1 cut(s)	1601
Alw21I	GWGCWC	1 cut(s)	357
Alw26I	GTCTC	3 cut(s)	135, 1133, 1413
AlwI	GGATC	3 cut(s)	209, 807, 850
AoxI	GGCC	4 cut(s)	171, 316, 337, 986
ApeKI	GCWGC	3 cut(s)	158, 590, 1346
ApoI	RAATTY	3 cut(s)	521, 613, 667
AspA2I	CCTAGG	1 cut(s)	1489
AspLEI	GCGC	2 cut(s)	1101, 1346
AspS9I	GGNCC	4 cut(s)	555, 735, 987, 1595
AsuHPI	GGTGA	4 cut(s)	224, 493, 1311, 1673
AsuII	TTCGAA	3 cut(s)	370, 974, 1183
AvaII	GGWCC	3 cut(s)	555, 735, 1595
AvrII	CCTAGG	1 cut(s)	1489
BaeI	ACNNNNGTAYC	2 cut(s)	370, 403
BanII	GRGCYC	1 cut(s)	357
BauI	CACGAG	1 cut(s)	835
BbsI	GAAGAC	1 cut(s)	1419
Bbv12I	GWGCWC	1 cut(s)	357
BbvI	GCAGC	3 cut(s)	170, 602, 1333
BccI	CCATC	4 cut(s)	329, 680, 1005, 1217
BceAI	ACGGC	1 cut(s)	1390
BcgI	CGANNNNNNTGC	2 cut(s)	554, 588
BclI	TGATCA	2 cut(s)	270, 430
BcoDI	GTCTC	3 cut(s)	135, 1133, 1413
BfaI	CTAG	5 cut(s)	78, 297, 704, 1490, 1710
BfmI	CTRYAG	3 cut(s)	658, 775, 1323
BfoI	RGCGCY	1 cut(s)	1347
BglII	AGATCT	1 cut(s)	80
BisI	GCNGC	4 cut(s)	159, 591, 1347, 1629
BlnI	CCTAGG	1 cut(s)	1489
BlsI	GCNGC	4 cut(s)	160, 592, 1348, 1630
BmcAI	AGTACT	2 cut(s)	773, 1329
Bme18I	GGWCC	3 cut(s)	555, 735, 1595
BmeRI	GACNNNNNGTC	1 cut(s)	1601
BmgT120I	GGNCC	4 cut(s)	555, 735, 987, 1595
BmiI	GGNNCC	2 cut(s)	736, 795
BmsI	GCATC	2 cut(s)	1126, 1622
BpiI	GAAGAC	1 cut(s)	1419
BpmI	CTGGAG	1 cut(s)	1191
Bpu10I	CCTNAGC	1 cut(s)	860
Bpu14I	TTCGAA	3 cut(s)	370, 974, 1183
BpuEI	CTTGAG	2 cut(s)	705, 1374
BsaBI	GATNNNNATC	2 cut(s)	1184, 1668
BsaI	GGTCTC	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	1489
Bsc4I	CCNNNNNNNGG	1 cut(s)	1646
Bse1I	ACTGG	4 cut(s)	24, 511, 1174, 1287
Bse3DI	GCAATG	1 cut(s)	1553
Bse8I	GATNNNNATC	2 cut(s)	1184, 1668
BseDI	CCNNGG	1 cut(s)	1489
BseJI	GATNNNNATC	2 cut(s)	1184, 1668
BseLI	CCNNNNNNNGG	1 cut(s)	1646
BseMI	GCAATG	1 cut(s)	1553
BseMII	CTCAG	1 cut(s)	874
BseNI	ACTGG	4 cut(s)	24, 511, 1174, 1287
BseRI	GAGGAG	2 cut(s)	705, 708
BseXI	GCAGC	3 cut(s)	170, 602, 1333
BsgI	GTGCAG	1 cut(s)	609
Bsh1236I	CGCG	2 cut(s)	1027, 1101
Bsh1285I	CGRYCG	1 cut(s)	1105
BshFI	GGCC	4 cut(s)	173, 318, 339, 988
BsiEI	CGRYCG	1 cut(s)	1105
BsiHKAI	GWGCWC	1 cut(s)	357
BsiSI	CCGG	1 cut(s)	797
BslI	CCNNNNNNNGG	1 cut(s)	1646
BsmAI	GTCTC	3 cut(s)	135, 1133, 1413
BsmBI	CGTCTC	1 cut(s)	1413
BsmI	GAATGC	1 cut(s)	227
BsnI	GGCC	4 cut(s)	173, 318, 339, 988
Bso31I	GGTCTC	1 cut(s)	135
Bsp119I	TTCGAA	3 cut(s)	370, 974, 1183
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp1407I	TGTACA	1 cut(s)	253
Bsp68I	TCGCGA	1 cut(s)	1027
BspACI	CCGC	5 cut(s)	663, 824, 913, 1101, 1628
BspANI	GGCC	4 cut(s)	173, 318, 339, 988
BspCNI	CTCAG	1 cut(s)	873
BspFNI	CGCG	2 cut(s)	1027, 1101
BspHI	TCATGA	1 cut(s)	501
BspLI	GGNNCC	2 cut(s)	736, 795
BspPI	GGATC	3 cut(s)	209, 807, 850
BspT104I	TTCGAA	3 cut(s)	370, 974, 1183
BspTNI	GGTCTC	1 cut(s)	135
BsrDI	GCAATG	1 cut(s)	1553
BsrGI	TGTACA	1 cut(s)	253
BsrI	ACTGG	4 cut(s)	24, 511, 1174, 1287
BssECI	CCNNGG	1 cut(s)	1489
BssSI	CACGAG	1 cut(s)	835
BssT1I	CCWWGG	1 cut(s)	1489
Bst2BI	CACGAG	1 cut(s)	835
Bst4CI	ACNGT	5 cut(s)	146, 249, 659, 751, 776
Bst6I	CTCTTC	2 cut(s)	1242, 1444
BstAUI	TGTACA	1 cut(s)	253
BstBI	TTCGAA	3 cut(s)	370, 974, 1183
BstC8I	GCNNGC	5 cut(s)	577, 601, 822, 949, 1230
BstDEI	CTNAG	2 cut(s)	860, 1219
BstEII	GGTNACC	1 cut(s)	437
BstFNI	CGCG	2 cut(s)	1027, 1101
BstH2I	RGCGCY	1 cut(s)	1347
BstHHI	GCGC	2 cut(s)	1101, 1346
BstMAI	GTCTC	3 cut(s)	135, 1133, 1413
BstMCI	CGRYCG	1 cut(s)	1105
BstMWI	GCNNNNNNNGC	5 cut(s)	324, 596, 948, 1151, 1402
BstNSI	RCATGY	1 cut(s)	951
BstPI	GGTNACC	1 cut(s)	437
BstSFI	CTRYAG	3 cut(s)	658, 775, 1323
BstUI	CGCG	2 cut(s)	1027, 1101
BstV1I	GCAGC	3 cut(s)	170, 602, 1333
BstV2I	GAAGAC	1 cut(s)	1419
BstX2I	RGATCY	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	80
BsuRI	GGCC	4 cut(s)	173, 318, 339, 988
BtsI	GCAGTG	2 cut(s)	558, 1083
BtsIMutI	CAGTG	5 cut(s)	17, 213, 558, 1083, 1280
BtuMI	TCGCGA	1 cut(s)	1027
Cac8I	GCNNGC	5 cut(s)	577, 601, 822, 949, 1230
CciI	TCATGA	1 cut(s)	501
CfoI	GCGC	2 cut(s)	1101, 1346
Cfr13I	GGNCC	4 cut(s)	555, 735, 987, 1595
Csp6I	GTAC	6 cut(s)	254, 387, 772, 957, 994, 1328
CspCI	CAANNNNNGTGG	2 cut(s)	189, 224
CviQI	GTAC	6 cut(s)	254, 387, 772, 957, 994, 1328
DdeI	CTNAG	2 cut(s)	860, 1219
DraI	TTTAAA	1 cut(s)	526
DraIII	CACNNNGTG	1 cut(s)	50
DriI	GACNNNNNGTC	1 cut(s)	1601
Eam1104I	CTCTTC	2 cut(s)	1242, 1444
Eam1105I	GACNNNNNGTC	1 cut(s)	1601
EarI	CTCTTC	2 cut(s)	1242, 1444
Ecl136II	GAGCTC	1 cut(s)	355
Eco130I	CCWWGG	1 cut(s)	1489
Eco24I	GRGCYC	1 cut(s)	357
Eco31I	GGTCTC	1 cut(s)	135
Eco47I	GGWCC	3 cut(s)	555, 735, 1595
Eco53kI	GAGCTC	1 cut(s)	355
Eco57I	CTGAAG	4 cut(s)	189, 367, 579, 1425
Eco91I	GGTNACC	1 cut(s)	437
EcoICRI	GAGCTC	1 cut(s)	355
EcoO65I	GGTNACC	1 cut(s)	437
EcoT14I	CCWWGG	1 cut(s)	1489
EcoT38I	GRGCYC	1 cut(s)	357
ErhI	CCWWGG	1 cut(s)	1489
Esp3I	CGTCTC	1 cut(s)	1413
FalI	AAGNNNNNCTT	2 cut(s)	324, 356
FbaI	TGATCA	2 cut(s)	270, 430
Fnu4HI	GCNGC	4 cut(s)	159, 591, 1347, 1629
FriOI	GRGCYC	1 cut(s)	357
Fsp4HI	GCNGC	4 cut(s)	159, 591, 1347, 1629
FspBI	CTAG	5 cut(s)	78, 297, 704, 1490, 1710
GlaI	GCGC	2 cut(s)	1100, 1345
GluI	GCNGC	4 cut(s)	159, 591, 1347, 1629
GsuI	CTGGAG	1 cut(s)	1191
HaeII	RGCGCY	1 cut(s)	1347
HaeIII	GGCC	4 cut(s)	173, 318, 339, 988
HapII	CCGG	1 cut(s)	797
HhaI	GCGC	2 cut(s)	1101, 1346
Hin6I	GCGC	2 cut(s)	1099, 1344
HinP1I	GCGC	2 cut(s)	1099, 1344
HincII	GTYRAC	1 cut(s)	1456
HindII	GTYRAC	1 cut(s)	1456
HindIII	AAGCTT	2 cut(s)	470, 677
HinfI	GANTC	6 cut(s)	445, 712, 1180, 1185, 1457, 1699
HpaII	CCGG	1 cut(s)	797
HphI	GGTGA	4 cut(s)	224, 493, 1311, 1673
Hpy166II	GTNNAC	1 cut(s)	1456
Hpy188I	TCNGA	6 cut(s)	115, 244, 619, 711, 902, 1365
Hpy188III	TCNNGA	7 cut(s)	218, 274, 502, 728, 1026, 1106, 1189
Hpy8I	GTNNAC	1 cut(s)	1456
Hpy99I	CGWCG	1 cut(s)	1163
HpyAV	CCTTC	5 cut(s)	66, 725, 868, 1129, 1459
HpyCH4III	ACNGT	5 cut(s)	146, 249, 659, 751, 776
HpyCH4IV	ACGT	3 cut(s)	955, 1080, 1161
HpyCH4V	TGCA	9 cut(s)	17, 41, 225, 590, 625, 643, 951, 1117, 1294
HpyF10VI	GCNNNNNNNGC	5 cut(s)	324, 596, 948, 1151, 1402
HpyF3I	CTNAG	2 cut(s)	860, 1219
HpySE526I	ACGT	3 cut(s)	955, 1080, 1161
HspAI	GCGC	2 cut(s)	1099, 1344
Ksp22I	TGATCA	2 cut(s)	270, 430
LmnI	GCTCC	6 cut(s)	7, 352, 793, 902, 1042, 1535
Lsp1109I	GCAGC	3 cut(s)	170, 602, 1333
LweI	GCATC	2 cut(s)	1126, 1622
MaeI	CTAG	5 cut(s)	78, 297, 704, 1490, 1710
MaeII	ACGT	3 cut(s)	955, 1080, 1161
MaeIII	GTNAC	6 cut(s)	437, 1081, 1278, 1317, 1495, 1682
MfeI	CAATTG	3 cut(s)	302, 626, 633
MflI	RGATCY	1 cut(s)	80
MhlI	GDGCHC	1 cut(s)	357
MlyI	GAGTC	3 cut(s)	706, 1451, 1693
MmeI	TCCRAC	1 cut(s)	1048
MnlI	CCTC	4 cut(s)	472, 726, 729, 1346
MslI	CAYNNNNRTG	1 cut(s)	1677
MspI	CCGG	1 cut(s)	797
MunI	CAATTG	3 cut(s)	302, 626, 633
Mva1269I	GAATGC	1 cut(s)	227
MvnI	CGCG	2 cut(s)	1027, 1101
MwoI	GCNNNNNNNGC	5 cut(s)	324, 596, 948, 1151, 1402
NlaIV	GGNNCC	2 cut(s)	736, 795
NmuCI	GTSAC	3 cut(s)	1081, 1278, 1317
NruI	TCGCGA	1 cut(s)	1027
NspI	RCATGY	1 cut(s)	951
NspV	TTCGAA	3 cut(s)	370, 974, 1183
PaeI	GCATGC	1 cut(s)	951
PagI	TCATGA	1 cut(s)	501
PctI	GAATGC	1 cut(s)	227
PfeI	GAWTC	3 cut(s)	445, 1180, 1185
PflMI	CCANNNNNTGG	1 cut(s)	1646
PkrI	GCNGC	4 cut(s)	160, 592, 1348, 1630
PleI	GAGTC	3 cut(s)	706, 1451, 1693
PpsI	GAGTC	3 cut(s)	706, 1451, 1693
PsiI	TTATAA	1 cut(s)	1359
Psp124BI	GAGCTC	1 cut(s)	357
PspEI	GGTNACC	1 cut(s)	437
PspN4I	GGNNCC	2 cut(s)	736, 795
PspPI	GGNCC	4 cut(s)	555, 735, 987, 1595
PsrI	GAACNNNNNNTAC	2 cut(s)	237, 269
PsuI	RGATCY	1 cut(s)	80
RruI	TCGCGA	1 cut(s)	1027
RsaI	GTAC	6 cut(s)	255, 388, 773, 958, 995, 1329
RsaNI	GTAC	6 cut(s)	254, 387, 772, 957, 994, 1328
RseI	CAYNNNNRTG	1 cut(s)	1677
SacI	GAGCTC	1 cut(s)	357
SatI	GCNGC	4 cut(s)	159, 591, 1347, 1629
Sau96I	GGNCC	4 cut(s)	555, 735, 987, 1595
ScaI	AGTACT	2 cut(s)	773, 1329
SchI	GAGTC	3 cut(s)	706, 1451, 1693
SduI	GDGCHC	1 cut(s)	357
SfaNI	GCATC	2 cut(s)	1126, 1622
SfcI	CTRYAG	3 cut(s)	658, 775, 1323
SfuI	TTCGAA	3 cut(s)	370, 974, 1183
SinI	GGWCC	3 cut(s)	555, 735, 1595
SmiMI	CAYNNNNRTG	1 cut(s)	1677
SmlI	CTYRAG	2 cut(s)	720, 1389
SmoI	CTYRAG	2 cut(s)	720, 1389
SphI	GCATGC	1 cut(s)	951
SsiI	CCGC	5 cut(s)	663, 824, 913, 1101, 1628
SspMI	CTAG	5 cut(s)	78, 297, 704, 1490, 1710
SstI	GAGCTC	1 cut(s)	357
StyI	CCWWGG	1 cut(s)	1489
TaaI	ACNGT	5 cut(s)	146, 249, 659, 751, 776
TaiI	ACGT	3 cut(s)	958, 1083, 1164
TaqI	TCGA	7 cut(s)	370, 606, 967, 974, 1105, 1183, 1215
TatI	WGTACW	3 cut(s)	253, 771, 1327
TauI	GCSGC	1 cut(s)	1631
TfiI	GAWTC	3 cut(s)	445, 1180, 1185
TscAI	CASTG	5 cut(s)	24, 213, 565, 1090, 1287
TseFI	GTSAC	3 cut(s)	1081, 1278, 1317
TseI	GCWGC	3 cut(s)	158, 590, 1346
Tsp45I	GTSAC	3 cut(s)	1081, 1278, 1317
TspGWI	ACGGA	1 cut(s)	1235
TspRI	CASTG	5 cut(s)	24, 213, 565, 1090, 1287
Van91I	CCANNNNNTGG	1 cut(s)	1646
VpaK11BI	GGWCC	3 cut(s)	555, 735, 1595
XapI	RAATTY	3 cut(s)	521, 613, 667
XceI	RCATGY	1 cut(s)	951
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1419
XmaJI	CCTAGG	1 cut(s)	1489
XspI	CTAG	5 cut(s)	78, 297, 704, 1490, 1710
ZrmI	AGTACT	2 cut(s)	773, 1329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.