Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003100

Physical Location & Seq

Genomic Coordinates Reverse (-)

66229335 .. 66230279

Gene Structure 945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG439600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGTCACATTGATGATGGTGCATGCTTGTGTGAAACGGTTAACTGAGACCTATACGAGTCTGTACAGAGTTTCACGTGAGATGCTTGGAACCTATAGTATTGTTCGTGGTAATCTTGTTGGGGATGACCATCCTATGCTTGCAGTGGCTGACGTGTCGTTGTCTCTTATATGTAGCATTCCTACCTCAATTGCTTTGATAGCTGATGAACCCGTAATTCAACTTGAAGTTATAAGAACAGCAATCCAGGCTGACCGTAGTTCAGGGAGAATTCGTGTCACTCCCATTACTGTGGCAAATGAGCGCACCATTAGATTAGCTGCAGTTGGCATTACTAGTAATGGAGAAGCTTTTGCAAACTCATCATCTCTTCATTTGCAGTGGGAACTTAGCAGTTGTGATGGGATGGCCTATTGGAATGATGCTGATAATTTACAGAGATCAAAGTACAGTTGGGAAAAAATTTTGAGCCTGCAAAATGTGTCGCGCCTGTTTATTGCTCGTGATACTGTTATTGGTTTCCACAATACCATGGTCAACATAATACTATACCATTGCTTGAGAGTTCAGAGAATGAGTGCCTATAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0012505 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Big_2 RRM_1

Protein Analysis

196

Amino Acids

21.94

Weight (kDa)

8.39

Isoelectric Point (pI)

34.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07920
malus_domestica	MD03G1050000.v1.1 MD11G1052200.v1.1
prunus_persica	Prupe.6G039800_v2.0.a1
pyrus_communis	pycom03g03960 pycom11g04260
rosa_chinensis	RchiOBHm_Chr1g0379851 RchiOBHm_Chr1g0379891
rosa_laevigata	RLG00000026352 RLG00000026354
rosa_multiflora	Rmu_co8429969.1_g000001 Rmu_sc0004184.1_g000024 Rmu_sc0004184.1_g000025 Rmu_sc0004184.1_g000026 Rmu_sc0014259.1_g000013
rosa_roxburghii	Rroxscaffold_4G00279870 Rroxscaffold_4G00279880
rosa_rugosa	Rorug01G0415400 Rorug01G0415500 Rorug01G0415600
rosa_samantha	Rh1AG439500 Rh1AG439600 Rh1AG439700 Rh1BG395500 Rh1BG395600 Rh1BG395700 Rh1BG395800 Rh1CG408700 Rh1CG408800 Rh1CG408900 Rh1CG409400 Rh1DG426400 Rh1DG426500 Rh1DG426600 Rh1DG426700
rosa_wichuraiana	Rw1G038260 Rw1G038270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	233
AccII	CGCG	1 cut(s)	487
AcsI	RAATTY	2 cut(s)	270, 462
AcvI	CACGTG	1 cut(s)	77
AfaI	GTAC	2 cut(s)	65, 449
AflIII	ACRYGT	1 cut(s)	153
AgsI	TTSAA	2 cut(s)	221, 227
AhlI	ACTAGT	1 cut(s)	335
AjiI	CACGTC	1 cut(s)	154
AjnI	CCWGG	1 cut(s)	246
AluBI	AGCT	3 cut(s)	203, 320, 350
AluI	AGCT	3 cut(s)	203, 320, 350
Alw26I	GTCTC	2 cut(s)	41, 168
AlwNI	CAGNNNCTG	1 cut(s)	149
AoxI	GGCC	1 cut(s)	408
ApeKI	GCWGC	1 cut(s)	320
ApoI	RAATTY	2 cut(s)	270, 462
AspLEI	GCGC	2 cut(s)	306, 489
BauI	CACGAG	1 cut(s)	501
BbrPI	CACGTG	1 cut(s)	77
BbvI	GCAGC	1 cut(s)	307
BccI	CCATC	4 cut(s)	10, 138, 395, 400
BciT130I	CCWGG	1 cut(s)	248
BcoDI	GTCTC	2 cut(s)	41, 168
BcuI	ACTAGT	1 cut(s)	335
BfaI	CTAG	1 cut(s)	336
BfmI	CTRYAG	2 cut(s)	94, 321
BisI	GCNGC	1 cut(s)	321
BlsI	GCNGC	1 cut(s)	322
Bme1390I	CCNGG	1 cut(s)	248
BmgBI	CACGTC	1 cut(s)	154
BmiI	GGNNCC	1 cut(s)	91
BmrFI	CCNGG	1 cut(s)	248
BmsI	GCATC	2 cut(s)	72, 412
BpuEI	CTTGAG	1 cut(s)	580
BsaAI	YACGTR	1 cut(s)	77
BsaBI	GATNNNNATC	1 cut(s)	129
BsaI	GGTCTC	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	531
BsaXI	ACNNNNNCTCC	2 cut(s)	259, 289
Bse3DI	GCAATG	1 cut(s)	553
Bse8I	GATNNNNATC	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	248
BseDI	CCNNGG	1 cut(s)	531
BseGI	GGATG	3 cut(s)	130, 130, 411
BseJI	GATNNNNATC	1 cut(s)	129
BseMI	GCAATG	1 cut(s)	553
BseMII	CTCAG	1 cut(s)	36
BseXI	GCAGC	1 cut(s)	307
Bsh1236I	CGCG	1 cut(s)	487
BshFI	GGCC	1 cut(s)	410
BsmAI	GTCTC	2 cut(s)	41, 168
BsmI	GAATGC	1 cut(s)	177
BsnI	GGCC	1 cut(s)	410
Bso31I	GGTCTC	1 cut(s)	41
Bsp1407I	TGTACA	1 cut(s)	63
Bsp143I	GATC	1 cut(s)	440
Bsp19I	CCATGG	1 cut(s)	531
BspANI	GGCC	1 cut(s)	410
BspCNI	CTCAG	1 cut(s)	37
BspFNI	CGCG	1 cut(s)	487
BspLI	GGNNCC	1 cut(s)	91
BspMAI	CTGCAG	1 cut(s)	325
BspTNI	GGTCTC	1 cut(s)	41
BsrDI	GCAATG	1 cut(s)	553
BsrGI	TGTACA	1 cut(s)	63
BssECI	CCNNGG	1 cut(s)	531
BssMI	GATC	1 cut(s)	440
BssSI	CACGAG	1 cut(s)	501
BssT1I	CCWWGG	1 cut(s)	531
Bst2BI	CACGAG	1 cut(s)	501
Bst2UI	CCWGG	1 cut(s)	248
Bst4CI	ACNGT	5 cut(s)	39, 257, 292, 452, 511
Bst6I	CTCTTC	1 cut(s)	375
BstAUI	TGTACA	1 cut(s)	63
BstBAI	YACGTR	1 cut(s)	77
BstC8I	GCNNGC	3 cut(s)	24, 141, 473
BstDEI	CTNAG	2 cut(s)	45, 389
BstDSI	CCRYGG	1 cut(s)	531
BstF5I	GGATG	3 cut(s)	130, 130, 411
BstFNI	CGCG	1 cut(s)	487
BstHHI	GCGC	2 cut(s)	306, 489
BstKTI	GATC	1 cut(s)	443
BstMAI	GTCTC	2 cut(s)	41, 168
BstMBI	GATC	1 cut(s)	440
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 248
BstNI	CCWGG	1 cut(s)	248
BstNSI	RCATGY	1 cut(s)	26
BstSCI	CCNGG	1 cut(s)	246
BstSFI	CTRYAG	2 cut(s)	94, 321
BstUI	CGCG	1 cut(s)	487
BstV1I	GCAGC	1 cut(s)	307
BstXI	CCANNNNNNTGG	1 cut(s)	292
BsuRI	GGCC	1 cut(s)	410
BtgI	CCRYGG	1 cut(s)	531
BtrI	CACGTC	1 cut(s)	154
BtsCI	GGATG	3 cut(s)	130, 130, 411
BtsI	GCAGTG	2 cut(s)	150, 386
BtsIMutI	CAGTG	2 cut(s)	150, 386
Cac8I	GCNNGC	3 cut(s)	24, 141, 473
CaiI	CAGNNNCTG	1 cut(s)	149
CfoI	GCGC	2 cut(s)	306, 489
Csp6I	GTAC	2 cut(s)	64, 448
CviAII	CATG	2 cut(s)	23, 532
CviJI	RGCY	7 cut(s)	149, 203, 251, 320, 350, 410, 471
CviKI_1	RGCY	7 cut(s)	149, 203, 251, 320, 350, 410, 471
CviQI	GTAC	2 cut(s)	64, 448
DdeI	CTNAG	2 cut(s)	45, 389
DpnI	GATC	1 cut(s)	442
DpnII	GATC	1 cut(s)	440
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
Eco130I	CCWWGG	1 cut(s)	531
Eco31I	GGTCTC	1 cut(s)	41
Eco72I	CACGTG	1 cut(s)	77
EcoRI	GAATTC	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	246
EcoT14I	CCWWGG	1 cut(s)	531
ErhI	CCWWGG	1 cut(s)	531
FaeI	CATG	2 cut(s)	26, 535
FatI	CATG	2 cut(s)	22, 531
Fnu4HI	GCNGC	1 cut(s)	321
FokI	GGATG	3 cut(s)	117, 137, 418
Fsp4HI	GCNGC	1 cut(s)	321
FspBI	CTAG	1 cut(s)	336
GlaI	GCGC	2 cut(s)	305, 488
GluI	GCNGC	1 cut(s)	321
HaeIII	GGCC	1 cut(s)	410
HhaI	GCGC	2 cut(s)	306, 489
Hin1II	CATG	2 cut(s)	26, 535
Hin6I	GCGC	2 cut(s)	304, 487
HinP1I	GCGC	2 cut(s)	304, 487
HincII	GTYRAC	2 cut(s)	42, 538
HindII	GTYRAC	2 cut(s)	42, 538
HindIII	AAGCTT	1 cut(s)	348
HinfI	GANTC	1 cut(s)	58
HpaI	GTTAAC	1 cut(s)	42
Hpy166II	GTNNAC	2 cut(s)	42, 538
Hpy188I	TCNGA	1 cut(s)	570
Hpy188III	TCNNGA	1 cut(s)	503
Hpy8I	GTNNAC	2 cut(s)	42, 538
HpyCH4III	ACNGT	5 cut(s)	39, 257, 292, 452, 511
HpyCH4IV	ACGT	2 cut(s)	76, 153
HpyCH4V	TGCA	6 cut(s)	22, 143, 323, 356, 379, 475
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 248
HpyF3I	CTNAG	2 cut(s)	45, 389
HpySE526I	ACGT	2 cut(s)	76, 153
Hsp92II	CATG	2 cut(s)	26, 535
HspAI	GCGC	2 cut(s)	304, 487
KspAI	GTTAAC	1 cut(s)	42
Kzo9I	GATC	1 cut(s)	440
LpnPI	CCDG	5 cut(s)	233, 249, 260, 485, 503
Lsp1109I	GCAGC	1 cut(s)	307
LweI	GCATC	2 cut(s)	72, 412
MaeI	CTAG	1 cut(s)	336
MaeII	ACGT	2 cut(s)	76, 153
MaeIII	GTNAC	2 cut(s)	4, 277
MalI	GATC	1 cut(s)	442
MboI	GATC	1 cut(s)	440
MboII	GAAGA	1 cut(s)	362
MfeI	CAATTG	1 cut(s)	189
MluCI	AATT	5 cut(s)	189, 216, 270, 430, 462
MlyI	GAGTC	1 cut(s)	67
MnlI	CCTC	1 cut(s)	196
MseI	TTAA	1 cut(s)	41
MslI	CAYNNNNRTG	3 cut(s)	11, 27, 290
MspR9I	CCNGG	1 cut(s)	248
MunI	CAATTG	1 cut(s)	189
Mva1269I	GAATGC	1 cut(s)	177
MvaI	CCWGG	1 cut(s)	248
MvnI	CGCG	1 cut(s)	487
MwoI	GCNNNNNNNGC	2 cut(s)	200, 248
NcoI	CCATGG	1 cut(s)	531
NdeII	GATC	1 cut(s)	440
NlaIII	CATG	2 cut(s)	26, 535
NlaIV	GGNNCC	1 cut(s)	91
NmuCI	GTSAC	2 cut(s)	4, 277
NspI	RCATGY	1 cut(s)	26
PaeI	GCATGC	1 cut(s)	26
PctI	GAATGC	1 cut(s)	177
PkrI	GCNGC	1 cut(s)	322
PleI	GAGTC	1 cut(s)	66
PmaCI	CACGTG	1 cut(s)	77
PmlI	CACGTG	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	66
Ppu21I	YACGTR	1 cut(s)	77
PsiI	TTATAA	1 cut(s)	233
Psp6I	CCWGG	1 cut(s)	246
PspCI	CACGTG	1 cut(s)	77
PspGI	CCWGG	1 cut(s)	246
PspN4I	GGNNCC	1 cut(s)	91
PstI	CTGCAG	1 cut(s)	325
PstNI	CAGNNNCTG	1 cut(s)	149
RsaI	GTAC	2 cut(s)	65, 449
RsaNI	GTAC	2 cut(s)	64, 448
RseI	CAYNNNNRTG	3 cut(s)	11, 27, 290
SaqAI	TTAA	1 cut(s)	41
SatI	GCNGC	1 cut(s)	321
Sau3AI	GATC	1 cut(s)	440
SchI	GAGTC	1 cut(s)	67
ScrFI	CCNGG	1 cut(s)	248
SetI	ASST	8 cut(s)	53, 79, 95, 156, 188, 205, 322, 352
SfaNI	GCATC	2 cut(s)	72, 412
SfcI	CTRYAG	2 cut(s)	94, 321
SmiMI	CAYNNNNRTG	3 cut(s)	11, 27, 290
SmlI	CTYRAG	1 cut(s)	559
SmoI	CTYRAG	1 cut(s)	559
SpeI	ACTAGT	1 cut(s)	335
SphI	GCATGC	1 cut(s)	26
Sse9I	AATT	5 cut(s)	189, 216, 270, 430, 462
SspMI	CTAG	1 cut(s)	336
StyD4I	CCNGG	1 cut(s)	246
StyI	CCWWGG	1 cut(s)	531
TaaI	ACNGT	5 cut(s)	39, 257, 292, 452, 511
TaiI	ACGT	2 cut(s)	79, 156
TasI	AATT	5 cut(s)	189, 216, 270, 430, 462
TatI	WGTACW	2 cut(s)	63, 447
Tru1I	TTAA	1 cut(s)	41
Tru9I	TTAA	1 cut(s)	41
TscAI	CASTG	2 cut(s)	150, 386
TseFI	GTSAC	2 cut(s)	4, 277
TseI	GCWGC	1 cut(s)	320
Tsp45I	GTSAC	2 cut(s)	4, 277
TspDTI	ATGAA	2 cut(s)	222, 362
TspRI	CASTG	2 cut(s)	150, 386
XapI	RAATTY	2 cut(s)	270, 462
XceI	RCATGY	1 cut(s)	26
XspI	CTAG	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.