Rh2AG024600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0004831
Physical Location & Seq
Reverse (-)
1731206 .. 1731688
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG024600.1

Sequence Viewer

Length: 261 bp
ATGAGTTCTGCTGCACATTTTATAAAACACCTTCCGGGTGAAAGTCAAGGGCCTCAGCTGAATAATGTCGGTATTGGATTGCTTGCCAATTTTGAATCCGAGAGTGTCAATGGCCATCTTTTACCTCATCCTGCATCTTCATCTTCATCCTCATCCCAAGGATCACGTTCACATCAAGCTTTAAAACCTACAAGCAGCCTGTTTCAAGCAAGGCAGAGTGTACTTCATCAATGGTCAATCATAACTCGTCGCGAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.26

Weight (kDa)

8.45

Isoelectric Point (pI)

67.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 23
AccII CGCG 1 cut(s) 252
AclWI GGATC 1 cut(s) 169
AcoI YGGCCR 1 cut(s) 112
AfaI GTAC 1 cut(s) 222
AgsI TTSAA 2 cut(s) 95, 206
AluBI AGCT 2 cut(s) 58, 179
AluI AGCT 2 cut(s) 58, 179
AlwI GGATC 1 cut(s) 169
AoxI GGCC 2 cut(s) 50, 112
ApeKI GCWGC 2 cut(s) 11, 195
AspS9I GGNCC 1 cut(s) 50
AsuC2I CCSGG 1 cut(s) 36
AsuHPI GGTGA 1 cut(s) 50
BalI TGGCCA 1 cut(s) 114
BbvCI CCTCAGC 1 cut(s) 54
BbvI GCAGC 1 cut(s) 207
BccI CCATC 1 cut(s) 123
BcnI CCSGG 1 cut(s) 36
BisI GCNGC 2 cut(s) 12, 196
BlsI GCNGC 2 cut(s) 13, 197
Bme1390I CCNGG 1 cut(s) 36
BmgT120I GGNCC 1 cut(s) 50
BmrFI CCNGG 1 cut(s) 36
BmsI GCATC 1 cut(s) 143
Bpu10I CCTNAGC 1 cut(s) 54
BpuMI CCSGG 1 cut(s) 36
BsaJI CCNNGG 1 cut(s) 157
BseDI CCNNGG 1 cut(s) 157
BseGI GGATG 3 cut(s) 127, 146, 152
BseMII CTCAG 1 cut(s) 68
BseXI GCAGC 1 cut(s) 207
Bsh1236I CGCG 1 cut(s) 252
BshFI GGCC 2 cut(s) 52, 114
BsiSI CCGG 1 cut(s) 35
BsnI GGCC 2 cut(s) 52, 114
Bsp143I GATC 1 cut(s) 161
Bsp68I TCGCGA 1 cut(s) 252
BspANI GGCC 2 cut(s) 52, 114
BspCNI CTCAG 1 cut(s) 67
BspFNI CGCG 1 cut(s) 252
BspPI GGATC 1 cut(s) 169
BssECI CCNNGG 1 cut(s) 157
BssMI GATC 1 cut(s) 161
BssT1I CCWWGG 1 cut(s) 157
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 1 cut(s) 54
BstF5I GGATG 3 cut(s) 127, 146, 152
BstFNI CGCG 1 cut(s) 252
BstKTI GATC 1 cut(s) 164
BstMBI GATC 1 cut(s) 161
BstSCI CCNGG 1 cut(s) 34
BstUI CGCG 1 cut(s) 252
BstV1I GCAGC 1 cut(s) 207
BsuRI GGCC 2 cut(s) 52, 114
BtsCI GGATG 3 cut(s) 127, 146, 152
BtuMI TCGCGA 1 cut(s) 252
Cac8I GCNNGC 1 cut(s) 84
Cfr13I GGNCC 1 cut(s) 50
Csp6I GTAC 1 cut(s) 221
CviJI RGCY 5 cut(s) 52, 58, 114, 179, 198
CviKI_1 RGCY 5 cut(s) 52, 58, 114, 179, 198
CviQI GTAC 1 cut(s) 221
DdeI CTNAG 1 cut(s) 54
DpnI GATC 1 cut(s) 163
DpnII GATC 1 cut(s) 161
DraI TTTAAA 1 cut(s) 183
EaeI YGGCCR 1 cut(s) 112
Eco130I CCWWGG 1 cut(s) 157
EcoO109I RGGNCCY 1 cut(s) 50
EcoT14I CCWWGG 1 cut(s) 157
ErhI CCWWGG 1 cut(s) 157
FaiI YATR 2 cut(s) 23, 242
Fnu4HI GCNGC 2 cut(s) 12, 196
FokI GGATG 3 cut(s) 114, 133, 139
Fsp4HI GCNGC 2 cut(s) 12, 196
GluI GCNGC 2 cut(s) 12, 196
HaeIII GGCC 2 cut(s) 52, 114
HapII CCGG 1 cut(s) 35
HindIII AAGCTT 1 cut(s) 177
HinfI GANTC 1 cut(s) 95
HpaII CCGG 1 cut(s) 35
HphI GGTGA 1 cut(s) 50
Hpy166II GTNNAC 2 cut(s) 170, 221
Hpy188I TCNGA 1 cut(s) 100
Hpy188III TCNNGA 1 cut(s) 251
Hpy8I GTNNAC 2 cut(s) 170, 221
Hpy99I CGWCG 1 cut(s) 252
HpyAV CCTTC 1 cut(s) 41
HpyCH4IV ACGT 1 cut(s) 166
HpyCH4V TGCA 2 cut(s) 14, 134
HpyF3I CTNAG 1 cut(s) 54
HpySE526I ACGT 1 cut(s) 166
Kzo9I GATC 1 cut(s) 161
LpnPI CCDG 3 cut(s) 48, 144, 212
Lsp1109I GCAGC 1 cut(s) 207
LweI GCATC 1 cut(s) 143
MaeII ACGT 1 cut(s) 166
MalI GATC 1 cut(s) 163
MboI GATC 1 cut(s) 161
MboII GAAGA 2 cut(s) 129, 135
MlsI TGGCCA 1 cut(s) 114
MluCI AATT 1 cut(s) 88
MluNI TGGCCA 1 cut(s) 114
MnlI CCTC 3 cut(s) 63, 135, 160
Mox20I TGGCCA 1 cut(s) 114
MscI TGGCCA 1 cut(s) 114
MseI TTAA 1 cut(s) 182
Msp20I TGGCCA 1 cut(s) 114
MspA1I CMGCKG 1 cut(s) 58
MspI CCGG 1 cut(s) 35
MspR9I CCNGG 1 cut(s) 36
MvnI CGCG 1 cut(s) 252
NciI CCSGG 1 cut(s) 36
NdeII GATC 1 cut(s) 161
NruI TCGCGA 1 cut(s) 252
PfeI GAWTC 1 cut(s) 95
PkrI GCNGC 2 cut(s) 13, 197
PsiI TTATAA 1 cut(s) 23
PspPI GGNCC 1 cut(s) 50
PvuII CAGCTG 1 cut(s) 58
RruI TCGCGA 1 cut(s) 252
RsaI GTAC 1 cut(s) 222
RsaNI GTAC 1 cut(s) 221
SaqAI TTAA 1 cut(s) 182
SatI GCNGC 2 cut(s) 12, 196
Sau3AI GATC 1 cut(s) 161
Sau96I GGNCC 1 cut(s) 50
ScrFI CCNGG 1 cut(s) 36
SetI ASST 6 cut(s) 33, 60, 127, 169, 181, 190
SfaNI GCATC 1 cut(s) 143
Sse9I AATT 1 cut(s) 88
StyD4I CCNGG 1 cut(s) 34
StyI CCWWGG 1 cut(s) 157
TaiI ACGT 1 cut(s) 169
TasI AATT 1 cut(s) 88
TatI WGTACW 1 cut(s) 220
TfiI GAWTC 1 cut(s) 95
Tru1I TTAA 1 cut(s) 182
Tru9I TTAA 1 cut(s) 182
TseI GCWGC 2 cut(s) 11, 195
TspDTI ATGAA 3 cut(s) 129, 135, 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.