Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0003100

Physical Location & Seq

Genomic Coordinates Forward (+)

3305937 .. 3309619

Gene Structure 3683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g04260.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGAGAGCAGTAAAGAATACAAATAGAGGAAGAAAACACTCAGTCGCAGCCACACCCGCAGCGGAACAGGGAAACCAGCTCTCCGTTACATCAAACATTATGGCGGACGACAATCAGAATGAGGTGAAGGACGAGGTGGTAGCAGATATTGCTCCCTTTGATCCTACTAAAAAGAAGAAAAAGAAGAAGGTTGTTATTCAGGATACTACTGATGATTCTGTGGACAAGTTGGCCGAGAAAACGGAAACCTTGACAGTTTCTGAGGGGCAGGAGAGTACGTTTACTGGTTTGAAAAAGAAGAAGAAGAAGCCAGTTGAGACCAGTATCTTGAATGAAGAGAGTGGTGACCCAGTGGAAGATTTGAATGAGCGCACTGGTGAGGATGAGGAAGGAGAAGGGATTGTTCTAGAGACTCCATCATATCCTTGGGAAGGGAGTGATCGTGATTACACTTATGAAGAACTTCTTGATAGGGTGTTTAACATTCTTCGCGAAAATAACCCTGATCTGGCTGGAGACAGGCGTAGGACAGTGATGAGGCCTCCACAAGTTCTTCGTGAGGGCACAAAGAAAACGGTTTTTGTGAATTTCATGGATCTGTGCAAGACGATGCATAGGCAACCAGATCACGTCATGGCTTTCTTGCTTGCCGAACTGGGAACTAGTGGATCACTTGATGGACAGCAGAGGTTGGTTGTTAAGGGAAGATTTGCCCCAAAAAATTTCGAAGGAATACTGCGGCGATATGTCAATGAATATGTCATTTGCCTTGGGTGCAAAAGTCCAGACACTATACTTTCAAAGGAGAATCGTCTCTTCTTTCTCAGATGCGAGAAGTGTGGTTCTGGACGATCAGTTGCTCCGATTAAAGCTGGTTTTATGGCTCGGGTTGGGCGAAGGAACGCCGGGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

eIF-5_eIF-2B

Protein Analysis

305

Amino Acids

34.07

Weight (kDa)

8.16

Isoelectric Point (pI)

38.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07920
malus_domestica	MD03G1050000.v1.1 MD11G1052200.v1.1
prunus_persica	Prupe.6G039800_v2.0.a1
pyrus_communis	pycom03g03960 pycom11g04260
rosa_chinensis	RchiOBHm_Chr1g0379851 RchiOBHm_Chr1g0379891
rosa_laevigata	RLG00000026352 RLG00000026354
rosa_multiflora	Rmu_co8429969.1_g000001 Rmu_sc0004184.1_g000024 Rmu_sc0004184.1_g000025 Rmu_sc0004184.1_g000026 Rmu_sc0014259.1_g000013
rosa_roxburghii	Rroxscaffold_4G00279870 Rroxscaffold_4G00279880
rosa_rugosa	Rorug01G0415400 Rorug01G0415500 Rorug01G0415600
rosa_samantha	Rh1AG439500 Rh1AG439600 Rh1AG439700 Rh1BG395500 Rh1BG395600 Rh1BG395700 Rh1BG395800 Rh1CG408700 Rh1CG408800 Rh1CG408900 Rh1CG409400 Rh1DG426400 Rh1DG426500 Rh1DG426600 Rh1DG426700
rosa_wichuraiana	Rw1G038260 Rw1G038270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	492
AciI	CCGC	4 cut(s)	57, 62, 104, 739
AclWI	GGATC	3 cut(s)	155, 603, 676
AcoI	YGGCCR	1 cut(s)	231
AcsI	RAATTY	2 cut(s)	586, 721
AfaI	GTAC	1 cut(s)	277
AfiI	CCNNNNNNNGG	2 cut(s)	431, 508
AgsI	TTSAA	4 cut(s)	292, 331, 364, 801
AhlI	ACTAGT	1 cut(s)	662
AjiI	CACGTC	1 cut(s)	631
AluBI	AGCT	2 cut(s)	79, 872
AluI	AGCT	2 cut(s)	79, 872
Alw26I	GTCTC	4 cut(s)	311, 404, 510, 818
AlwI	GGATC	3 cut(s)	155, 603, 676
AlwNI	CAGNNNCTG	1 cut(s)	260
Ama87I	CYCGRG	1 cut(s)	885
AoxI	GGCC	2 cut(s)	231, 539
ApeKI	GCWGC	2 cut(s)	47, 59
ApoI	RAATTY	2 cut(s)	586, 721
Asp700I	GAANNNNTTC	1 cut(s)	462
AspLEI	GCGC	1 cut(s)	372
AsuC2I	CCSGG	1 cut(s)	907
AsuHPI	GGTGA	3 cut(s)	136, 356, 389
AsuII	TTCGAA	1 cut(s)	726
AvaI	CYCGRG	1 cut(s)	885
BaeGI	GKGCMC	1 cut(s)	566
BbvI	GCAGC	2 cut(s)	59, 71
BccI	CCATC	2 cut(s)	424, 671
BciVI	GTATCC	1 cut(s)	196
BcnI	CCSGG	1 cut(s)	907
BcoDI	GTCTC	4 cut(s)	311, 404, 510, 818
BcuI	ACTAGT	1 cut(s)	662
BfaI	CTAG	2 cut(s)	407, 663
BfuI	GTATCC	1 cut(s)	196
BisI	GCNGC	3 cut(s)	48, 60, 740
BlsI	GCNGC	3 cut(s)	49, 61, 741
Bme1390I	CCNGG	1 cut(s)	907
BmeT110I	CYCGRG	1 cut(s)	885
BmgBI	CACGTC	1 cut(s)	631
BmrFI	CCNGG	1 cut(s)	907
BmrI	ACTGGG	2 cut(s)	344, 665
BmsI	GCATC	2 cut(s)	600, 818
BmuI	ACTGGG	2 cut(s)	344, 665
BpmI	CTGGAG	1 cut(s)	534
Bpu14I	TTCGAA	1 cut(s)	726
BpuMI	CCSGG	1 cut(s)	907
BsaI	GGTCTC	1 cut(s)	311
BsaJI	CCNNGG	2 cut(s)	425, 769
BsaXI	ACNNNNNCTCC	6 cut(s)	65, 95, 263, 293, 427, 457
Bsc4I	CCNNNNNNNGG	2 cut(s)	431, 508
Bse1I	ACTGG	6 cut(s)	289, 311, 321, 350, 379, 660
BseDI	CCNNGG	2 cut(s)	425, 769
BseGI	GGATG	1 cut(s)	388
BseLI	CCNNNNNNNGG	2 cut(s)	431, 508
BseMII	CTCAG	3 cut(s)	54, 252, 838
BseNI	ACTGG	6 cut(s)	289, 311, 321, 350, 379, 660
BseSI	GKGCMC	1 cut(s)	566
BseXI	GCAGC	2 cut(s)	59, 71
Bsh1236I	CGCG	1 cut(s)	492
BshFI	GGCC	2 cut(s)	233, 541
BsiHKCI	CYCGRG	1 cut(s)	885
BsiSI	CCGG	1 cut(s)	906
BslI	CCNNNNNNNGG	2 cut(s)	431, 508
BsmAI	GTCTC	4 cut(s)	311, 404, 510, 818
BsmBI	CGTCTC	1 cut(s)	818
BsnI	GGCC	2 cut(s)	233, 541
Bso31I	GGTCTC	1 cut(s)	311
BsoBI	CYCGRG	1 cut(s)	885
Bsp119I	TTCGAA	1 cut(s)	726
Bsp1286I	GDGCHC	1 cut(s)	566
Bsp143I	GATC	7 cut(s)	160, 439, 505, 595, 625, 668, 851
Bsp68I	TCGCGA	1 cut(s)	492
BspACI	CCGC	4 cut(s)	57, 62, 104, 739
BspANI	GGCC	2 cut(s)	233, 541
BspCNI	CTCAG	3 cut(s)	53, 253, 837
BspFNI	CGCG	1 cut(s)	492
BspPI	GGATC	3 cut(s)	155, 603, 676
BspT104I	TTCGAA	1 cut(s)	726
BspTNI	GGTCTC	1 cut(s)	311
BsrI	ACTGG	6 cut(s)	289, 311, 321, 350, 379, 660
BssECI	CCNNGG	2 cut(s)	425, 769
BssMI	GATC	7 cut(s)	160, 439, 505, 595, 625, 668, 851
BssT1I	CCWWGG	2 cut(s)	425, 769
Bst4CI	ACNGT	3 cut(s)	256, 532, 577
Bst6I	CTCTTC	2 cut(s)	330, 821
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstBI	TTCGAA	1 cut(s)	726
BstC8I	GCNNGC	1 cut(s)	648
BstDEI	CTNAG	3 cut(s)	40, 261, 824
BstEII	GGTNACC	1 cut(s)	344
BstENI	CCTNNNNNAGG	1 cut(s)	429
BstF5I	GGATG	1 cut(s)	388
BstFNI	CGCG	1 cut(s)	492
BstHHI	GCGC	1 cut(s)	372
BstKTI	GATC	7 cut(s)	163, 442, 508, 598, 628, 671, 854
BstMAI	GTCTC	4 cut(s)	311, 404, 510, 818
BstMBI	GATC	7 cut(s)	160, 439, 505, 595, 625, 668, 851
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 149, 774
BstPI	GGTNACC	1 cut(s)	344
BstSCI	CCNGG	1 cut(s)	905
BstSLI	GKGCMC	1 cut(s)	566
BstUI	CGCG	1 cut(s)	492
BstV1I	GCAGC	2 cut(s)	59, 71
BstX2I	RGATCY	1 cut(s)	595
BstYI	RGATCY	1 cut(s)	595
BsuI	GTATCC	1 cut(s)	196
BsuRI	GGCC	2 cut(s)	233, 541
BtrI	CACGTC	1 cut(s)	631
BtsCI	GGATG	1 cut(s)	388
BtsIMutI	CAGTG	3 cut(s)	357, 372, 537
BtuMI	TCGCGA	1 cut(s)	492
Cac8I	GCNNGC	1 cut(s)	648
CaiI	CAGNNNCTG	1 cut(s)	260
CfoI	GCGC	1 cut(s)	372
Csp6I	GTAC	1 cut(s)	276
CviAII	CATG	2 cut(s)	592, 634
CviJI	RGCY	9 cut(s)	50, 79, 233, 310, 512, 541, 638, 872, 884
CviKI_1	RGCY	9 cut(s)	50, 79, 233, 310, 512, 541, 638, 872, 884
CviQI	GTAC	1 cut(s)	276
DdeI	CTNAG	3 cut(s)	40, 261, 824
DpnI	GATC	7 cut(s)	162, 441, 507, 597, 627, 670, 853
DpnII	GATC	7 cut(s)	160, 439, 505, 595, 625, 668, 851
EaeI	YGGCCR	1 cut(s)	231
Eam1104I	CTCTTC	2 cut(s)	330, 821
EarI	CTCTTC	2 cut(s)	330, 821
EciI	GGCGGA	1 cut(s)	119
Eco130I	CCWWGG	2 cut(s)	425, 769
Eco147I	AGGCCT	1 cut(s)	541
Eco31I	GGTCTC	1 cut(s)	311
Eco88I	CYCGRG	1 cut(s)	885
Eco91I	GGTNACC	1 cut(s)	344
EcoNI	CCTNNNNNAGG	1 cut(s)	429
EcoO65I	GGTNACC	1 cut(s)	344
EcoT14I	CCWWGG	2 cut(s)	425, 769
EcoT22I	ATGCAT	1 cut(s)	615
ErhI	CCWWGG	2 cut(s)	425, 769
Esp3I	CGTCTC	1 cut(s)	818
FaeI	CATG	2 cut(s)	595, 637
FalI	AAGNNNNNCTT	2 cut(s)	450, 482
FatI	CATG	2 cut(s)	591, 633
FauI	CCCGC	1 cut(s)	64
Fnu4HI	GCNGC	3 cut(s)	48, 60, 740
FokI	GGATG	1 cut(s)	395
Fsp4HI	GCNGC	3 cut(s)	48, 60, 740
FspBI	CTAG	2 cut(s)	407, 663
GlaI	GCGC	1 cut(s)	371
GluI	GCNGC	3 cut(s)	48, 60, 740
GsuI	CTGGAG	1 cut(s)	534
HaeIII	GGCC	2 cut(s)	233, 541
HapII	CCGG	1 cut(s)	906
HhaI	GCGC	1 cut(s)	372
Hin1II	CATG	2 cut(s)	595, 637
Hin6I	GCGC	1 cut(s)	370
HinP1I	GCGC	1 cut(s)	370
HinfI	GANTC	3 cut(s)	215, 412, 808
HpaII	CCGG	1 cut(s)	906
HphI	GGTGA	3 cut(s)	136, 356, 389
Hpy166II	GTNNAC	2 cut(s)	223, 282
Hpy188I	TCNGA	4 cut(s)	117, 262, 827, 864
Hpy188III	TCNNGA	9 cut(s)	200, 328, 407, 443, 467, 491, 557, 785, 846
Hpy8I	GTNNAC	2 cut(s)	223, 282
HpyAV	CCTTC	7 cut(s)	121, 181, 383, 389, 425, 722, 891
HpyCH4III	ACNGT	3 cut(s)	256, 532, 577
HpyCH4IV	ACGT	2 cut(s)	278, 630
HpyCH4V	TGCA	3 cut(s)	603, 613, 777
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 149, 774
HpyF3I	CTNAG	3 cut(s)	40, 261, 824
HpySE526I	ACGT	2 cut(s)	278, 630
Hsp92II	CATG	2 cut(s)	595, 637
HspAI	GCGC	1 cut(s)	370
Kzo9I	GATC	7 cut(s)	160, 439, 505, 595, 625, 668, 851
LmnI	GCTCC	2 cut(s)	157, 865
Lsp1109I	GCAGC	2 cut(s)	59, 71
LweI	GCATC	2 cut(s)	600, 818
MaeI	CTAG	2 cut(s)	407, 663
MaeII	ACGT	2 cut(s)	278, 630
MaeIII	GTNAC	2 cut(s)	85, 344
MalI	GATC	7 cut(s)	162, 441, 507, 597, 627, 670, 853
MboI	GATC	7 cut(s)	160, 439, 505, 595, 625, 668, 851
MflI	RGATCY	1 cut(s)	595
MhlI	GDGCHC	1 cut(s)	566
MluCI	AATT	2 cut(s)	586, 721
MlyI	GAGTC	1 cut(s)	406
Mph1103I	ATGCAT	1 cut(s)	615
MroXI	GAANNNNTTC	1 cut(s)	462
MseI	TTAA	3 cut(s)	480, 699, 867
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	1 cut(s)	906
MspR9I	CCNGG	1 cut(s)	907
MvnI	CGCG	1 cut(s)	492
MwoI	GCNNNNNNNGC	3 cut(s)	56, 149, 774
NciI	CCSGG	1 cut(s)	907
NdeII	GATC	7 cut(s)	160, 439, 505, 595, 625, 668, 851
NlaIII	CATG	2 cut(s)	595, 637
NmeAIII	GCCGAG	1 cut(s)	259
NmuCI	GTSAC	1 cut(s)	344
NruI	TCGCGA	1 cut(s)	492
NsiI	ATGCAT	1 cut(s)	615
NspV	TTCGAA	1 cut(s)	726
PceI	AGGCCT	1 cut(s)	541
PcsI	WCGNNNNNNNCGW	1 cut(s)	892
PdmI	GAANNNNTTC	1 cut(s)	462
PfeI	GAWTC	2 cut(s)	215, 808
PkrI	GCNGC	3 cut(s)	49, 61, 741
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
PspEI	GGTNACC	1 cut(s)	344
PstNI	CAGNNNCTG	1 cut(s)	260
PsuI	RGATCY	1 cut(s)	595
RruI	TCGCGA	1 cut(s)	492
RsaI	GTAC	1 cut(s)	277
RsaNI	GTAC	1 cut(s)	276
SaqAI	TTAA	3 cut(s)	480, 699, 867
SatI	GCNGC	3 cut(s)	48, 60, 740
Sau3AI	GATC	7 cut(s)	160, 439, 505, 595, 625, 668, 851
SchI	GAGTC	1 cut(s)	406
ScrFI	CCNGG	1 cut(s)	907
SduI	GDGCHC	1 cut(s)	566
SetI	ASST	9 cut(s)	81, 126, 138, 192, 251, 281, 633, 692, 874
SfaNI	GCATC	2 cut(s)	600, 818
SfuI	TTCGAA	1 cut(s)	726
SpeI	ACTAGT	1 cut(s)	662
Sse9I	AATT	2 cut(s)	586, 721
SseBI	AGGCCT	1 cut(s)	541
SsiI	CCGC	4 cut(s)	57, 62, 104, 739
SspMI	CTAG	2 cut(s)	407, 663
StuI	AGGCCT	1 cut(s)	541
StyD4I	CCNGG	1 cut(s)	905
StyI	CCWWGG	2 cut(s)	425, 769
TaaI	ACNGT	3 cut(s)	256, 532, 577
TaiI	ACGT	2 cut(s)	281, 633
TaqI	TCGA	1 cut(s)	726
TasI	AATT	2 cut(s)	586, 721
TauI	GCSGC	1 cut(s)	742
TfiI	GAWTC	2 cut(s)	215, 808
Tru1I	TTAA	3 cut(s)	480, 699, 867
Tru9I	TTAA	3 cut(s)	480, 699, 867
TscAI	CASTG	3 cut(s)	357, 379, 537
TseFI	GTSAC	1 cut(s)	344
TseI	GCWGC	2 cut(s)	47, 59
Tsp45I	GTSAC	1 cut(s)	344
TspDTI	ATGAA	4 cut(s)	348, 471, 580, 768
TspGWI	ACGGA	2 cut(s)	73, 257
TspRI	CASTG	3 cut(s)	357, 379, 537
XagI	CCTNNNNNAGG	1 cut(s)	429
XapI	RAATTY	2 cut(s)	586, 721
XbaI	TCTAGA	1 cut(s)	406
XcmI	CCANNNNNNNNNTGG	1 cut(s)	423
XmnI	GAANNNNTTC	1 cut(s)	462
XspI	CTAG	2 cut(s)	407, 663
Zsp2I	ATGCAT	1 cut(s)	615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.