Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0004831

Physical Location & Seq

Genomic Coordinates Forward (+)

21465973 .. 21468221

Gene Structure 2249 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G256200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGAGGCGTGCAACTTGTTCCAATAATCCTCCTCCTCAACAAATCCCATCAACAAGAAGATGTCAGTGTACCCCTCATGGACAAAAATGTGGCTGCAGTGAAAGGATCAATCAGCTTTCAGATGAATTAAGTCCAGGCTCTCAGCTGAAGCCAGATGTTGGGTTAGGTGCCAATTTTGAATCCGAGAGGGAGAATGGACATTTTCTATCTCTTCTTACTTCTTCATCCTCGTTCCGACGACCACATGAAGCTTCAAAACCCACGAGCCATGTTCAAAACAAGGAACACTCTAATTTGCCTTATCAGTCGGACCACTCATCATCACCAGGGCTAATTGTTCGAAGGAGTTTGCATGATCCGCTTTCAGGAGCTACCATAAGGAGCATAACAAGTTGCATTGCTAACACTTCAAACCTCAACTTACCTCATACCATAAGCCAAATTGGAAGAGCTAATTTTCCAGGTTCACAGAATGATGAGCTTAATTCTGGAACTTACACCACATTAATTCTTGGATCTACTCCTCTTCGCCATATTTCTTTTTTCCAAAGTCTTTTTGGGCTGCCTAACAACCTTTTGCGGTCTTTGTGTCCTTCCATTTGGCCTCCCCACGTAAGTGCAGATTCTACATTTCGATTTGGTCAAGCTTCTGCTTTTTCTTCTGATGATAATGGGGTCCAAAATGTTACCCAAATTGATCTATGGAGGCAACTACTGATGGAATCGACTCTATATATGCACACGCCGGCTGATAGCTTGTTGGAAGGTTCGACTTCATTTTTTGTTGTAACAGCTAACCGTGGAGTGAACTTCAGGCTTGTCACAGAGAATGCTGGAGTTATTTACCAACGGCCTCTGCACGTTTCAATTGAAATGCGCAATCGTTCTAGAGCTATGTGGCTTGATGTGGATAGCATGTCATATGAGGAGTTGTTGGCTTTAGAAGATCATATAGGGAATGTCAGCACAGGATTATCTGAGGAAGCAGCTGTTGCATCTCTCACGCGCAGCAATTACTTTTTGTTTGCGGAAGAAAATGCTCAGAAAGACTTTTGCAGCATCTGCCAGGAGGATTTCGTAGAGGAGGATGAGCTAGGAACATTGGATTGTGGGCATGGCTTCCACATTGCTTGCATTAAACAATGGCTGGGATATAAAAATGTATGTCCTATATGCAAATCTCCTGGTTTGTGTACTACACGCCCCTCGTCCTCACTTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

408

Amino Acids

44.94

Weight (kDa)

6.0

Isoelectric Point (pI)

56.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004831)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01850
malus_domestica	MD02G1016500.v1.1 MD15G1161000.v1.1
prunus_persica	Prupe.7G256200_v2.0.a1
pyrus_communis	pycom02g01460
rosa_chinensis	RchiOBHm_Chr2g0086821
rosa_laevigata	RLG00000015799 RLG00000015800 RLG00000015805 RLG00000015806
rosa_multiflora	Rmu_sc0010698.1_g000004
rosa_roxburghii	Rroxscaffold_2G00154110 Rroxscaffold_2G00154130
rosa_rugosa	Rorug01G0469800 Rorug01G0469900 Rorug01G0470000 Rorug07G0271000
rosa_samantha	Rh2AG022600 Rh2AG024500 Rh2AG024600 Rh2AG024800 Rh2BG022800 Rh2BG023100 Rh2CG023500 Rh2CG023600 Rh2CG025100 Rh2DG023000 Rh2DG025000 Rh2DG025100
rosa_wichuraiana	Rw2G001790 Rw2G001930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	878
AccB1I	GGYRCC	1 cut(s)	167
AccB7I	CCANNNNNTGG	1 cut(s)	158
AccII	CGCG	1 cut(s)	1006
AciI	CCGC	3 cut(s)	359, 580, 1028
AclWI	GGATC	3 cut(s)	113, 350, 523
AcuI	CTGAAG	2 cut(s)	167, 796
AfaI	GTAC	2 cut(s)	70, 1195
AfiI	CCNNNNNNNGG	2 cut(s)	158, 365
AgsI	TTSAA	6 cut(s)	179, 255, 275, 411, 867, 872
AjnI	CCWGG	5 cut(s)	133, 325, 460, 1065, 1183
AleI	CACNNNNGTG	1 cut(s)	615
AlwI	GGATC	3 cut(s)	113, 350, 523
AlwNI	CAGNNNCTG	1 cut(s)	1062
AoxI	GGCC	2 cut(s)	602, 851
ApeKI	GCWGC	5 cut(s)	93, 562, 986, 1008, 1056
AseI	ATTAAT	1 cut(s)	506
AspLEI	GCGC	2 cut(s)	879, 1008
AspS9I	GGNCC	2 cut(s)	310, 676
AsuHPI	GGTGA	1 cut(s)	315
AsuII	TTCGAA	1 cut(s)	340
AvaII	GGWCC	2 cut(s)	310, 676
BanI	GGYRCC	1 cut(s)	167
BauI	CACGAG	1 cut(s)	262
BbvI	GCAGC	5 cut(s)	80, 549, 998, 1020, 1068
BccI	CCATC	2 cut(s)	55, 712
BceAI	ACGGC	1 cut(s)	866
BciT130I	CCWGG	5 cut(s)	135, 327, 462, 1067, 1185
BfaI	CTAG	2 cut(s)	888, 1094
BfmI	CTRYAG	1 cut(s)	94
BisI	GCNGC	5 cut(s)	94, 563, 987, 1009, 1057
BlsI	GCNGC	5 cut(s)	95, 564, 988, 1010, 1058
Bme1390I	CCNGG	5 cut(s)	135, 327, 462, 1067, 1185
Bme18I	GGWCC	2 cut(s)	310, 676
BmgT120I	GGNCC	2 cut(s)	310, 676
BmiI	GGNNCC	2 cut(s)	169, 677
BmrFI	CCNGG	5 cut(s)	135, 327, 462, 1067, 1185
BmsI	GCATC	2 cut(s)	1004, 1068
BpmI	CTGGAG	1 cut(s)	855
Bpu14I	TTCGAA	1 cut(s)	340
BsaAI	YACGTR	1 cut(s)	613
BsaJI	CCNNGG	2 cut(s)	326, 799
Bsc4I	CCNNNNNNNGG	2 cut(s)	158, 365
Bse118I	RCCGGY	1 cut(s)	745
Bse3DI	GCAATG	2 cut(s)	396, 1125
BseBI	CCWGG	5 cut(s)	135, 327, 462, 1067, 1185
BseDI	CCNNGG	2 cut(s)	326, 799
BseGI	GGATG	2 cut(s)	224, 1093
BseLI	CCNNNNNNNGG	2 cut(s)	158, 365
BseMI	GCAATG	2 cut(s)	396, 1125
BseMII	CTCAG	3 cut(s)	155, 969, 1055
BseRI	GAGGAG	5 cut(s)	21, 24, 513, 941, 1097
BseXI	GCAGC	5 cut(s)	80, 549, 998, 1020, 1068
BseYI	CCCAGC	1 cut(s)	1147
BsgI	GTGCAG	2 cut(s)	639, 842
Bsh1236I	CGCG	1 cut(s)	1006
BshFI	GGCC	2 cut(s)	604, 853
BshNI	GGYRCC	1 cut(s)	167
BsiSI	CCGG	1 cut(s)	746
BslI	CCNNNNNNNGG	2 cut(s)	158, 365
BsmI	GAATGC	1 cut(s)	835
BsnI	GGCC	2 cut(s)	604, 853
Bsp119I	TTCGAA	1 cut(s)	340
Bsp143I	GATC	5 cut(s)	105, 355, 515, 697, 946
BspACI	CCGC	3 cut(s)	359, 580, 1028
BspANI	GGCC	2 cut(s)	604, 853
BspCNI	CTCAG	3 cut(s)	154, 970, 1054
BspFNI	CGCG	1 cut(s)	1006
BspLI	GGNNCC	2 cut(s)	169, 677
BspMAI	CTGCAG	1 cut(s)	98
BspPI	GGATC	3 cut(s)	113, 350, 523
BspQI	GCTCTTC	1 cut(s)	442
BspT104I	TTCGAA	1 cut(s)	340
BspT107I	GGYRCC	1 cut(s)	167
BsrDI	GCAATG	2 cut(s)	396, 1125
BsrFI	RCCGGY	1 cut(s)	745
BssAI	RCCGGY	1 cut(s)	745
BssECI	CCNNGG	2 cut(s)	326, 799
BssMI	GATC	5 cut(s)	105, 355, 515, 697, 946
BssSI	CACGAG	1 cut(s)	262
Bst2BI	CACGAG	1 cut(s)	262
Bst2UI	CCWGG	5 cut(s)	135, 327, 462, 1067, 1185
Bst4CI	ACNGT	1 cut(s)	800
Bst6I	CTCTTC	3 cut(s)	216, 442, 531
BstAPI	GCANNNNNTGC	2 cut(s)	992, 1062
BstBAI	YACGTR	1 cut(s)	613
BstBI	TTCGAA	1 cut(s)	340
BstC8I	GCNNGC	3 cut(s)	9, 747, 1132
BstDEI	CTNAG	3 cut(s)	141, 978, 1041
BstDSI	CCRYGG	1 cut(s)	799
BstF5I	GGATG	2 cut(s)	224, 1093
BstFNI	CGCG	1 cut(s)	1006
BstHHI	GCGC	2 cut(s)	879, 1008
BstKTI	GATC	5 cut(s)	108, 358, 518, 700, 949
BstMBI	GATC	5 cut(s)	105, 355, 515, 697, 946
BstMWI	GCNNNNNNNGC	3 cut(s)	358, 992, 1062
BstNI	CCWGG	5 cut(s)	135, 327, 462, 1067, 1185
BstNSI	RCATGY	1 cut(s)	919
BstSCI	CCNGG	5 cut(s)	133, 325, 460, 1065, 1183
BstSFI	CTRYAG	1 cut(s)	94
BstUI	CGCG	1 cut(s)	1006
BstV1I	GCAGC	5 cut(s)	80, 549, 998, 1020, 1068
BstX2I	RGATCY	1 cut(s)	515
BstYI	RGATCY	1 cut(s)	515
BsuRI	GGCC	2 cut(s)	604, 853
BtgI	CCRYGG	1 cut(s)	799
BtsCI	GGATG	2 cut(s)	224, 1093
BtsI	GCAGTG	1 cut(s)	103
BtsIMutI	CAGTG	2 cut(s)	71, 103
Cac8I	GCNNGC	3 cut(s)	9, 747, 1132
CaiI	CAGNNNCTG	1 cut(s)	1062
CfoI	GCGC	2 cut(s)	879, 1008
Cfr10I	RCCGGY	1 cut(s)	745
Cfr13I	GGNCC	2 cut(s)	310, 676
Csp6I	GTAC	2 cut(s)	69, 1194
CspCI	CAANNNNNGTGG	2 cut(s)	1112, 1147
CviAII	CATG	6 cut(s)	77, 245, 269, 353, 916, 1115
CviQI	GTAC	2 cut(s)	69, 1194
DdeI	CTNAG	3 cut(s)	141, 978, 1041
DpnI	GATC	5 cut(s)	107, 357, 517, 699, 948
DpnII	GATC	5 cut(s)	105, 355, 515, 697, 946
Eam1104I	CTCTTC	3 cut(s)	216, 442, 531
EarI	CTCTTC	3 cut(s)	216, 442, 531
Eco47I	GGWCC	2 cut(s)	310, 676
Eco57I	CTGAAG	2 cut(s)	167, 796
EcoRII	CCWGG	5 cut(s)	133, 325, 460, 1065, 1183
FaeI	CATG	6 cut(s)	80, 248, 272, 356, 919, 1118
FatI	CATG	6 cut(s)	76, 244, 268, 352, 915, 1114
FauNDI	CATATG	1 cut(s)	922
Fnu4HI	GCNGC	5 cut(s)	94, 563, 987, 1009, 1057
FokI	GGATG	2 cut(s)	211, 1100
Fsp4HI	GCNGC	5 cut(s)	94, 563, 987, 1009, 1057
FspBI	CTAG	2 cut(s)	888, 1094
FspI	TGCGCA	1 cut(s)	878
GlaI	GCGC	2 cut(s)	878, 1007
GluI	GCNGC	5 cut(s)	94, 563, 987, 1009, 1057
GsaI	CCCAGC	1 cut(s)	1151
GsuI	CTGGAG	1 cut(s)	855
HaeIII	GGCC	2 cut(s)	604, 853
HapII	CCGG	1 cut(s)	746
HhaI	GCGC	2 cut(s)	879, 1008
Hin1II	CATG	6 cut(s)	80, 248, 272, 356, 919, 1118
Hin6I	GCGC	2 cut(s)	877, 1006
HinP1I	GCGC	2 cut(s)	877, 1006
HindIII	AAGCTT	2 cut(s)	249, 645
HinfI	GANTC	4 cut(s)	179, 623, 722, 727
HpaII	CCGG	1 cut(s)	746
HphI	GGTGA	1 cut(s)	315
Hpy166II	GTNNAC	4 cut(s)	69, 467, 808, 1194
Hpy188I	TCNGA	7 cut(s)	121, 184, 236, 310, 664, 979, 1044
Hpy188III	TCNNGA	3 cut(s)	366, 489, 888
Hpy8I	GTNNAC	4 cut(s)	69, 467, 808, 1194
Hpy99I	CGWCG	1 cut(s)	240
HpyAV	CCTTC	3 cut(s)	336, 603, 758
HpyCH4III	ACNGT	1 cut(s)	800
HpyCH4IV	ACGT	2 cut(s)	612, 861
HpyF10VI	GCNNNNNNNGC	3 cut(s)	358, 992, 1062
HpyF3I	CTNAG	3 cut(s)	141, 978, 1041
HpySE526I	ACGT	2 cut(s)	612, 861
Hsp92II	CATG	6 cut(s)	80, 248, 272, 356, 919, 1118
HspAI	GCGC	2 cut(s)	877, 1006
KroI	GCCGGC	1 cut(s)	745
KroNI	GCCGGC	1 cut(s)	747
Kzo9I	GATC	5 cut(s)	105, 355, 515, 697, 946
LguI	GCTCTTC	1 cut(s)	442
LmnI	GCTCC	2 cut(s)	368, 381
Lsp1109I	GCAGC	5 cut(s)	80, 549, 998, 1020, 1068
LweI	GCATC	2 cut(s)	1004, 1068
MaeI	CTAG	2 cut(s)	888, 1094
MaeII	ACGT	2 cut(s)	612, 861
MaeIII	GTNAC	3 cut(s)	685, 787, 820
MalI	GATC	5 cut(s)	107, 357, 517, 699, 948
MboI	GATC	5 cut(s)	105, 355, 515, 697, 946
MboII	GAAGA	8 cut(s)	69, 203, 213, 459, 518, 651, 956, 1043
MfeI	CAATTG	1 cut(s)	867
MflI	RGATCY	1 cut(s)	515
MlyI	GAGTC	1 cut(s)	721
MmeI	TCCRAC	3 cut(s)	259, 288, 741
MroNI	GCCGGC	1 cut(s)	745
MseI	TTAA	5 cut(s)	128, 483, 506, 1137, 1222
MslI	CAYNNNNRTG	1 cut(s)	615
MspA1I	CMGCKG	2 cut(s)	145, 989
MspI	CCGG	1 cut(s)	746
MspR9I	CCNGG	5 cut(s)	135, 327, 462, 1067, 1185
MunI	CAATTG	1 cut(s)	867
Mva1269I	GAATGC	1 cut(s)	835
MvaI	CCWGG	5 cut(s)	135, 327, 462, 1067, 1185
MvnI	CGCG	1 cut(s)	1006
MwoI	GCNNNNNNNGC	3 cut(s)	358, 992, 1062
NaeI	GCCGGC	1 cut(s)	747
NdeI	CATATG	1 cut(s)	922
NdeII	GATC	5 cut(s)	105, 355, 515, 697, 946
NgoMIV	GCCGGC	1 cut(s)	745
NlaIII	CATG	6 cut(s)	80, 248, 272, 356, 919, 1118
NlaIV	GGNNCC	2 cut(s)	169, 677
NmuCI	GTSAC	1 cut(s)	820
NsbI	TGCGCA	1 cut(s)	878
NspI	RCATGY	1 cut(s)	919
NspV	TTCGAA	1 cut(s)	340
OliI	CACNNNNGTG	1 cut(s)	615
PciSI	GCTCTTC	1 cut(s)	442
PctI	GAATGC	1 cut(s)	835
PdiI	GCCGGC	1 cut(s)	747
PfeI	GAWTC	3 cut(s)	179, 623, 722
PflMI	CCANNNNNTGG	1 cut(s)	158
PkrI	GCNGC	5 cut(s)	95, 564, 988, 1010, 1058
PleI	GAGTC	1 cut(s)	721
PpsI	GAGTC	1 cut(s)	721
Ppu21I	YACGTR	1 cut(s)	613
PshBI	ATTAAT	1 cut(s)	506
Psp6I	CCWGG	5 cut(s)	133, 325, 460, 1065, 1183
PspFI	CCCAGC	1 cut(s)	1147
PspGI	CCWGG	5 cut(s)	133, 325, 460, 1065, 1183
PspN4I	GGNNCC	2 cut(s)	169, 677
PspPI	GGNCC	2 cut(s)	310, 676
PstI	CTGCAG	1 cut(s)	98
PstNI	CAGNNNCTG	1 cut(s)	1062
PsuI	RGATCY	1 cut(s)	515
PvuII	CAGCTG	2 cut(s)	145, 989
RsaI	GTAC	2 cut(s)	70, 1195
RsaNI	GTAC	2 cut(s)	69, 1194
RseI	CAYNNNNRTG	1 cut(s)	615
SapI	GCTCTTC	1 cut(s)	442
SaqAI	TTAA	5 cut(s)	128, 483, 506, 1137, 1222
SatI	GCNGC	5 cut(s)	94, 563, 987, 1009, 1057
Sau3AI	GATC	5 cut(s)	105, 355, 515, 697, 946
Sau96I	GGNCC	2 cut(s)	310, 676
SchI	GAGTC	1 cut(s)	721
ScrFI	CCNGG	5 cut(s)	135, 327, 462, 1067, 1185
SfaNI	GCATC	2 cut(s)	1004, 1068
SfcI	CTRYAG	1 cut(s)	94
SfuI	TTCGAA	1 cut(s)	340
SinI	GGWCC	2 cut(s)	310, 676
SmiMI	CAYNNNNRTG	1 cut(s)	615
SsiI	CCGC	3 cut(s)	359, 580, 1028
SspMI	CTAG	2 cut(s)	888, 1094
StyD4I	CCNGG	5 cut(s)	133, 325, 460, 1065, 1183
TaaI	ACNGT	1 cut(s)	800
TaiI	ACGT	2 cut(s)	615, 864
TaqI	TCGA	4 cut(s)	340, 634, 725, 770
TatI	WGTACW	1 cut(s)	1193
TfiI	GAWTC	3 cut(s)	179, 623, 722
Tru1I	TTAA	5 cut(s)	128, 483, 506, 1137, 1222
Tru9I	TTAA	5 cut(s)	128, 483, 506, 1137, 1222
TscAI	CASTG	2 cut(s)	71, 103
TseFI	GTSAC	1 cut(s)	820
TseI	GCWGC	5 cut(s)	93, 562, 986, 1008, 1056
Tsp45I	GTSAC	1 cut(s)	820
TspDTI	ATGAA	4 cut(s)	138, 213, 261, 765
TspRI	CASTG	2 cut(s)	71, 103
Van91I	CCANNNNNTGG	1 cut(s)	158
VpaK11BI	GGWCC	2 cut(s)	310, 676
VspI	ATTAAT	1 cut(s)	506
XbaI	TCTAGA	1 cut(s)	887
XceI	RCATGY	1 cut(s)	919
XcmI	CCANNNNNNNNNTGG	1 cut(s)	554
XspI	CTAG	2 cut(s)	888, 1094

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.