Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004184.1

Orthogroup ID

OG0003100

Physical Location & Seq

Genomic Coordinates Forward (+)

112912 .. 113643

Gene Structure 732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004184.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

atggcagcattgagagagttttgttcaagatcaaacatggaagacaaccacaatctgagagagctttgtttcagatcaaacatgggggaaaacaatctgaatgataagaaggataaggtggctcaggctgcagccaccttcgatcctacaaaaaagaagaaaaagaagaaggcaattgcgattgaggaatcgagtactagtactgatgattcctccatgaacagctcggctttagagaagacaaaaactggcgaggctgactacgaatatgaagaacttcttgataggttgctgatgaagcttcgtgacgacaatccgaagcttgcggatggagaaaagtgtggtctagttctgagtcctcctcaagttcttcgtgaagggtcaaaaaaaactgttcttgtcaatttcatggagtactgtaggactatggttaggcagccggatcatgtaatgagtttcatgcttgctgaattggggacgagtggatcgcttgatggacagctgagattagttgtgaagggaagattttcgcctaagaatttcggagcaatcttgcgaaaatatgccaatcaatatgtgatttgcttcgcgtgcaaacgtccagacactcgactttcaaaagaaaatcggctcaactatcttagatgcgagaggtgttgtgcttcacgatcagttgctcctattgaagctggttttcttgccaaagttggaaaaaggaacagtgcagcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

eIF-5_eIF-2B

Protein Analysis

243

Amino Acids

27.33

Weight (kDa)

9.23

Isoelectric Point (pI)

42.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07920
malus_domestica	MD03G1050000.v1.1 MD11G1052200.v1.1
prunus_persica	Prupe.6G039800_v2.0.a1
pyrus_communis	pycom03g03960 pycom11g04260
rosa_chinensis	RchiOBHm_Chr1g0379851 RchiOBHm_Chr1g0379891
rosa_laevigata	RLG00000026352 RLG00000026354
rosa_multiflora	Rmu_co8429969.1_g000001 Rmu_sc0004184.1_g000024 Rmu_sc0004184.1_g000025 Rmu_sc0004184.1_g000026 Rmu_sc0014259.1_g000013
rosa_roxburghii	Rroxscaffold_4G00279870 Rroxscaffold_4G00279880
rosa_rugosa	Rorug01G0415400 Rorug01G0415500 Rorug01G0415600
rosa_samantha	Rh1AG439500 Rh1AG439600 Rh1AG439700 Rh1BG395500 Rh1BG395600 Rh1BG395700 Rh1BG395800 Rh1CG408700 Rh1CG408800 Rh1CG408900 Rh1CG409400 Rh1DG426400 Rh1DG426500 Rh1DG426600 Rh1DG426700
rosa_wichuraiana	Rw1G038260 Rw1G038270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	590
AciI	CCGC	1 cut(s)	326
AclWI	GGATC	3 cut(s)	137, 450, 493
AcsI	RAATTY	1 cut(s)	538
AfaI	GTAC	3 cut(s)	196, 202, 416
AgsI	TTSAA	3 cut(s)	27, 618, 686
AhlI	ACTAGT	1 cut(s)	197
AluBI	AGCT	6 cut(s)	64, 225, 301, 322, 502, 689
AluI	AGCT	6 cut(s)	64, 225, 301, 322, 502, 689
AlwI	GGATC	3 cut(s)	137, 450, 493
ApeKI	GCWGC	5 cut(s)	5, 128, 131, 436, 725
ApoI	RAATTY	1 cut(s)	538
Asp700I	GAANNNNTTC	2 cut(s)	276, 526
BbsI	GAAGAC	2 cut(s)	48, 245
BbvI	GCAGC	4 cut(s)	17, 115, 143, 448
BccI	CCATC	2 cut(s)	323, 488
BcuI	ACTAGT	1 cut(s)	197
BfaI	CTAG	2 cut(s)	198, 347
BfmI	CTRYAG	2 cut(s)	129, 418
BisI	GCNGC	5 cut(s)	6, 129, 132, 437, 726
BlsI	GCNGC	5 cut(s)	7, 130, 133, 438, 727
BmcAI	AGTACT	3 cut(s)	196, 202, 416
BmsI	GCATC	1 cut(s)	635
BpiI	GAAGAC	2 cut(s)	48, 245
BplI	GAGNNNNNCTC	2 cut(s)	346, 378
Bpu10I	CCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	348
Bse1I	ACTGG	1 cut(s)	253
BseGI	GGATG	1 cut(s)	334
BseMII	CTCAG	4 cut(s)	47, 137, 344, 494
BseNI	ACTGG	1 cut(s)	253
BseRI	GAGGAG	1 cut(s)	351
BseXI	GCAGC	4 cut(s)	17, 115, 143, 448
Bsh1236I	CGCG	1 cut(s)	590
BsiSI	CCGG	1 cut(s)	440
BslFI	GGGAC	1 cut(s)	490
BsmFI	GGGAC	1 cut(s)	490
Bsp143I	GATC	6 cut(s)	29, 74, 142, 442, 485, 668
BspACI	CCGC	1 cut(s)	326
BspCNI	CTCAG	4 cut(s)	48, 136, 345, 495
BspFNI	CGCG	1 cut(s)	590
BspMAI	CTGCAG	1 cut(s)	133
BspPI	GGATC	3 cut(s)	137, 450, 493
BsrI	ACTGG	1 cut(s)	253
BssMI	GATC	6 cut(s)	29, 74, 142, 442, 485, 668
Bst4CI	ACNGT	3 cut(s)	394, 419, 722
BstC8I	GCNNGC	3 cut(s)	324, 465, 592
BstDEI	CTNAG	6 cut(s)	56, 123, 353, 503, 534, 641
BstF5I	GGATG	1 cut(s)	334
BstFNI	CGCG	1 cut(s)	590
BstKTI	GATC	6 cut(s)	32, 77, 145, 445, 488, 671
BstMBI	GATC	6 cut(s)	29, 74, 142, 442, 485, 668
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 298, 591
BstSFI	CTRYAG	2 cut(s)	129, 418
BstUI	CGCG	1 cut(s)	590
BstV1I	GCAGC	4 cut(s)	17, 115, 143, 448
BstV2I	GAAGAC	2 cut(s)	48, 245
BtsCI	GGATG	1 cut(s)	334
BtsIMutI	CAGTG	1 cut(s)	727
Cac8I	GCNNGC	3 cut(s)	324, 465, 592
Csp6I	GTAC	3 cut(s)	195, 201, 415
CviAII	CATG	7 cut(s)	37, 82, 217, 409, 446, 460, 729
CviQI	GTAC	3 cut(s)	195, 201, 415
DdeI	CTNAG	6 cut(s)	56, 123, 353, 503, 534, 641
DpnI	GATC	6 cut(s)	31, 76, 144, 444, 487, 670
DpnII	GATC	6 cut(s)	29, 74, 142, 442, 485, 668
FaeI	CATG	7 cut(s)	40, 85, 220, 412, 449, 463, 732
FalI	AAGNNNNNCTT	2 cut(s)	264, 296
FaqI	GGGAC	1 cut(s)	490
FatI	CATG	7 cut(s)	36, 81, 216, 408, 445, 459, 728
Fnu4HI	GCNGC	5 cut(s)	6, 129, 132, 437, 726
FokI	GGATG	1 cut(s)	341
Fsp4HI	GCNGC	5 cut(s)	6, 129, 132, 437, 726
FspBI	CTAG	2 cut(s)	198, 347
GluI	GCNGC	5 cut(s)	6, 129, 132, 437, 726
HapII	CCGG	1 cut(s)	440
Hin1II	CATG	7 cut(s)	40, 85, 220, 412, 449, 463, 732
HindIII	AAGCTT	2 cut(s)	299, 320
HinfI	GANTC	3 cut(s)	188, 209, 355
HpaII	CCGG	1 cut(s)	440
Hpy188I	TCNGA	6 cut(s)	57, 74, 99, 318, 354, 545
Hpy188III	TCNNGA	6 cut(s)	27, 281, 305, 374, 602, 666
HpyAV	CCTTC	5 cut(s)	103, 148, 163, 371, 511
HpyCH4III	ACNGT	3 cut(s)	394, 419, 722
HpyCH4IV	ACGT	1 cut(s)	598
HpyCH4V	TGCA	3 cut(s)	131, 594, 725
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 298, 591
HpyF3I	CTNAG	6 cut(s)	56, 123, 353, 503, 534, 641
HpySE526I	ACGT	1 cut(s)	598
Hsp92II	CATG	7 cut(s)	40, 85, 220, 412, 449, 463, 732
Kzo9I	GATC	6 cut(s)	29, 74, 142, 442, 485, 668
LmnI	GCTCC	2 cut(s)	545, 682
LpnPI	CCDG	5 cut(s)	110, 234, 453, 615, 675
Lsp1109I	GCAGC	4 cut(s)	17, 115, 143, 448
LweI	GCATC	1 cut(s)	635
MaeI	CTAG	2 cut(s)	198, 347
MaeII	ACGT	1 cut(s)	598
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	6 cut(s)	31, 76, 144, 444, 487, 670
MboI	GATC	6 cut(s)	29, 74, 142, 442, 485, 668
MboII	GAAGA	7 cut(s)	53, 169, 178, 250, 284, 362, 534
MfeI	CAATTG	1 cut(s)	174
MluCI	AATT	4 cut(s)	174, 403, 470, 538
MlyI	GAGTC	1 cut(s)	364
MmeI	TCCRAC	1 cut(s)	688
MnlI	CCTC	6 cut(s)	178, 223, 247, 369, 372, 645
MroXI	GAANNNNTTC	2 cut(s)	276, 526
MspA1I	CMGCKG	1 cut(s)	502
MspI	CCGG	1 cut(s)	440
MunI	CAATTG	1 cut(s)	174
MvnI	CGCG	1 cut(s)	590
MwoI	GCNNNNNNNGC	3 cut(s)	128, 298, 591
NdeII	GATC	6 cut(s)	29, 74, 142, 442, 485, 668
NlaIII	CATG	7 cut(s)	40, 85, 220, 412, 449, 463, 732
NmeAIII	GCCGAG	1 cut(s)	206
NmuCI	GTSAC	1 cut(s)	305
PdmI	GAANNNNTTC	2 cut(s)	276, 526
PfeI	GAWTC	2 cut(s)	188, 209
PkrI	GCNGC	5 cut(s)	7, 130, 133, 438, 727
PleI	GAGTC	1 cut(s)	363
PpsI	GAGTC	1 cut(s)	363
PstI	CTGCAG	1 cut(s)	133
PvuII	CAGCTG	1 cut(s)	502
RsaI	GTAC	3 cut(s)	196, 202, 416
RsaNI	GTAC	3 cut(s)	195, 201, 415
SatI	GCNGC	5 cut(s)	6, 129, 132, 437, 726
Sau3AI	GATC	6 cut(s)	29, 74, 142, 442, 485, 668
ScaI	AGTACT	3 cut(s)	196, 202, 416
SchI	GAGTC	1 cut(s)	364
SfaNI	GCATC	1 cut(s)	635
SfcI	CTRYAG	2 cut(s)	129, 418
SmlI	CTYRAG	1 cut(s)	363
SmoI	CTYRAG	1 cut(s)	363
SpeI	ACTAGT	1 cut(s)	197
Sse9I	AATT	4 cut(s)	174, 403, 470, 538
SsiI	CCGC	1 cut(s)	326
SspMI	CTAG	2 cut(s)	198, 347
TaaI	ACNGT	3 cut(s)	394, 419, 722
TaiI	ACGT	1 cut(s)	601
TaqI	TCGA	3 cut(s)	141, 191, 610
TasI	AATT	4 cut(s)	174, 403, 470, 538
TatI	WGTACW	3 cut(s)	194, 200, 414
TfiI	GAWTC	2 cut(s)	188, 209
TscAI	CASTG	1 cut(s)	727
TseFI	GTSAC	1 cut(s)	305
TseI	GCWGC	5 cut(s)	5, 128, 131, 436, 725
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	5 cut(s)	233, 285, 311, 397, 448
TspRI	CASTG	1 cut(s)	727
XapI	RAATTY	1 cut(s)	538
XmnI	GAANNNNTTC	2 cut(s)	276, 526
XspI	CTAG	2 cut(s)	198, 347
ZrmI	AGTACT	3 cut(s)	196, 202, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.