Rh1CG409400

Eukaryotic translation initiation factor 2 subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0003100
Physical Location & Seq
Reverse (-)
67324883 .. 67325071
189 bp
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UTR
Exon/CDS
Intron
Rh1CG409400.1

Sequence Viewer

Length: 189 bp
ATGGAGTACTGTAGGAGTGTGGTTAGGCAGCCGGATCATGTAATGAGTTTCATGCTTGCGGAATTGGACACGAATGGATCGCTTGATGGACAGCTGAGGTTAGTTGTGGAGGGAAGATTTTCGCCTATGAAGATCGGAGCAGTCTTTCGGAAATATGTCTATCAATATGTGATTTGCGGAAATAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
eIF-5_eIF-2B

Protein Analysis

62

Amino Acids

7.11

Weight (kDa)

7.8

Isoelectric Point (pI)

24.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
eIF-5_eIF-2B PF01873 2 - 60 5.8e-14 Domain found in IF2B/IF5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 59, 177
AclWI GGATC 2 cut(s) 42, 85
AfaI GTAC 1 cut(s) 8
AluBI AGCT 1 cut(s) 94
AluI AGCT 1 cut(s) 94
AlwI GGATC 2 cut(s) 42, 85
ApeKI GCWGC 1 cut(s) 28
Asp700I GAANNNNTTC 1 cut(s) 118
BbvCI CCTCAGC 1 cut(s) 95
BbvI GCAGC 1 cut(s) 40
BccI CCATC 1 cut(s) 80
BfmI CTRYAG 1 cut(s) 10
BisI GCNGC 1 cut(s) 29
BlsI GCNGC 1 cut(s) 30
BmcAI AGTACT 1 cut(s) 8
Bpu10I CCTNAGC 1 cut(s) 95
BseMII CTCAG 1 cut(s) 86
BseXI GCAGC 1 cut(s) 40
BsiSI CCGG 1 cut(s) 32
Bsp143I GATC 3 cut(s) 34, 77, 132
BspACI CCGC 2 cut(s) 59, 177
BspCNI CTCAG 1 cut(s) 87
BspPI GGATC 2 cut(s) 42, 85
BssMI GATC 3 cut(s) 34, 77, 132
Bst4CI ACNGT 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 57
BstDEI CTNAG 1 cut(s) 95
BstKTI GATC 3 cut(s) 37, 80, 135
BstMBI GATC 3 cut(s) 34, 77, 132
BstSFI CTRYAG 1 cut(s) 10
BstV1I GCAGC 1 cut(s) 40
Cac8I GCNNGC 1 cut(s) 57
Csp6I GTAC 1 cut(s) 7
CviAII CATG 2 cut(s) 38, 52
CviJI RGCY 2 cut(s) 31, 94
CviKI_1 RGCY 2 cut(s) 31, 94
CviQI GTAC 1 cut(s) 7
DdeI CTNAG 1 cut(s) 95
DpnI GATC 3 cut(s) 36, 79, 134
DpnII GATC 3 cut(s) 34, 77, 132
FaeI CATG 2 cut(s) 41, 55
FaiI YATR 5 cut(s) 39, 53, 128, 156, 168
FatI CATG 2 cut(s) 37, 51
Fnu4HI GCNGC 1 cut(s) 29
Fsp4HI GCNGC 1 cut(s) 29
GluI GCNGC 1 cut(s) 29
HapII CCGG 1 cut(s) 32
Hin1II CATG 2 cut(s) 41, 55
HpaII CCGG 1 cut(s) 32
Hpy188I TCNGA 2 cut(s) 137, 150
HpyCH4III ACNGT 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 95
Hsp92II CATG 2 cut(s) 41, 55
Kzo9I GATC 3 cut(s) 34, 77, 132
LmnI GCTCC 1 cut(s) 137
LpnPI CCDG 1 cut(s) 45
Lsp1109I GCAGC 1 cut(s) 40
MalI GATC 3 cut(s) 36, 79, 134
MboI GATC 3 cut(s) 34, 77, 132
MboII GAAGA 2 cut(s) 126, 142
MluCI AATT 1 cut(s) 62
MnlI CCTC 2 cut(s) 90, 103
MroXI GAANNNNTTC 1 cut(s) 118
MseI TTAA 1 cut(s) 187
MspA1I CMGCKG 1 cut(s) 94
MspI CCGG 1 cut(s) 32
NdeII GATC 3 cut(s) 34, 77, 132
NlaIII CATG 2 cut(s) 41, 55
PdmI GAANNNNTTC 1 cut(s) 118
PkrI GCNGC 1 cut(s) 30
PvuII CAGCTG 1 cut(s) 94
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
SaqAI TTAA 1 cut(s) 187
SatI GCNGC 1 cut(s) 29
Sau3AI GATC 3 cut(s) 34, 77, 132
ScaI AGTACT 1 cut(s) 8
SetI ASST 2 cut(s) 96, 101
SfcI CTRYAG 1 cut(s) 10
SgeI CNNG 6 cut(s) 44, 50, 64, 68, 82, 95
Sse9I AATT 1 cut(s) 62
SsiI CCGC 2 cut(s) 59, 177
TaaI ACNGT 1 cut(s) 11
TasI AATT 1 cut(s) 62
TatI WGTACW 1 cut(s) 6
Tru1I TTAA 1 cut(s) 187
Tru9I TTAA 1 cut(s) 187
TseI GCWGC 1 cut(s) 28
TspDTI ATGAA 2 cut(s) 40, 143
XmnI GAANNNNTTC 1 cut(s) 118
ZrmI AGTACT 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.