Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004831

Physical Location & Seq

Genomic Coordinates Forward (+)

1786867 .. 1787475

Gene Structure 609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG023600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGAACAAATACGAACGTGTCCGGACGCTTTCCAAGACTGGGAGGTACGGCGAAGTCTACTCCGTGAGGAACAAGCAGACGAATAGGTATTTCATCGCCCAAGAATTCAATCGGACAGGCCTTGAAGTTGCCTGGCGCGAATGCGGGTTCCTGGAAGAGCTATCCGGGTCGGGTCATGTTATCAAGAAAGTGGAGGAAATCCCGAACTCCGGTGAGCGACTCGCCGTCACGGTGGTCTACGAAGCTCTCGCCGCGACAAGTTTGAGGCGGTTCTTGGACGCCAACCCCGAACAGCCTCTGCGGCTCCGGGCCGTCAAATTGATCACATACCAAATCTTGAAGGGCTTGGCCGACGCTCACAGCCTGGGCATCTTTCACCGTGACATCCGCCCCAGTAAGATCTCCGTCGTTGTCGCCGACGATGGGTCGTTGACAATCAAGATAGTGGATTTCAGGGACGCCAGAAGGGTGGGTCCACCGGAACCCATCACTCCGACTAGAGACATCGAAAAGGTAAATCTTTACTACCAGTCGCCGGAGCAGCTCATGGGCTCCACAAGCTACGCCGCCGCCGTCGACATGTGGGCGGTCGGATGCATTCTTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007346 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0030154 GO:0032502 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0046483 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051445 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0072686 GO:0090304 GO:0097472 GO:0140096 GO:1901360 GO:1901564 GO:1903047 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04068 ko04110 ko04114 ko04115 ko04151 ko04218 ko04914 ko04934 ko05161 ko05162 ko05165 ko05168 ko05169 ko05200 ko05203 ko05215 ko05222 ko05226 map04068 map04110 map04114 map04115 map04151 map04218 map04914 map04934 map05161 map05162 map05165 map05168 map05169 map05200 map05203 map05215 map05222 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

202

Amino Acids

22.73

Weight (kDa)

9.05

Isoelectric Point (pI)

34.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	13 - 201	1.2e-24	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	41 - 200	6.4e-09	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004831)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01850
malus_domestica	MD02G1016500.v1.1 MD15G1161000.v1.1
prunus_persica	Prupe.7G256200_v2.0.a1
pyrus_communis	pycom02g01460
rosa_chinensis	RchiOBHm_Chr2g0086821
rosa_laevigata	RLG00000015799 RLG00000015800 RLG00000015805 RLG00000015806
rosa_multiflora	Rmu_sc0010698.1_g000004
rosa_roxburghii	Rroxscaffold_2G00154110 Rroxscaffold_2G00154130
rosa_rugosa	Rorug01G0469800 Rorug01G0469900 Rorug01G0470000 Rorug07G0271000
rosa_samantha	Rh2AG022600 Rh2AG024500 Rh2AG024600 Rh2AG024800 Rh2BG022800 Rh2BG023100 Rh2CG023500 Rh2CG023600 Rh2CG025100 Rh2DG023000 Rh2DG025000 Rh2DG025100
rosa_wichuraiana	Rw2G001790 Rw2G001930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	57, 237, 576
AccII	CGCG	2 cut(s)	138, 254
AccIII	TCCGGA	1 cut(s)	21
AciI	CCGC	8 cut(s)	144, 252, 268, 301, 388, 567, 570, 587
AcoI	YGGCCR	1 cut(s)	348
AcsI	RAATTY	1 cut(s)	104
AcyI	GRCGYC	2 cut(s)	279, 459
AfaI	GTAC	1 cut(s)	47
AfiI	CCNNNNNNNGG	4 cut(s)	39, 209, 423, 535
AflIII	ACRYGT	2 cut(s)	16, 579
AgsI	TTSAA	3 cut(s)	109, 125, 340
AhdI	GACNNNNNGTC	2 cut(s)	224, 424
AjnI	CCWGG	3 cut(s)	131, 150, 363
AluBI	AGCT	4 cut(s)	160, 245, 544, 561
AluI	AGCT	4 cut(s)	160, 245, 544, 561
Alw26I	GTCTC	1 cut(s)	495
AlwNI	CAGNNNCTG	1 cut(s)	298
Aor13HI	TCCGGA	1 cut(s)	21
AoxI	GGCC	3 cut(s)	118, 309, 348
ApeKI	GCWGC	1 cut(s)	541
ApoI	RAATTY	1 cut(s)	104
AspLEI	GCGC	1 cut(s)	138
AspS9I	GGNCC	2 cut(s)	309, 473
AsuC2I	CCSGG	2 cut(s)	166, 308
AsuHPI	GGTGA	2 cut(s)	224, 368
AvaII	GGWCC	1 cut(s)	473
BanII	GRGCYC	1 cut(s)	554
BbvI	GCAGC	1 cut(s)	553
BccI	CCATC	2 cut(s)	416, 494
BceAI	ACGGC	4 cut(s)	64, 209, 296, 557
BciT130I	CCWGG	3 cut(s)	133, 152, 365
BclI	TGATCA	1 cut(s)	321
BcnI	CCSGG	2 cut(s)	166, 308
BcoDI	GTCTC	1 cut(s)	495
BfaI	CTAG	1 cut(s)	498
BglI	GCCNNNNNGGC	1 cut(s)	301
BglII	AGATCT	1 cut(s)	399
BisI	GCNGC	5 cut(s)	252, 302, 542, 567, 570
BlsI	GCNGC	5 cut(s)	253, 303, 543, 568, 571
Bme1390I	CCNGG	5 cut(s)	133, 152, 166, 308, 365
Bme18I	GGWCC	1 cut(s)	473
BmeRI	GACNNNNNGTC	2 cut(s)	224, 424
BmgT120I	GGNCC	2 cut(s)	309, 473
BmiI	GGNNCC	5 cut(s)	149, 305, 474, 483, 553
BmrFI	CCNGG	5 cut(s)	133, 152, 166, 308, 365
BmrI	ACTGGG	2 cut(s)	48, 387
BmsI	GCATC	2 cut(s)	378, 584
BmuI	ACTGGG	2 cut(s)	48, 387
BpuMI	CCSGG	2 cut(s)	166, 308
BsaHI	GRCGYC	2 cut(s)	279, 459
BsaJI	CCNNGG	1 cut(s)	364
BsaWI	WCCGGW	3 cut(s)	21, 209, 478
Bsc4I	CCNNNNNNNGG	4 cut(s)	39, 209, 423, 535
Bse1I	ACTGG	3 cut(s)	43, 393, 529
BseAI	TCCGGA	1 cut(s)	21
BseBI	CCWGG	3 cut(s)	133, 152, 365
BseDI	CCNNGG	1 cut(s)	364
BseGI	GGATG	2 cut(s)	384, 599
BseLI	CCNNNNNNNGG	4 cut(s)	39, 209, 423, 535
BseNI	ACTGG	3 cut(s)	43, 393, 529
BseXI	GCAGC	1 cut(s)	553
Bsh1236I	CGCG	2 cut(s)	138, 254
Bsh1285I	CGRYCG	1 cut(s)	591
BshFI	GGCC	3 cut(s)	120, 311, 350
BsiEI	CGRYCG	1 cut(s)	591
BsiSI	CCGG	6 cut(s)	22, 165, 210, 307, 479, 536
BslFI	GGGAC	1 cut(s)	470
BslI	CCNNNNNNNGG	4 cut(s)	39, 209, 423, 535
BsmAI	GTCTC	1 cut(s)	495
BsmFI	GGGAC	1 cut(s)	470
BsmI	GAATGC	2 cut(s)	146, 597
BsnI	GGCC	3 cut(s)	120, 311, 350
Bsp1286I	GDGCHC	1 cut(s)	554
Bsp13I	TCCGGA	1 cut(s)	21
Bsp143I	GATC	2 cut(s)	321, 399
BspACI	CCGC	8 cut(s)	144, 252, 268, 301, 388, 567, 570, 587
BspANI	GGCC	3 cut(s)	120, 311, 350
BspEI	TCCGGA	1 cut(s)	21
BspFNI	CGCG	2 cut(s)	138, 254
BspLI	GGNNCC	5 cut(s)	149, 305, 474, 483, 553
BspQI	GCTCTTC	1 cut(s)	150
BsrI	ACTGG	3 cut(s)	43, 393, 529
BssECI	CCNNGG	1 cut(s)	364
BssMI	GATC	2 cut(s)	321, 399
BssNI	GRCGYC	2 cut(s)	279, 459
Bst2UI	CCWGG	3 cut(s)	133, 152, 365
Bst4CI	ACNGT	2 cut(s)	232, 380
Bst6I	CTCTTC	1 cut(s)	150
BstACI	GRCGYC	2 cut(s)	279, 459
BstF5I	GGATG	2 cut(s)	384, 599
BstFNI	CGCG	2 cut(s)	138, 254
BstHHI	GCGC	1 cut(s)	138
BstKTI	GATC	2 cut(s)	324, 402
BstMAI	GTCTC	1 cut(s)	495
BstMBI	GATC	2 cut(s)	321, 399
BstMCI	CGRYCG	1 cut(s)	591
BstMWI	GCNNNNNNNGC	4 cut(s)	251, 301, 541, 558
BstNI	CCWGG	3 cut(s)	133, 152, 365
BstNSI	RCATGY	1 cut(s)	583
BstSCI	CCNGG	5 cut(s)	131, 150, 164, 306, 363
BstUI	CGCG	2 cut(s)	138, 254
BstV1I	GCAGC	1 cut(s)	553
BstX2I	RGATCY	1 cut(s)	399
BstXI	CCANNNNNNTGG	1 cut(s)	469
BstYI	RGATCY	1 cut(s)	399
BsuRI	GGCC	3 cut(s)	120, 311, 350
BtgZI	GCGATG	1 cut(s)	79
BtsCI	GGATG	2 cut(s)	384, 599
CaiI	CAGNNNCTG	1 cut(s)	298
CfoI	GCGC	1 cut(s)	138
Cfr13I	GGNCC	2 cut(s)	309, 473
CseI	GACGC	4 cut(s)	34, 287, 362, 467
Csp6I	GTAC	1 cut(s)	46
CviAII	CATG	3 cut(s)	176, 547, 580
CviQI	GTAC	1 cut(s)	46
DpnI	GATC	2 cut(s)	323, 401
DpnII	GATC	2 cut(s)	321, 399
DriI	GACNNNNNGTC	2 cut(s)	224, 424
EaeI	YGGCCR	1 cut(s)	348
Eam1104I	CTCTTC	1 cut(s)	150
Eam1105I	GACNNNNNGTC	2 cut(s)	224, 424
EarI	CTCTTC	1 cut(s)	150
EciI	GGCGGA	1 cut(s)	377
Eco147I	AGGCCT	1 cut(s)	120
Eco24I	GRGCYC	1 cut(s)	554
Eco47I	GGWCC	1 cut(s)	473
EcoRI	GAATTC	1 cut(s)	104
EcoRII	CCWGG	3 cut(s)	131, 150, 363
EcoT22I	ATGCAT	1 cut(s)	599
EcoT38I	GRGCYC	1 cut(s)	554
FaeI	CATG	3 cut(s)	179, 550, 583
FaiI	YATR	4 cut(s)	177, 328, 548, 581
FaqI	GGGAC	1 cut(s)	470
FatI	CATG	3 cut(s)	175, 546, 579
FauI	CCCGC	1 cut(s)	137
FbaI	TGATCA	1 cut(s)	321
FblI	GTMKAC	3 cut(s)	57, 237, 576
Fnu4HI	GCNGC	5 cut(s)	252, 302, 542, 567, 570
FokI	GGATG	1 cut(s)	371
FriOI	GRGCYC	1 cut(s)	554
Fsp4HI	GCNGC	5 cut(s)	252, 302, 542, 567, 570
FspBI	CTAG	1 cut(s)	498
GlaI	GCGC	1 cut(s)	137
GluI	GCNGC	5 cut(s)	252, 302, 542, 567, 570
HaeIII	GGCC	3 cut(s)	120, 311, 350
HapII	CCGG	6 cut(s)	22, 165, 210, 307, 479, 536
HgaI	GACGC	4 cut(s)	34, 287, 362, 467
HhaI	GCGC	1 cut(s)	138
Hin1I	GRCGYC	2 cut(s)	279, 459
Hin1II	CATG	3 cut(s)	179, 550, 583
Hin6I	GCGC	1 cut(s)	136
HinP1I	GCGC	1 cut(s)	136
HincII	GTYRAC	2 cut(s)	432, 577
HindII	GTYRAC	2 cut(s)	432, 577
HinfI	GANTC	1 cut(s)	219
HpaII	CCGG	6 cut(s)	22, 165, 210, 307, 479, 536
HphI	GGTGA	2 cut(s)	224, 368
Hpy166II	GTNNAC	5 cut(s)	58, 238, 432, 476, 577
Hpy188I	TCNGA	3 cut(s)	114, 495, 593
Hpy188III	TCNNGA	5 cut(s)	22, 184, 202, 337, 439
Hpy8I	GTNNAC	5 cut(s)	58, 238, 432, 476, 577
Hpy99I	CGWCG	4 cut(s)	356, 410, 422, 578
HpyAV	CCTTC	2 cut(s)	334, 459
HpyCH4III	ACNGT	2 cut(s)	232, 380
HpyCH4IV	ACGT	1 cut(s)	16
HpyCH4V	TGCA	1 cut(s)	597
HpyF10VI	GCNNNNNNNGC	4 cut(s)	251, 301, 541, 558
HpySE526I	ACGT	1 cut(s)	16
Hsp92I	GRCGYC	2 cut(s)	279, 459
Hsp92II	CATG	3 cut(s)	179, 550, 583
HspAI	GCGC	1 cut(s)	136
Kpn2I	TCCGGA	1 cut(s)	21
Ksp22I	TGATCA	1 cut(s)	321
Kzo9I	GATC	2 cut(s)	321, 399
LguI	GCTCTTC	1 cut(s)	150
LmnI	GCTCC	3 cut(s)	309, 538, 557
Lsp1109I	GCAGC	1 cut(s)	553
LweI	GCATC	2 cut(s)	378, 584
MaeI	CTAG	1 cut(s)	498
MaeII	ACGT	1 cut(s)	16
MaeIII	GTNAC	2 cut(s)	226, 380
MalI	GATC	2 cut(s)	323, 401
MboI	GATC	2 cut(s)	321, 399
MboII	GAAGA	1 cut(s)	167
MflI	RGATCY	1 cut(s)	399
MhlI	GDGCHC	1 cut(s)	554
MluCI	AATT	2 cut(s)	104, 317
MlyI	GAGTC	1 cut(s)	213
MmeI	TCCRAC	2 cut(s)	518, 571
MnlI	CCTC	5 cut(s)	36, 60, 187, 258, 306
Mph1103I	ATGCAT	1 cut(s)	599
MroI	TCCGGA	1 cut(s)	21
MspI	CCGG	6 cut(s)	22, 165, 210, 307, 479, 536
MspR9I	CCNGG	5 cut(s)	133, 152, 166, 308, 365
Mva1269I	GAATGC	2 cut(s)	146, 597
MvaI	CCWGG	3 cut(s)	133, 152, 365
MvnI	CGCG	2 cut(s)	138, 254
MwoI	GCNNNNNNNGC	4 cut(s)	251, 301, 541, 558
NciI	CCSGG	2 cut(s)	166, 308
NdeII	GATC	2 cut(s)	321, 399
NlaIII	CATG	3 cut(s)	179, 550, 583
NlaIV	GGNNCC	5 cut(s)	149, 305, 474, 483, 553
NmuCI	GTSAC	2 cut(s)	226, 380
NsiI	ATGCAT	1 cut(s)	599
NspI	RCATGY	1 cut(s)	583
PceI	AGGCCT	1 cut(s)	120
PciI	ACATGT	1 cut(s)	579
PciSI	GCTCTTC	1 cut(s)	150
PcsI	WCGNNNNNNNCGW	3 cut(s)	285, 414, 570
PctI	GAATGC	2 cut(s)	146, 597
PfoI	TCCNGGA	1 cut(s)	150
PkrI	GCNGC	5 cut(s)	253, 303, 543, 568, 571
PleI	GAGTC	1 cut(s)	213
PpsI	GAGTC	1 cut(s)	213
PscI	ACATGT	1 cut(s)	579
Psp6I	CCWGG	3 cut(s)	131, 150, 363
PspGI	CCWGG	3 cut(s)	131, 150, 363
PspN4I	GGNNCC	5 cut(s)	149, 305, 474, 483, 553
PspPI	GGNCC	2 cut(s)	309, 473
PstNI	CAGNNNCTG	1 cut(s)	298
PsuI	RGATCY	1 cut(s)	399
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
SalI	GTCGAC	1 cut(s)	575
SapI	GCTCTTC	1 cut(s)	150
SatI	GCNGC	5 cut(s)	252, 302, 542, 567, 570
Sau3AI	GATC	2 cut(s)	321, 399
Sau96I	GGNCC	2 cut(s)	309, 473
SchI	GAGTC	1 cut(s)	213
ScrFI	CCNGG	5 cut(s)	133, 152, 166, 308, 365
SduI	GDGCHC	1 cut(s)	554
SetI	ASST	8 cut(s)	19, 47, 89, 162, 247, 516, 546, 563
SfaNI	GCATC	2 cut(s)	378, 584
SinI	GGWCC	1 cut(s)	473
Sse9I	AATT	2 cut(s)	104, 317
SseBI	AGGCCT	1 cut(s)	120
SsiI	CCGC	8 cut(s)	144, 252, 268, 301, 388, 567, 570, 587
SspMI	CTAG	1 cut(s)	498
StuI	AGGCCT	1 cut(s)	120
StyD4I	CCNGG	5 cut(s)	131, 150, 164, 306, 363
TaaI	ACNGT	2 cut(s)	232, 380
TaiI	ACGT	1 cut(s)	19
TaqI	TCGA	2 cut(s)	507, 576
TasI	AATT	2 cut(s)	104, 317
TauI	GCSGC	4 cut(s)	254, 304, 569, 572
TseFI	GTSAC	2 cut(s)	226, 380
TseI	GCWGC	1 cut(s)	541
Tsp45I	GTSAC	2 cut(s)	226, 380
TspDTI	ATGAA	2 cut(s)	17, 82
TspGWI	ACGGA	2 cut(s)	52, 394
VpaK11BI	GGWCC	1 cut(s)	473
XapI	RAATTY	1 cut(s)	104
XceI	RCATGY	1 cut(s)	583
XmiI	GTMKAC	3 cut(s)	57, 237, 576
XspI	CTAG	1 cut(s)	498
Zsp2I	ATGCAT	1 cut(s)	599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.