Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003100

Physical Location & Seq

Genomic Coordinates Forward (+)

2361460 .. 2362926

Gene Structure 1467 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026352

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGGCTTCATCGTCTGAGGAACCACCACAGCAGCCACAGTCAGTGAAGGACTGTCTTTACAAGACCAAGCTCATTCAATTCTTGGACCGCACTGCCCCTATCGTCCTCCAGAACGACAATGGCCCCTGCCCTCTCCTCGCCATCTGTAATGTTCTCTCCCTGAGAAACAACCTGAACTTGAGTGCAGACACTACAGAAGTCTCTCAAGAAAAGTTACTCACACTCGTTGCTGAAAGATTAATTGATTCTATTGATAATAAAGATGCTGTTGCCGATGCTATCGATCTACTCCCTCGCCTTGCAACCGGAATCAACGTCAACATAAAATTCACAAGGATAAGTGATTTTGAGTTTACTCCAGAACGTGCAATATTTGATCTGCTAGACATCCCACTATATCATGGCTGGATAGTTGATCCCGTGCTAAAAGATACTGCTAAAGCAATTGGGTCCAAGTCCTATAATACTCTTATGGGGGAGCTTGTTGCACTGGAAACACAAAATATGACTGCAACACTTGGTGTACCTTCCCCAAGCCTTTCTAAAACTAGATCTTTTGATGAGTCTCCACGTTCAGCTTCTTCTGATGAACCAAAGGTAATTAAAGCAGGAGACCGTGAAGAAGAAGCAGCGTTGTTAATGGCCTTACAGATGTCTATGGGTAAGCTTTCAACTTCAGGGGGTGATCCTGAATGCAATGGCCTTAAAGAGCAGGAGCTCTGTGTTTTCTTTCGAAACAACCACTTCAGTACCATGTTTAAGATCAATGGAGAACTTTATCTTTTGGCAACTGATCAGGGTTACCTGAATCAGCATGATTTGGTGTGGGAAAAGCTTAATGAGGTGAATGGAGATACATTGTTCATGACTGGCAATTTCAAGGAATTTAAAGTTGAAAACCAACCAAATGAAAATTGGACCACTACCGACTACCTTGCCAGCATTGACAGTGCAGCTTCAGCAGGCTTCGATATAAACTCCGATCTGCAAATGGCAATTGCTCTGCAACAACAGGACTATTGCAGCGGCAATTCAACAAAGCTTGACGATGGAGAAAAGAGTGGTCTAGTTCTGACGACTCCTCCAGTTCTTGAAGGGTCCAAGAAAAAAACTGTTCTTGTCAATTTCATGGAGTACTGTAGGGCTATGGTTAGGCAGCCGGATCATGTGATGAGTTTCATGCTTGCAGAATTGGACACGAGTGGATCACTTGATGAACAGCTGAGGTTAGTTGTGAAGGGAAGATTTTTGCCTAAGAAGTTCGGAGCAATCTTGCGGAAATATGTCAATGAATATGTGATGTGCTTCGCATGCAAACGTACAGACACTCGACTTTCGAAAGAAAATCAGCCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MINDY_DUB

Protein Analysis

453

Amino Acids

50.3

Weight (kDa)

4.93

Isoelectric Point (pI)

33.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MINDY_DUB	PF04424	20 - 293	3.7e-76	MINDY deubiquitinase
eIF-5_eIF-2B	PF01873	364 - 450	3.4e-26	Domain found in IF2B/IF5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07920
malus_domestica	MD03G1050000.v1.1 MD11G1052200.v1.1
prunus_persica	Prupe.6G039800_v2.0.a1
pyrus_communis	pycom03g03960 pycom11g04260
rosa_chinensis	RchiOBHm_Chr1g0379851 RchiOBHm_Chr1g0379891
rosa_laevigata	RLG00000026352 RLG00000026354
rosa_multiflora	Rmu_co8429969.1_g000001 Rmu_sc0004184.1_g000024 Rmu_sc0004184.1_g000025 Rmu_sc0004184.1_g000026 Rmu_sc0014259.1_g000013
rosa_roxburghii	Rroxscaffold_4G00279870 Rroxscaffold_4G00279880
rosa_rugosa	Rorug01G0415400 Rorug01G0415500 Rorug01G0415600
rosa_samantha	Rh1AG439500 Rh1AG439600 Rh1AG439700 Rh1BG395500 Rh1BG395600 Rh1BG395700 Rh1BG395800 Rh1CG408700 Rh1CG408800 Rh1CG408900 Rh1CG409400 Rh1DG426400 Rh1DG426500 Rh1DG426600 Rh1DG426700
rosa_wichuraiana	Rw1G038260 Rw1G038270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	88, 1026, 1276
AclWI	GGATC	4 cut(s)	410, 680, 1170, 1213
AcsI	RAATTY	2 cut(s)	326, 884
AcuI	CTGAAG	3 cut(s)	660, 730, 942
AdeI	CACNNNGTG	1 cut(s)	521
AfaI	GTAC	4 cut(s)	525, 751, 1136, 1321
AgsI	TTSAA	6 cut(s)	77, 672, 880, 896, 1035, 1094
AluBI	AGCT	9 cut(s)	70, 481, 578, 667, 718, 835, 956, 1042, 1222
AluI	AGCT	9 cut(s)	70, 481, 578, 667, 718, 835, 956, 1042, 1222
Alw21I	GWGCWC	1 cut(s)	720
Alw26I	GTCTC	3 cut(s)	205, 570, 606
AlwI	GGATC	4 cut(s)	410, 680, 1170, 1213
AoxI	GGCC	3 cut(s)	121, 642, 700
ApeKI	GCWGC	5 cut(s)	31, 629, 953, 1023, 1156
ApoI	RAATTY	2 cut(s)	326, 884
AseI	ATTAAT	1 cut(s)	239
AspS9I	GGNCC	5 cut(s)	85, 122, 450, 918, 1098
AsuHPI	GGTGA	2 cut(s)	695, 856
AsuII	TTCGAA	2 cut(s)	733, 1337
AvaII	GGWCC	4 cut(s)	85, 450, 918, 1098
BaeI	ACNNNNGTAYC	2 cut(s)	733, 766
BanII	GRGCYC	1 cut(s)	720
BauI	CACGAG	1 cut(s)	1198
Bbv12I	GWGCWC	1 cut(s)	720
BbvCI	CCTCAGC	1 cut(s)	1223
BbvI	GCAGC	5 cut(s)	43, 641, 965, 1035, 1168
BccI	CCATC	2 cut(s)	149, 1043
BcgI	CGANNNNNNTGC	2 cut(s)	917, 951
BclI	TGATCA	1 cut(s)	793
BcoDI	GTCTC	3 cut(s)	205, 570, 606
BfaI	CTAG	3 cut(s)	383, 549, 1067
BfmI	CTRYAG	2 cut(s)	192, 1138
BglII	AGATCT	1 cut(s)	551
BisI	GCNGC	6 cut(s)	32, 630, 954, 1024, 1027, 1157
BlsI	GCNGC	6 cut(s)	33, 631, 955, 1025, 1028, 1158
BmcAI	AGTACT	1 cut(s)	1136
Bme18I	GGWCC	4 cut(s)	85, 450, 918, 1098
BmgT120I	GGNCC	5 cut(s)	85, 122, 450, 918, 1098
BmiI	GGNNCC	4 cut(s)	21, 124, 451, 1099
BmsI	GCATC	2 cut(s)	253, 265
BpmI	CTGGAG	3 cut(s)	92, 342, 1068
Bpu10I	CCTNAGC	1 cut(s)	1223
Bpu14I	TTCGAA	2 cut(s)	733, 1337
BpuEI	CTTGAG	2 cut(s)	189, 199
Bsa29I	ATCGAT	1 cut(s)	282
BsaI	GGTCTC	1 cut(s)	606
BsaWI	WCCGGW	1 cut(s)	305
BsaXI	ACNNNNNCTCC	2 cut(s)	1066, 1096
Bse1I	ACTGG	3 cut(s)	495, 874, 1085
Bse3DI	GCAATG	1 cut(s)	703
BseCI	ATCGAT	1 cut(s)	282
BseGI	GGATG	1 cut(s)	387
BseMI	GCAATG	1 cut(s)	703
BseMII	CTCAG	3 cut(s)	6, 152, 1214
BseNI	ACTGG	3 cut(s)	495, 874, 1085
BseRI	GAGGAG	2 cut(s)	125, 1071
BseXI	GCAGC	5 cut(s)	43, 641, 965, 1035, 1168
BsgI	GTGCAG	2 cut(s)	204, 972
BshFI	GGCC	3 cut(s)	123, 644, 702
BshVI	ATCGAT	1 cut(s)	282
BsiHKAI	GWGCWC	1 cut(s)	720
BsiSI	CCGG	2 cut(s)	306, 1160
BsmAI	GTCTC	3 cut(s)	205, 570, 606
BsmI	GAATGC	1 cut(s)	698
BsnI	GGCC	3 cut(s)	123, 644, 702
Bso31I	GGTCTC	1 cut(s)	606
Bsp119I	TTCGAA	2 cut(s)	733, 1337
Bsp1286I	GDGCHC	1 cut(s)	720
BspACI	CCGC	3 cut(s)	88, 1026, 1276
BspANI	GGCC	3 cut(s)	123, 644, 702
BspCNI	CTCAG	3 cut(s)	7, 153, 1215
BspDI	ATCGAT	1 cut(s)	282
BspHI	TCATGA	1 cut(s)	864
BspLI	GGNNCC	4 cut(s)	21, 124, 451, 1099
BspPI	GGATC	4 cut(s)	410, 680, 1170, 1213
BspT104I	TTCGAA	2 cut(s)	733, 1337
BspTNI	GGTCTC	1 cut(s)	606
BsrDI	GCAATG	1 cut(s)	703
BsrI	ACTGG	3 cut(s)	495, 874, 1085
BssSI	CACGAG	1 cut(s)	1198
Bst2BI	CACGAG	1 cut(s)	1198
Bst4CI	ACNGT	6 cut(s)	39, 53, 617, 950, 1114, 1139
BstBI	TTCGAA	2 cut(s)	733, 1337
BstC8I	GCNNGC	4 cut(s)	940, 964, 1185, 1312
BstDEI	CTNAG	4 cut(s)	15, 161, 1223, 1254
BstEII	GGTNACC	1 cut(s)	800
BstF5I	GGATG	1 cut(s)	387
BstMAI	GTCTC	3 cut(s)	205, 570, 606
BstMWI	GCNNNNNNNGC	2 cut(s)	959, 1311
BstNSI	RCATGY	1 cut(s)	1314
BstPI	GGTNACC	1 cut(s)	800
BstSFI	CTRYAG	2 cut(s)	192, 1138
BstV1I	GCAGC	5 cut(s)	43, 641, 965, 1035, 1168
BstX2I	RGATCY	1 cut(s)	551
BstYI	RGATCY	1 cut(s)	551
Bsu15I	ATCGAT	1 cut(s)	282
BsuRI	GGCC	3 cut(s)	123, 644, 702
BsuTUI	ATCGAT	1 cut(s)	282
BtsCI	GGATG	1 cut(s)	387
BtsI	GCAGTG	1 cut(s)	90
BtsIMutI	CAGTG	4 cut(s)	48, 90, 488, 955
Cac8I	GCNNGC	4 cut(s)	940, 964, 1185, 1312
CciI	TCATGA	1 cut(s)	864
Cfr13I	GGNCC	5 cut(s)	85, 122, 450, 918, 1098
ClaI	ATCGAT	1 cut(s)	282
Csp6I	GTAC	4 cut(s)	524, 750, 1135, 1320
CviAII	CATG	8 cut(s)	401, 754, 815, 865, 1129, 1166, 1180, 1311
CviQI	GTAC	4 cut(s)	524, 750, 1135, 1320
DdeI	CTNAG	4 cut(s)	15, 161, 1223, 1254
DraI	TTTAAA	1 cut(s)	889
DraIII	CACNNNGTG	1 cut(s)	521
Ecl136II	GAGCTC	1 cut(s)	718
Eco24I	GRGCYC	1 cut(s)	720
Eco31I	GGTCTC	1 cut(s)	606
Eco47I	GGWCC	4 cut(s)	85, 450, 918, 1098
Eco53kI	GAGCTC	1 cut(s)	718
Eco57I	CTGAAG	3 cut(s)	660, 730, 942
Eco91I	GGTNACC	1 cut(s)	800
EcoICRI	GAGCTC	1 cut(s)	718
EcoO65I	GGTNACC	1 cut(s)	800
EcoT38I	GRGCYC	1 cut(s)	720
FaeI	CATG	8 cut(s)	404, 757, 818, 868, 1132, 1169, 1183, 1314
FatI	CATG	8 cut(s)	400, 753, 814, 864, 1128, 1165, 1179, 1310
FbaI	TGATCA	1 cut(s)	793
Fnu4HI	GCNGC	6 cut(s)	32, 630, 954, 1024, 1027, 1157
FokI	GGATG	1 cut(s)	374
FriOI	GRGCYC	1 cut(s)	720
Fsp4HI	GCNGC	6 cut(s)	32, 630, 954, 1024, 1027, 1157
FspBI	CTAG	3 cut(s)	383, 549, 1067
GluI	GCNGC	6 cut(s)	32, 630, 954, 1024, 1027, 1157
GsuI	CTGGAG	3 cut(s)	92, 342, 1068
HaeIII	GGCC	3 cut(s)	123, 644, 702
HapII	CCGG	2 cut(s)	306, 1160
Hin1II	CATG	8 cut(s)	404, 757, 818, 868, 1132, 1169, 1183, 1314
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HindIII	AAGCTT	3 cut(s)	665, 833, 1040
HinfI	GANTC	5 cut(s)	245, 309, 563, 808, 1078
HpaII	CCGG	2 cut(s)	306, 1160
HphI	GGTGA	2 cut(s)	695, 856
Hpy166II	GTNNAC	3 cut(s)	319, 354, 524
Hpy188I	TCNGA	5 cut(s)	16, 586, 982, 1074, 1265
Hpy188III	TCNNGA	6 cut(s)	109, 206, 359, 689, 865, 1091
Hpy8I	GTNNAC	3 cut(s)	319, 354, 524
HpyAV	CCTTC	4 cut(s)	40, 537, 1088, 1231
HpyCH4III	ACNGT	6 cut(s)	39, 53, 617, 950, 1114, 1139
HpyCH4IV	ACGT	4 cut(s)	315, 364, 571, 1318
HpyF10VI	GCNNNNNNNGC	2 cut(s)	959, 1311
HpyF3I	CTNAG	4 cut(s)	15, 161, 1223, 1254
HpySE526I	ACGT	4 cut(s)	315, 364, 571, 1318
Hsp92II	CATG	8 cut(s)	404, 757, 818, 868, 1132, 1169, 1183, 1314
Ksp22I	TGATCA	1 cut(s)	793
LmnI	GCTCC	3 cut(s)	478, 715, 1265
Lsp1109I	GCAGC	5 cut(s)	43, 641, 965, 1035, 1168
LweI	GCATC	2 cut(s)	253, 265
MaeI	CTAG	3 cut(s)	383, 549, 1067
MaeII	ACGT	4 cut(s)	315, 364, 571, 1318
MaeIII	GTNAC	2 cut(s)	213, 800
MboII	GAAGA	4 cut(s)	573, 632, 635, 1254
MfeI	CAATTG	2 cut(s)	444, 996
MflI	RGATCY	1 cut(s)	551
MhlI	GDGCHC	1 cut(s)	720
MlyI	GAGTC	2 cut(s)	572, 1072
MnlI	CCTC	8 cut(s)	10, 116, 141, 146, 303, 835, 1092, 1218
MseI	TTAA	7 cut(s)	239, 603, 638, 705, 759, 837, 888
MspA1I	CMGCKG	2 cut(s)	1026, 1222
MspI	CCGG	2 cut(s)	306, 1160
MunI	CAATTG	2 cut(s)	444, 996
Mva1269I	GAATGC	1 cut(s)	698
MwoI	GCNNNNNNNGC	2 cut(s)	959, 1311
NlaIII	CATG	8 cut(s)	404, 757, 818, 868, 1132, 1169, 1183, 1314
NlaIV	GGNNCC	4 cut(s)	21, 124, 451, 1099
NspI	RCATGY	1 cut(s)	1314
NspV	TTCGAA	2 cut(s)	733, 1337
PaeI	GCATGC	1 cut(s)	1314
PagI	TCATGA	1 cut(s)	864
PctI	GAATGC	1 cut(s)	698
PfeI	GAWTC	3 cut(s)	245, 309, 808
PkrI	GCNGC	6 cut(s)	33, 631, 955, 1025, 1028, 1158
PleI	GAGTC	2 cut(s)	571, 1072
PpsI	GAGTC	2 cut(s)	571, 1072
PshBI	ATTAAT	1 cut(s)	239
Psp124BI	GAGCTC	1 cut(s)	720
PspEI	GGTNACC	1 cut(s)	800
PspN4I	GGNNCC	4 cut(s)	21, 124, 451, 1099
PspPI	GGNCC	5 cut(s)	85, 122, 450, 918, 1098
PsuI	RGATCY	1 cut(s)	551
PvuII	CAGCTG	1 cut(s)	1222
RsaI	GTAC	4 cut(s)	525, 751, 1136, 1321
RsaNI	GTAC	4 cut(s)	524, 750, 1135, 1320
SacI	GAGCTC	1 cut(s)	720
SaqAI	TTAA	7 cut(s)	239, 603, 638, 705, 759, 837, 888
SatI	GCNGC	6 cut(s)	32, 630, 954, 1024, 1027, 1157
Sau96I	GGNCC	5 cut(s)	85, 122, 450, 918, 1098
ScaI	AGTACT	1 cut(s)	1136
SchI	GAGTC	2 cut(s)	572, 1072
SduI	GDGCHC	1 cut(s)	720
SfaNI	GCATC	2 cut(s)	253, 265
SfcI	CTRYAG	2 cut(s)	192, 1138
SfuI	TTCGAA	2 cut(s)	733, 1337
SinI	GGWCC	4 cut(s)	85, 450, 918, 1098
SmlI	CTYRAG	2 cut(s)	178, 204
SmoI	CTYRAG	2 cut(s)	178, 204
SphI	GCATGC	1 cut(s)	1314
SsiI	CCGC	3 cut(s)	88, 1026, 1276
SspI	AATATT	1 cut(s)	372
SspMI	CTAG	3 cut(s)	383, 549, 1067
SstI	GAGCTC	1 cut(s)	720
TaaI	ACNGT	6 cut(s)	39, 53, 617, 950, 1114, 1139
TaiI	ACGT	4 cut(s)	318, 367, 574, 1321
TaqI	TCGA	5 cut(s)	282, 733, 969, 1330, 1337
TatI	WGTACW	1 cut(s)	1134
TauI	GCSGC	1 cut(s)	1029
TfiI	GAWTC	3 cut(s)	245, 309, 808
Tru1I	TTAA	7 cut(s)	239, 603, 638, 705, 759, 837, 888
Tru9I	TTAA	7 cut(s)	239, 603, 638, 705, 759, 837, 888
TscAI	CASTG	4 cut(s)	48, 97, 495, 955
TseI	GCWGC	5 cut(s)	31, 629, 953, 1023, 1156
TspDTI	ATGAA	7 cut(s)	603, 853, 924, 1117, 1168, 1230, 1305
TspRI	CASTG	4 cut(s)	48, 97, 495, 955
VpaK11BI	GGWCC	4 cut(s)	85, 450, 918, 1098
VspI	ATTAAT	1 cut(s)	239
XapI	RAATTY	2 cut(s)	326, 884
XceI	RCATGY	1 cut(s)	1314
XcmI	CCANNNNNNNNNTGG	2 cut(s)	116, 912
XspI	CTAG	3 cut(s)	383, 549, 1067
ZrmI	AGTACT	1 cut(s)	1136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.