Rh1BG395600

Bacterial Ig-like domain 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0003100
Physical Location & Seq
Reverse (-)
52036274 .. 52036690
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG395600.1

Sequence Viewer

Length: 417 bp
ATGTACCTTGTCCCTGGAACGCATCTGGATGTCATGCTTCTTGGTGGTCTCGAACAGTGGAAAAATGGTGTTGAGTTTGTGGAAACTGTGGAGATCTTAAATAAAGAACATGGTCACATTGATGATGGTGCTTGTGTGAAACGGTTATCTGAGACCTATAGGAGTCTGTACAGAGTTTCACGTGAGATGCTTGGAACCTATAGTATTGTTCGTGGTAATCTTGTTGGGGATGACCATCCTATGCCTGCAGTGGCTGACGTGTCGTTGTCTCTTATATGTAGCATTCCTACCTCAATTGCTTTGATAGCTGATGAACCCGTAATTCAACTTGAAGTTATAAGAACAGCAATCCAGGCTGACCGTAGTTCAGGGAGAATTCGTGTCACTCCCATTACTGTGGCTGCACCATTAGGTTAG

Protein Analysis

138

Amino Acids

15.05

Weight (kDa)

5.27

Isoelectric Point (pI)

34.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ig_NUP210_7th PF22962 2 - 94 2e-08 NUP210 Ig-like domain 7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 338
AcsI RAATTY 1 cut(s) 375
AcvI CACGTG 1 cut(s) 182
AfaI GTAC 2 cut(s) 5, 170
AflIII ACRYGT 1 cut(s) 258
AgsI TTSAA 2 cut(s) 326, 332
AjiI CACGTC 1 cut(s) 259
AjnI CCWGG 2 cut(s) 13, 351
AluBI AGCT 1 cut(s) 308
AluI AGCT 1 cut(s) 308
Alw26I GTCTC 3 cut(s) 53, 146, 273
AlwNI CAGNNNCTG 1 cut(s) 254
ApeKI GCWGC 1 cut(s) 401
ApoI RAATTY 1 cut(s) 375
BbrPI CACGTG 1 cut(s) 182
BbvI GCAGC 1 cut(s) 388
BccI CCATC 2 cut(s) 119, 243
BciT130I CCWGG 2 cut(s) 15, 353
BcoDI GTCTC 3 cut(s) 53, 146, 273
BfmI CTRYAG 3 cut(s) 157, 199, 246
BglII AGATCT 1 cut(s) 93
BisI GCNGC 1 cut(s) 402
BlsI GCNGC 1 cut(s) 403
Bme1390I CCNGG 2 cut(s) 15, 353
BmgBI CACGTC 1 cut(s) 259
BmiI GGNNCC 1 cut(s) 196
BmrFI CCNGG 2 cut(s) 15, 353
BmsI GCATC 2 cut(s) 31, 177
BsaAI YACGTR 1 cut(s) 182
BsaBI GATNNNNATC 1 cut(s) 234
BsaI GGTCTC 2 cut(s) 53, 146
BsaJI CCNNGG 1 cut(s) 13
BsaXI ACNNNNNCTCC 2 cut(s) 364, 394
Bse8I GATNNNNATC 1 cut(s) 234
BseBI CCWGG 2 cut(s) 15, 353
BseDI CCNNGG 1 cut(s) 13
BseGI GGATG 3 cut(s) 34, 235, 235
BseJI GATNNNNATC 1 cut(s) 234
BseMII CTCAG 1 cut(s) 141
BseXI GCAGC 1 cut(s) 388
BsgI GTGCAG 1 cut(s) 387
BsmAI GTCTC 3 cut(s) 53, 146, 273
BsmI GAATGC 1 cut(s) 282
Bso31I GGTCTC 2 cut(s) 53, 146
Bsp1407I TGTACA 1 cut(s) 168
Bsp143I GATC 1 cut(s) 93
BspCNI CTCAG 1 cut(s) 142
BspLI GGNNCC 1 cut(s) 196
BspMAI CTGCAG 1 cut(s) 250
BspTNI GGTCTC 2 cut(s) 53, 146
BsrGI TGTACA 1 cut(s) 168
BssECI CCNNGG 1 cut(s) 13
BssMI GATC 1 cut(s) 93
Bst2UI CCWGG 2 cut(s) 15, 353
Bst4CI ACNGT 5 cut(s) 57, 88, 144, 362, 397
BstAUI TGTACA 1 cut(s) 168
BstBAI YACGTR 1 cut(s) 182
BstC8I GCNNGC 1 cut(s) 246
BstDEI CTNAG 1 cut(s) 150
BstF5I GGATG 3 cut(s) 34, 235, 235
BstKTI GATC 1 cut(s) 96
BstMAI GTCTC 3 cut(s) 53, 146, 273
BstMBI GATC 1 cut(s) 93
BstMWI GCNNNNNNNGC 2 cut(s) 305, 353
BstNI CCWGG 2 cut(s) 15, 353
BstSCI CCNGG 2 cut(s) 13, 351
BstSFI CTRYAG 3 cut(s) 157, 199, 246
BstV1I GCAGC 1 cut(s) 388
BstX2I RGATCY 1 cut(s) 93
BstXI CCANNNNNNTGG 1 cut(s) 397
BstYI RGATCY 1 cut(s) 93
BtrI CACGTC 1 cut(s) 259
BtsCI GGATG 3 cut(s) 34, 235, 235
BtsI GCAGTG 1 cut(s) 255
BtsIMutI CAGTG 2 cut(s) 62, 255
Cac8I GCNNGC 1 cut(s) 246
CaiI CAGNNNCTG 1 cut(s) 254
Csp6I GTAC 2 cut(s) 4, 169
CviAII CATG 2 cut(s) 34, 110
CviJI RGCY 4 cut(s) 254, 308, 356, 401
CviKI_1 RGCY 4 cut(s) 254, 308, 356, 401
CviQI GTAC 2 cut(s) 4, 169
DdeI CTNAG 1 cut(s) 150
DpnI GATC 1 cut(s) 95
DpnII GATC 1 cut(s) 93
Eco31I GGTCTC 2 cut(s) 53, 146
Eco72I CACGTG 1 cut(s) 182
EcoRI GAATTC 1 cut(s) 375
EcoRII CCWGG 2 cut(s) 13, 351
FaeI CATG 2 cut(s) 37, 113
FaiI YATR 8 cut(s) 35, 111, 159, 201, 242, 275, 277, 338
FatI CATG 2 cut(s) 33, 109
Fnu4HI GCNGC 1 cut(s) 402
FokI GGATG 3 cut(s) 41, 222, 242
Fsp4HI GCNGC 1 cut(s) 402
GluI GCNGC 1 cut(s) 402
Hin1II CATG 2 cut(s) 37, 113
HinfI GANTC 1 cut(s) 163
Hpy188I TCNGA 1 cut(s) 151
Hpy188III TCNNGA 2 cut(s) 26, 50
HpyCH4III ACNGT 5 cut(s) 57, 88, 144, 362, 397
HpyCH4IV ACGT 2 cut(s) 181, 258
HpyCH4V TGCA 2 cut(s) 248, 404
HpyF10VI GCNNNNNNNGC 2 cut(s) 305, 353
HpyF3I CTNAG 1 cut(s) 150
HpySE526I ACGT 2 cut(s) 181, 258
Hsp92II CATG 2 cut(s) 37, 113
Kzo9I GATC 1 cut(s) 93
LpnPI CCDG 6 cut(s) 11, 27, 258, 338, 354, 365
Lsp1109I GCAGC 1 cut(s) 388
LweI GCATC 2 cut(s) 31, 177
MaeII ACGT 2 cut(s) 181, 258
MaeIII GTNAC 2 cut(s) 113, 382
MalI GATC 1 cut(s) 95
MboI GATC 1 cut(s) 93
MfeI CAATTG 1 cut(s) 294
MflI RGATCY 1 cut(s) 93
MluCI AATT 3 cut(s) 294, 321, 375
MlyI GAGTC 1 cut(s) 172
MnlI CCTC 1 cut(s) 301
MseI TTAA 1 cut(s) 98
MslI CAYNNNNRTG 3 cut(s) 27, 120, 395
MspR9I CCNGG 2 cut(s) 15, 353
MunI CAATTG 1 cut(s) 294
Mva1269I GAATGC 1 cut(s) 282
MvaI CCWGG 2 cut(s) 15, 353
MwoI GCNNNNNNNGC 2 cut(s) 305, 353
NdeII GATC 1 cut(s) 93
NlaIII CATG 2 cut(s) 37, 113
NlaIV GGNNCC 1 cut(s) 196
NmuCI GTSAC 2 cut(s) 113, 382
PctI GAATGC 1 cut(s) 282
PkrI GCNGC 1 cut(s) 403
PleI GAGTC 1 cut(s) 171
PmaCI CACGTG 1 cut(s) 182
PmlI CACGTG 1 cut(s) 182
PpsI GAGTC 1 cut(s) 171
Ppu21I YACGTR 1 cut(s) 182
PsiI TTATAA 1 cut(s) 338
Psp6I CCWGG 2 cut(s) 13, 351
PspCI CACGTG 1 cut(s) 182
PspGI CCWGG 2 cut(s) 13, 351
PspN4I GGNNCC 1 cut(s) 196
PstI CTGCAG 1 cut(s) 250
PstNI CAGNNNCTG 1 cut(s) 254
PsuI RGATCY 1 cut(s) 93
RsaI GTAC 2 cut(s) 5, 170
RsaNI GTAC 2 cut(s) 4, 169
RseI CAYNNNNRTG 3 cut(s) 27, 120, 395
SaqAI TTAA 1 cut(s) 98
SatI GCNGC 1 cut(s) 402
Sau3AI GATC 1 cut(s) 93
SchI GAGTC 1 cut(s) 172
ScrFI CCNGG 2 cut(s) 15, 353
SetI ASST 8 cut(s) 9, 158, 184, 200, 261, 293, 310, 415
SfaNI GCATC 2 cut(s) 31, 177
SfcI CTRYAG 3 cut(s) 157, 199, 246
SmiMI CAYNNNNRTG 3 cut(s) 27, 120, 395
Sse9I AATT 3 cut(s) 294, 321, 375
StyD4I CCNGG 2 cut(s) 13, 351
TaaI ACNGT 5 cut(s) 57, 88, 144, 362, 397
TaiI ACGT 2 cut(s) 184, 261
TaqI TCGA 1 cut(s) 51
TasI AATT 3 cut(s) 294, 321, 375
TatI WGTACW 1 cut(s) 168
Tru1I TTAA 1 cut(s) 98
Tru9I TTAA 1 cut(s) 98
TscAI CASTG 2 cut(s) 62, 255
TseFI GTSAC 2 cut(s) 113, 382
TseI GCWGC 1 cut(s) 401
Tsp45I GTSAC 2 cut(s) 113, 382
TspDTI ATGAA 1 cut(s) 327
TspRI CASTG 2 cut(s) 62, 255
XapI RAATTY 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.