Rw2G001930

RING-H2 zinc finger domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0004831
Physical Location & Seq
Reverse (-)
1594995 .. 1596949
1955 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G001930.1

Sequence Viewer

Length: 1071 bp
ATGTTGGTGCAAGTGCACGGCGGTGCTCTGAATAATCTCTCAATTTGTGAGCGTTCCAATGAGGAAAATTGTGAATGTAGTAGAGGGATGAGTTCTGCTGCACATTTTATAAAACACCTTCCGGGTGAAAGTCAAGGGCCTCAGCTGAATAATGTCGGTATTGGATTGCTTGCCAATTTTGAATCCGAGAGTGTCAATGGCCATCTTTTACCTCATCCTGTGATTATATTGCTAACACTCCGAATCTTATTAACAATGGAAATTGCACCACATTTGCTTTTCGGATCCACTCCTCTTTGCCGATTCTCTCTTTCTCAAGGTCTTTTTGGGGTGCCTTCAAATCTTTTCCGGTCTGTAATGCCTGCCATTCAGCTTCCCCACACAAGCGGAGATTCAATGTCTCAAATGGAAGACGCTCCTGCTACTTTTGATGATAGTGGATTCCCTAGTGAGAACCAAATAATTGATATATGGAGGCAACTTCTCATGGAATCGACTCTATATATACACAGGCCGGCTGATAACTTGCTAGAAGGTTCAAGTTCCGTCTTTAGGGTAACGGCTGACAATGGATCAGTGGACTTCAGACTTAACGCTGAAGTTGTTAACCAATCACTAGTGTACTTTTCAATTGAAATGCGCAATCGCTTTGGAGGGATGAGGCTTGATGTGGATAACGTGTCATATGAGGAGCTATTGGCTTTAGAAGATCATATAGGGTATGTCAGCACAGGGTTATCCGAGGAAGCAGCCGTTGCATCTCTCAAACGCAGTAGTTATTTTCTGCTTGCTGATGAAAATGCTCCTAAAGAGTTTTGCAGCATCTGCCAGGAGGATTTTATAGAGGAAGATGAGCTAGGAACATTGGATTGCGGACACAGCTTCCACAATTGTTGCATCAAACAATGGCTAGGATATAAAAACGTGTGTCCTATATGCAAATCTCCTGCCTTATCTACTACGTTCTCACTTTCTTTCTTTTTTTTGGTTAAAACAGGAGTCGGGAAGAGCAAAGTGCTCTCCCACCCCAAATTTATTGAAATAAAGAAAAAGTACAATCTAATAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

356

Amino Acids

39.36

Weight (kDa)

5.22

Isoelectric Point (pI)

48.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 271 - 314 1.7e-07 RING-H2 zinc finger domain
zf-RING_2 PF13639 273 - 314 1.3e-12 Ring finger domain
zf-C3HC4_2 PF13923 273 - 313 2.2e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 273 - 313 6.8e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 273 - 311 1.9e-06 RING-type zinc-finger
zf-RING_11 PF17123 273 - 300 9.4e-06 RING-like zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 110
Acc16I TGCGCA 1 cut(s) 641
AccB1I GGYRCC 1 cut(s) 331
AciI CCGC 3 cut(s) 21, 387, 873
AclWI GGATC 3 cut(s) 279, 292, 580
AcoI YGGCCR 1 cut(s) 199
AcsI RAATTY 1 cut(s) 1031
AcuI CTGAAG 2 cut(s) 568, 618
AfaI GTAC 2 cut(s) 623, 1055
AfiI CCNNNNNNNGG 1 cut(s) 552
AflIII ACRYGT 2 cut(s) 678, 924
AgsI TTSAA 7 cut(s) 182, 339, 396, 540, 630, 635, 1040
AhlI ACTAGT 1 cut(s) 616
AjnI CCWGG 1 cut(s) 828
AleI CACNNNNGTG 1 cut(s) 21
AluBI AGCT 5 cut(s) 145, 373, 694, 856, 882
AluI AGCT 5 cut(s) 145, 373, 694, 856, 882
Alw21I GWGCWC 3 cut(s) 18, 28, 1020
Alw26I GTCTC 1 cut(s) 405
Alw44I GTGCAC 1 cut(s) 14
AlwI GGATC 3 cut(s) 279, 292, 580
AlwNI CAGNNNCTG 1 cut(s) 825
AoxI GGCC 3 cut(s) 137, 199, 512
ApaLI GTGCAC 1 cut(s) 14
ApeKI GCWGC 3 cut(s) 98, 749, 819
ApoI RAATTY 1 cut(s) 1031
AspLEI GCGC 1 cut(s) 642
AspS9I GGNCC 1 cut(s) 137
AsuC2I CCSGG 1 cut(s) 123
AsuHPI GGTGA 1 cut(s) 137
BaeGI GKGCMC 1 cut(s) 18
BalI TGGCCA 1 cut(s) 201
BamHI GGATCC 1 cut(s) 284
BanI GGYRCC 1 cut(s) 331
BbsI GAAGAC 1 cut(s) 417
Bbv12I GWGCWC 3 cut(s) 18, 28, 1020
BbvCI CCTCAGC 1 cut(s) 141
BbvI GCAGC 3 cut(s) 85, 761, 831
BccI CCATC 1 cut(s) 210
BceAI ACGGC 3 cut(s) 34, 576, 737
BciT130I CCWGG 1 cut(s) 830
BcnI CCSGG 1 cut(s) 123
BcoDI GTCTC 1 cut(s) 405
BcuI ACTAGT 1 cut(s) 616
BfaI CTAG 5 cut(s) 447, 530, 617, 857, 911
BisI GCNGC 3 cut(s) 99, 750, 820
BlsI GCNGC 3 cut(s) 100, 751, 821
Bme1390I CCNGG 2 cut(s) 123, 830
BmgT120I GGNCC 1 cut(s) 137
BmiI GGNNCC 2 cut(s) 286, 333
BmrFI CCNGG 2 cut(s) 123, 830
BmsI GCATC 3 cut(s) 767, 831, 906
BpiI GAAGAC 1 cut(s) 417
Bpu10I CCTNAGC 1 cut(s) 141
BpuEI CTTGAG 1 cut(s) 300
BpuMI CCSGG 1 cut(s) 123
BsaJI CCNNGG 1 cut(s) 741
BsaWI WCCGGW 1 cut(s) 348
Bsc4I CCNNNNNNNGG 1 cut(s) 552
Bse118I RCCGGY 1 cut(s) 514
BseBI CCWGG 1 cut(s) 830
BseDI CCNNGG 1 cut(s) 741
BseGI GGATG 3 cut(s) 93, 214, 663
BseLI CCNNNNNNNGG 1 cut(s) 552
BseMII CTCAG 1 cut(s) 155
BseRI GAGGAG 2 cut(s) 282, 704
BseSI GKGCMC 1 cut(s) 18
BseXI GCAGC 3 cut(s) 85, 761, 831
BsgI GTGCAG 1 cut(s) 84
BshFI GGCC 3 cut(s) 139, 201, 514
BshNI GGYRCC 1 cut(s) 331
BsiHKAI GWGCWC 3 cut(s) 18, 28, 1020
BsiSI CCGG 3 cut(s) 122, 349, 515
BslI CCNNNNNNNGG 1 cut(s) 552
BsmAI GTCTC 1 cut(s) 405
BsnI GGCC 3 cut(s) 139, 201, 514
Bsp1286I GDGCHC 3 cut(s) 18, 28, 1020
Bsp143I GATC 3 cut(s) 284, 572, 709
BspACI CCGC 3 cut(s) 21, 387, 873
BspANI GGCC 3 cut(s) 139, 201, 514
BspCNI CTCAG 1 cut(s) 154
BspLI GGNNCC 2 cut(s) 286, 333
BspPI GGATC 3 cut(s) 279, 292, 580
BspQI GCTCTTC 1 cut(s) 1001
BspT107I GGYRCC 1 cut(s) 331
BsrFI RCCGGY 1 cut(s) 514
BssAI RCCGGY 1 cut(s) 514
BssECI CCNNGG 1 cut(s) 741
BssMI GATC 3 cut(s) 284, 572, 709
Bst2UI CCWGG 1 cut(s) 830
Bst6I CTCTTC 1 cut(s) 1001
BstAPI GCANNNNNTGC 2 cut(s) 755, 825
BstC8I GCNNGC 4 cut(s) 171, 363, 516, 789
BstDEI CTNAG 1 cut(s) 141
BstF5I GGATG 3 cut(s) 93, 214, 663
BstHHI GCGC 1 cut(s) 642
BstKTI GATC 3 cut(s) 287, 575, 712
BstMAI GTCTC 1 cut(s) 405
BstMBI GATC 3 cut(s) 284, 572, 709
BstMWI GCNNNNNNNGC 3 cut(s) 755, 825, 879
BstNI CCWGG 1 cut(s) 830
BstSCI CCNGG 2 cut(s) 121, 828
BstSLI GKGCMC 1 cut(s) 18
BstV1I GCAGC 3 cut(s) 85, 761, 831
BstV2I GAAGAC 1 cut(s) 417
BstX2I RGATCY 1 cut(s) 284
BstYI RGATCY 1 cut(s) 284
BsuRI GGCC 3 cut(s) 139, 201, 514
BtsCI GGATG 3 cut(s) 93, 214, 663
BtsIMutI CAGTG 1 cut(s) 582
Cac8I GCNNGC 4 cut(s) 171, 363, 516, 789
CaiI CAGNNNCTG 1 cut(s) 825
CfoI GCGC 1 cut(s) 642
Cfr10I RCCGGY 1 cut(s) 514
Cfr13I GGNCC 1 cut(s) 137
CseI GACGC 1 cut(s) 422
Csp6I GTAC 2 cut(s) 622, 1054
CspCI CAANNNNNGTGG 2 cut(s) 875, 910
CviAII CATG 1 cut(s) 487
CviQI GTAC 2 cut(s) 622, 1054
DdeI CTNAG 1 cut(s) 141
DpnI GATC 3 cut(s) 286, 574, 711
DpnII GATC 3 cut(s) 284, 572, 709
EaeI YGGCCR 1 cut(s) 199
Eam1104I CTCTTC 1 cut(s) 1001
EarI CTCTTC 1 cut(s) 1001
Eco57I CTGAAG 2 cut(s) 568, 618
EcoO109I RGGNCCY 1 cut(s) 137
EcoRII CCWGG 1 cut(s) 828
FaeI CATG 1 cut(s) 490
FatI CATG 1 cut(s) 486
FauNDI CATATG 1 cut(s) 685
Fnu4HI GCNGC 3 cut(s) 99, 750, 820
FokI GGATG 3 cut(s) 100, 201, 670
Fsp4HI GCNGC 3 cut(s) 99, 750, 820
FspBI CTAG 5 cut(s) 447, 530, 617, 857, 911
FspI TGCGCA 1 cut(s) 641
GlaI GCGC 1 cut(s) 641
GluI GCNGC 3 cut(s) 99, 750, 820
HaeIII GGCC 3 cut(s) 139, 201, 514
HapII CCGG 3 cut(s) 122, 349, 515
HgaI GACGC 1 cut(s) 422
HhaI GCGC 1 cut(s) 642
Hin1II CATG 1 cut(s) 490
Hin6I GCGC 1 cut(s) 640
HinP1I GCGC 1 cut(s) 640
HincII GTYRAC 1 cut(s) 607
HindII GTYRAC 1 cut(s) 607
HinfI GANTC 8 cut(s) 182, 243, 303, 392, 441, 491, 496, 999
HpaI GTTAAC 1 cut(s) 607
HpaII CCGG 3 cut(s) 122, 349, 515
HphI GGTGA 1 cut(s) 137
Hpy166II GTNNAC 4 cut(s) 16, 580, 607, 622
Hpy188I TCNGA 6 cut(s) 30, 187, 242, 284, 587, 742
Hpy188III TCNNGA 1 cut(s) 1003
Hpy8I GTNNAC 4 cut(s) 16, 580, 607, 622
HpyAV CCTTC 3 cut(s) 128, 345, 527
HpyCH4IV ACGT 3 cut(s) 678, 924, 962
HpyCH4V TGCA 8 cut(s) 10, 16, 101, 266, 758, 819, 897, 939
HpyF10VI GCNNNNNNNGC 3 cut(s) 755, 825, 879
HpyF3I CTNAG 1 cut(s) 141
HpySE526I ACGT 3 cut(s) 678, 924, 962
Hsp92II CATG 1 cut(s) 490
HspAI GCGC 1 cut(s) 640
KroI GCCGGC 1 cut(s) 514
KroNI GCCGGC 1 cut(s) 516
KspAI GTTAAC 1 cut(s) 607
Kzo9I GATC 3 cut(s) 284, 572, 709
LguI GCTCTTC 1 cut(s) 1001
LmnI GCTCC 3 cut(s) 421, 691, 808
Lsp1109I GCAGC 3 cut(s) 85, 761, 831
LweI GCATC 3 cut(s) 767, 831, 906
MaeI CTAG 5 cut(s) 447, 530, 617, 857, 911
MaeII ACGT 3 cut(s) 678, 924, 962
MaeIII GTNAC 1 cut(s) 556
MalI GATC 3 cut(s) 286, 574, 711
MboI GATC 3 cut(s) 284, 572, 709
MboII GAAGA 4 cut(s) 422, 719, 860, 1018
MfeI CAATTG 2 cut(s) 630, 889
MflI RGATCY 1 cut(s) 284
MhlI GDGCHC 3 cut(s) 18, 28, 1020
MlsI TGGCCA 1 cut(s) 201
MluCI AATT 8 cut(s) 42, 67, 175, 261, 462, 630, 889, 1031
MluNI TGGCCA 1 cut(s) 201
MlyI GAGTC 2 cut(s) 490, 1008
Mox20I TGGCCA 1 cut(s) 201
MroNI GCCGGC 1 cut(s) 514
MscI TGGCCA 1 cut(s) 201
MseI TTAA 4 cut(s) 251, 591, 606, 990
MslI CAYNNNNRTG 1 cut(s) 21
Msp20I TGGCCA 1 cut(s) 201
MspA1I CMGCKG 1 cut(s) 145
MspI CCGG 3 cut(s) 122, 349, 515
MspR9I CCNGG 2 cut(s) 123, 830
MunI CAATTG 2 cut(s) 630, 889
MvaI CCWGG 1 cut(s) 830
MwoI GCNNNNNNNGC 3 cut(s) 755, 825, 879
NaeI GCCGGC 1 cut(s) 516
NciI CCSGG 1 cut(s) 123
NdeI CATATG 1 cut(s) 685
NdeII GATC 3 cut(s) 284, 572, 709
NgoMIV GCCGGC 1 cut(s) 514
NlaIII CATG 1 cut(s) 490
NlaIV GGNNCC 2 cut(s) 286, 333
NsbI TGCGCA 1 cut(s) 641
OliI CACNNNNGTG 1 cut(s) 21
PciSI GCTCTTC 1 cut(s) 1001
PdiI GCCGGC 1 cut(s) 516
PfeI GAWTC 6 cut(s) 182, 243, 303, 392, 441, 491
PkrI GCNGC 3 cut(s) 100, 751, 821
PleI GAGTC 2 cut(s) 490, 1007
PpsI GAGTC 2 cut(s) 490, 1007
PsiI TTATAA 1 cut(s) 110
Psp6I CCWGG 1 cut(s) 828
PspGI CCWGG 1 cut(s) 828
PspN4I GGNNCC 2 cut(s) 286, 333
PspPI GGNCC 1 cut(s) 137
PstNI CAGNNNCTG 1 cut(s) 825
PsuI RGATCY 1 cut(s) 284
PvuII CAGCTG 1 cut(s) 145
RsaI GTAC 2 cut(s) 623, 1055
RsaNI GTAC 2 cut(s) 622, 1054
RseI CAYNNNNRTG 1 cut(s) 21
SapI GCTCTTC 1 cut(s) 1001
SaqAI TTAA 4 cut(s) 251, 591, 606, 990
SatI GCNGC 3 cut(s) 99, 750, 820
Sau3AI GATC 3 cut(s) 284, 572, 709
Sau96I GGNCC 1 cut(s) 137
SchI GAGTC 2 cut(s) 490, 1008
ScrFI CCNGG 2 cut(s) 123, 830
SduI GDGCHC 3 cut(s) 18, 28, 1020
SfaNI GCATC 3 cut(s) 767, 831, 906
SmiMI CAYNNNNRTG 1 cut(s) 21
SmlI CTYRAG 1 cut(s) 315
SmoI CTYRAG 1 cut(s) 315
SpeI ACTAGT 1 cut(s) 616
Sse9I AATT 8 cut(s) 42, 67, 175, 261, 462, 630, 889, 1031
SsiI CCGC 3 cut(s) 21, 387, 873
SspMI CTAG 5 cut(s) 447, 530, 617, 857, 911
StyD4I CCNGG 2 cut(s) 121, 828
TaiI ACGT 3 cut(s) 681, 927, 965
TaqI TCGA 1 cut(s) 494
TasI AATT 8 cut(s) 42, 67, 175, 261, 462, 630, 889, 1031
TatI WGTACW 2 cut(s) 621, 1053
TfiI GAWTC 6 cut(s) 182, 243, 303, 392, 441, 491
Tru1I TTAA 4 cut(s) 251, 591, 606, 990
Tru9I TTAA 4 cut(s) 251, 591, 606, 990
TscAI CASTG 1 cut(s) 582
TseI GCWGC 3 cut(s) 98, 749, 819
TspDTI ATGAA 1 cut(s) 810
TspGWI ACGGA 1 cut(s) 535
TspRI CASTG 1 cut(s) 582
VneI GTGCAC 1 cut(s) 14
XapI RAATTY 1 cut(s) 1031
XspI CTAG 5 cut(s) 447, 530, 617, 857, 911
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.