Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003100

Physical Location & Seq

Genomic Coordinates Reverse (-)

63944841 .. 63945350

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG426600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGCTGATAAGATTGTCCTGACTGTAGCAGAAGCCATGTCACTTGATCCTCCCTCACCTGTACTTGTCCTCGTTGGCGCTGCTGTTCGTTATAATCTGAAAGTTATTCGTGTGAACAAGGCTCAAGTGCTAACTTGGCCGTCTCCACTTCATCAATGGTCTTCATCAAACTCTTCAGTTGCTCATGTTGACTCTATGAAGGGTTTGACAAACGCATTGAGCCTAGGGGTAACAAATGCCATAGTTGAAGATACAAGGGTCAATGAAGCTGCTGTAACAATGAAAGCATCAAATGGTGCCTACCTTTATAGATGTGATGCATTCAGTTCCTTGATAAAGTGGAAAGTAGAGAGTGGACCTGTCATCATTGTCAAAGGGGAGGCATCTAATTTACACATGTTAGGGAATGCTGAGTTCCATACATCAAGTTATGGTTCTCCATGTTCATGGGCAGATTTATATGCTTCCGCTTCTGGTGGAGCTACTTTTCATGCTACATTGCCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0012505 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Big_2 RRM_1

Protein Analysis

169

Amino Acids

17.93

Weight (kDa)

6.96

Isoelectric Point (pI)

21.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07920
malus_domestica	MD03G1050000.v1.1 MD11G1052200.v1.1
prunus_persica	Prupe.6G039800_v2.0.a1
pyrus_communis	pycom03g03960 pycom11g04260
rosa_chinensis	RchiOBHm_Chr1g0379851 RchiOBHm_Chr1g0379891
rosa_laevigata	RLG00000026352 RLG00000026354
rosa_multiflora	Rmu_co8429969.1_g000001 Rmu_sc0004184.1_g000024 Rmu_sc0004184.1_g000025 Rmu_sc0004184.1_g000026 Rmu_sc0014259.1_g000013
rosa_roxburghii	Rroxscaffold_4G00279870 Rroxscaffold_4G00279880
rosa_rugosa	Rorug01G0415400 Rorug01G0415500 Rorug01G0415600
rosa_samantha	Rh1AG439500 Rh1AG439600 Rh1AG439700 Rh1BG395500 Rh1BG395600 Rh1BG395700 Rh1BG395800 Rh1CG408700 Rh1CG408800 Rh1CG408900 Rh1CG409400 Rh1DG426400 Rh1DG426500 Rh1DG426600 Rh1DG426700
rosa_wichuraiana	Rw1G038260 Rw1G038270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	93
AccB1I	GGYRCC	1 cut(s)	296
AciI	CCGC	1 cut(s)	468
AclWI	GGATC	1 cut(s)	41
AcoI	YGGCCR	1 cut(s)	137
AcuI	CTGAAG	1 cut(s)	159
AfaI	GTAC	1 cut(s)	63
AflIII	ACRYGT	1 cut(s)	396
AgsI	TTSAA	1 cut(s)	248
AluBI	AGCT	2 cut(s)	269, 482
AluI	AGCT	2 cut(s)	269, 482
Alw26I	GTCTC	1 cut(s)	147
AlwI	GGATC	1 cut(s)	41
AoxI	GGCC	1 cut(s)	137
ApeKI	GCWGC	2 cut(s)	80, 269
AspA2I	CCTAGG	1 cut(s)	223
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	1 cut(s)	356
AsuHPI	GGTGA	1 cut(s)	48
AvaII	GGWCC	1 cut(s)	356
AvrII	CCTAGG	1 cut(s)	223
BaeI	ACNNNNGTAYC	2 cut(s)	243, 276
BanI	GGYRCC	1 cut(s)	296
BbsI	GAAGAC	1 cut(s)	153
BbvI	GCAGC	2 cut(s)	67, 256
BceAI	ACGGC	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	147
BfaI	CTAG	1 cut(s)	224
BfmI	CTRYAG	1 cut(s)	24
BfoI	RGCGCY	1 cut(s)	81
BisI	GCNGC	2 cut(s)	81, 270
BlnI	CCTAGG	1 cut(s)	223
BlsI	GCNGC	2 cut(s)	82, 271
Bme18I	GGWCC	1 cut(s)	356
BmgT120I	GGNCC	1 cut(s)	356
BmiI	GGNNCC	1 cut(s)	298
BmsI	GCATC	3 cut(s)	296, 307, 392
BpiI	GAAGAC	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	223
Bse3DI	GCAATG	1 cut(s)	497
BseDI	CCNNGG	1 cut(s)	223
BseMI	GCAATG	1 cut(s)	497
BseMII	CTCAG	1 cut(s)	402
BseXI	GCAGC	2 cut(s)	67, 256
BshFI	GGCC	1 cut(s)	139
BshNI	GGYRCC	1 cut(s)	296
BsmAI	GTCTC	1 cut(s)	147
BsmBI	CGTCTC	1 cut(s)	147
BsmI	GAATGC	2 cut(s)	320, 412
BsnI	GGCC	1 cut(s)	139
Bsp143I	GATC	1 cut(s)	46
BspACI	CCGC	1 cut(s)	468
BspANI	GGCC	1 cut(s)	139
BspCNI	CTCAG	1 cut(s)	403
BspLI	GGNNCC	1 cut(s)	298
BspPI	GGATC	1 cut(s)	41
BspT107I	GGYRCC	1 cut(s)	296
BsrDI	GCAATG	1 cut(s)	497
BssECI	CCNNGG	1 cut(s)	223
BssMI	GATC	1 cut(s)	46
BssT1I	CCWWGG	1 cut(s)	223
Bst4CI	ACNGT	1 cut(s)	25
Bst6I	CTCTTC	1 cut(s)	178
BstDEI	CTNAG	1 cut(s)	411
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	1 cut(s)	49
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	1 cut(s)	46
BstMWI	GCNNNNNNNGC	1 cut(s)	136
BstNSI	RCATGY	1 cut(s)	400
BstSFI	CTRYAG	1 cut(s)	24
BstV1I	GCAGC	2 cut(s)	67, 256
BstV2I	GAAGAC	1 cut(s)	153
BstXI	CCANNNNNNTGG	1 cut(s)	447
BsuRI	GGCC	1 cut(s)	139
CfoI	GCGC	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	356
Csp6I	GTAC	1 cut(s)	62
CviAII	CATG	6 cut(s)	37, 185, 397, 441, 447, 491
CviJI	RGCY	7 cut(s)	5, 35, 122, 139, 222, 269, 482
CviKI_1	RGCY	7 cut(s)	5, 35, 122, 139, 222, 269, 482
CviQI	GTAC	1 cut(s)	62
DdeI	CTNAG	1 cut(s)	411
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
EaeI	YGGCCR	1 cut(s)	137
Eam1104I	CTCTTC	1 cut(s)	178
EarI	CTCTTC	1 cut(s)	178
Eco130I	CCWWGG	1 cut(s)	223
Eco47I	GGWCC	1 cut(s)	356
Eco57I	CTGAAG	1 cut(s)	159
EcoT14I	CCWWGG	1 cut(s)	223
EcoT22I	ATGCAT	1 cut(s)	322
ErhI	CCWWGG	1 cut(s)	223
Esp3I	CGTCTC	1 cut(s)	147
FaeI	CATG	6 cut(s)	40, 188, 400, 444, 450, 494
FatI	CATG	6 cut(s)	36, 184, 396, 440, 446, 490
Fnu4HI	GCNGC	2 cut(s)	81, 270
Fsp4HI	GCNGC	2 cut(s)	81, 270
FspBI	CTAG	1 cut(s)	224
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	2 cut(s)	81, 270
HaeII	RGCGCY	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	139
HhaI	GCGC	1 cut(s)	80
Hin1II	CATG	6 cut(s)	40, 188, 400, 444, 450, 494
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	1 cut(s)	191
HphI	GGTGA	1 cut(s)	48
Hpy166II	GTNNAC	3 cut(s)	115, 190, 356
Hpy188I	TCNGA	1 cut(s)	99
Hpy188III	TCNNGA	1 cut(s)	19
Hpy8I	GTNNAC	3 cut(s)	115, 190, 356
HpyAV	CCTTC	1 cut(s)	193
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4V	TGCA	1 cut(s)	320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	136
HpyF3I	CTNAG	1 cut(s)	411
Hsp92II	CATG	6 cut(s)	40, 188, 400, 444, 450, 494
HspAI	GCGC	1 cut(s)	78
Kzo9I	GATC	1 cut(s)	46
LmnI	GCTCC	1 cut(s)	479
LpnPI	CCDG	4 cut(s)	32, 72, 372, 459
Lsp1109I	GCAGC	2 cut(s)	67, 256
LweI	GCATC	3 cut(s)	296, 307, 392
MaeI	CTAG	1 cut(s)	224
MaeIII	GTNAC	3 cut(s)	39, 229, 274
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MboII	GAAGA	3 cut(s)	153, 165, 260
MluCI	AATT	2 cut(s)	388, 505
MlyI	GAGTC	1 cut(s)	185
MnlI	CCTC	4 cut(s)	60, 64, 80, 373
Mph1103I	ATGCAT	1 cut(s)	322
MseI	TTAA	1 cut(s)	508
MslI	CAYNNNNRTG	1 cut(s)	445
Mva1269I	GAATGC	2 cut(s)	320, 412
MwoI	GCNNNNNNNGC	1 cut(s)	136
NdeII	GATC	1 cut(s)	46
NlaIII	CATG	6 cut(s)	40, 188, 400, 444, 450, 494
NlaIV	GGNNCC	1 cut(s)	298
NmuCI	GTSAC	1 cut(s)	39
NsiI	ATGCAT	1 cut(s)	322
NspI	RCATGY	1 cut(s)	400
PciI	ACATGT	1 cut(s)	396
PctI	GAATGC	2 cut(s)	320, 412
PkrI	GCNGC	2 cut(s)	82, 271
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
PscI	ACATGT	1 cut(s)	396
PsiI	TTATAA	1 cut(s)	93
PspN4I	GGNNCC	1 cut(s)	298
PspPI	GGNCC	1 cut(s)	356
RsaI	GTAC	1 cut(s)	63
RsaNI	GTAC	1 cut(s)	62
RseI	CAYNNNNRTG	1 cut(s)	445
SaqAI	TTAA	1 cut(s)	508
SatI	GCNGC	2 cut(s)	81, 270
Sau3AI	GATC	1 cut(s)	46
Sau96I	GGNCC	1 cut(s)	356
SchI	GAGTC	1 cut(s)	185
SetI	ASST	5 cut(s)	61, 271, 306, 361, 484
SfaNI	GCATC	3 cut(s)	296, 307, 392
SfcI	CTRYAG	1 cut(s)	24
SinI	GGWCC	1 cut(s)	356
SmiMI	CAYNNNNRTG	1 cut(s)	445
SmlI	CTYRAG	1 cut(s)	123
SmoI	CTYRAG	1 cut(s)	123
Sse9I	AATT	2 cut(s)	388, 505
SsiI	CCGC	1 cut(s)	468
SspMI	CTAG	1 cut(s)	224
StyI	CCWWGG	1 cut(s)	223
TaaI	ACNGT	1 cut(s)	25
TasI	AATT	2 cut(s)	388, 505
TatI	WGTACW	1 cut(s)	61
Tru1I	TTAA	1 cut(s)	508
Tru9I	TTAA	1 cut(s)	508
TseFI	GTSAC	1 cut(s)	39
TseI	GCWGC	2 cut(s)	80, 269
Tsp45I	GTSAC	1 cut(s)	39
TspDTI	ATGAA	7 cut(s)	140, 153, 212, 279, 296, 435, 479
VpaK11BI	GGWCC	1 cut(s)	356
XceI	RCATGY	1 cut(s)	400
XcmI	CCANNNNNNNNNTGG	1 cut(s)	153
XmaJI	CCTAGG	1 cut(s)	223
XspI	CTAG	1 cut(s)	224
Zsp2I	ATGCAT	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.